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Coverage Report

  1. Project Clover database Thu Aug 13 2020 12:04:21 BST
  2. Package jalview.schemes

File BuriedColourScheme.java

 

Coverage histogram

../../img/srcFileCovDistChart10.png
0% of files have more coverage

Code metrics

0
5
5
1
81
33
5
1
1
5
1

Classes

Class Line # Actions
BuriedColourScheme 34 5 5
1.0100%
 

Contributing tests

This file is covered by 104 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.schemes;
22   
23    import jalview.api.AlignViewportI;
24    import jalview.datamodel.AnnotatedCollectionI;
25   
26    import java.awt.Color;
27   
28    /**
29    * DOCUMENT ME!
30    *
31    * @author $author$
32    * @version $Revision$
33    */
 
34    public class BuriedColourScheme extends ScoreColourScheme
35    {
36    /**
37    * Creates a new BuriedColourScheme object.
38    */
 
39  33 toggle public BuriedColourScheme()
40    {
41  33 super(ResidueProperties.aaIndex, ResidueProperties.buried,
42    ResidueProperties.buriedmin, ResidueProperties.buriedmax);
43    }
44   
45    /**
46    * DOCUMENT ME!
47    *
48    * @param c
49    * DOCUMENT ME!
50    *
51    * @return DOCUMENT ME!
52    */
 
53  792 toggle @Override
54    public Color makeColour(float c)
55    {
56  792 return new Color(0, (float) (1.0 - c), c);
57    }
58   
 
59  502 toggle @Override
60    public boolean isPeptideSpecific()
61    {
62  502 return true;
63    }
64   
 
65  301 toggle @Override
66    public String getSchemeName()
67    {
68  301 return JalviewColourScheme.Buried.toString();
69    }
70   
71    /**
72    * Returns a new instance of this colour scheme with which the given data may
73    * be coloured
74    */
 
75  9 toggle @Override
76    public ColourSchemeI getInstance(AlignViewportI view,
77    AnnotatedCollectionI coll)
78    {
79  9 return new BuriedColourScheme();
80    }
81    }
  • Report generated by OpenClover v 4.4.1 on Thu Aug 13 2020 12:06:48 BST using coverage data from Thu Aug 13 2020 12:06:40 BST.
  • OpenClover is free and open-source software.