Clover icon

Coverage Report

  1. Project Clover database Thu Dec 4 2025 16:11:35 GMT
  2. Package jalview.ws.jws1

File WS1Client.java

 

Coverage histogram

../../../img/srcFileCovDistChart3.png
52% of files have more coverage

Code metrics

6
15
4
1
135
54
7
0.47
3.75
4
1.75

Classes

Class Line # Actions
WS1Client 40 15 7
0.2424%
 

Contributing tests

This file is covered by 299 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.ws.jws1;
22   
23    import jalview.gui.AlignFrame;
24    import jalview.gui.Desktop;
25    import jalview.gui.WebserviceInfo;
26    import jalview.util.MessageManager;
27    import jalview.ws.WSClient;
28    import jalview.ws.WSMenuEntryProviderI;
29   
30    import javax.swing.JMenu;
31   
32    import ext.vamsas.ServiceHandle;
33   
34    /**
35    * JWS1 Specific UI attributes and methods
36    *
37    * @author JimP
38    *
39    */
 
40    public abstract class WS1Client extends WSClient
41    implements WSMenuEntryProviderI
42    {
43   
44    /**
45    * original service handle that this client was derived from
46    */
47    ServiceHandle serviceHandle = null;
48   
49    /**
50    * default constructor
51    */
 
52  18 toggle public WS1Client()
53    {
54  18 super();
55    }
56   
57    /**
58    * initialise WSClient service information attributes from the service handle
59    *
60    * @param sh
61    * @return the service instance information GUI for this client and job.
62    */
 
63  0 toggle protected WebserviceInfo setWebService(ServiceHandle sh)
64    {
65  0 return setWebService(sh, false);
66    }
67   
68    /**
69    * initialise WSClient service information attributes from the service handle
70    *
71    * @param sh
72    * @param headless
73    * true implies no GUI objects will be created.
74    * @return the service instance information GUI for this client and job.
75    */
 
76  0 toggle protected WebserviceInfo setWebService(ServiceHandle sh, boolean headless)
77    {
78  0 WebServiceName = sh.getName();
79  0 if (ServiceActions.containsKey(sh.getAbstractName()))
80    {
81  0 WebServiceJobTitle = sh.getName(); // TODO: control sh.Name specification
82    // properly
83    // add this for short names. +(String)
84    // ServiceActions.get(sh.getAbstractName());
85    }
86    else
87    {
88  0 WebServiceJobTitle = sh.getAbstractName() + " using " + sh.getName();
89   
90    }
91  0 WebServiceReference = sh.getDescription();
92  0 WsURL = sh.getEndpointURL();
93  0 WebserviceInfo wsInfo = null;
94  0 if (!headless)
95    {
96  0 wsInfo = new WebserviceInfo(WebServiceJobTitle, WebServiceReference,
97    Desktop.FRAME_MAKE_VISIBLE);
98    }
99  0 return wsInfo;
100    }
101   
102    /**
103    * convenience method to pass the serviceHandle reference that instantiated
104    * this service on to the menu entry constructor
105    *
106    * @param wsmenu
107    * the menu to which any menu entries/sub menus are to be attached
108    * @param alignFrame
109    * the alignFrame instance that provides input data for the service
110    */
 
111  8089 toggle public void attachWSMenuEntry(JMenu wsmenu, final AlignFrame alignFrame)
112    {
113  8089 if (serviceHandle == null)
114    {
115  0 throw new Error(MessageManager.getString(
116    "error.implementation_error_cannot_attach_ws_menu_entry"));
117    }
118  8089 attachWSMenuEntry(wsmenu, serviceHandle, alignFrame);
119    }
120   
121    /**
122    * method implemented by each concrete WS1Client implementation that creates
123    * menu entries that enact their service using data from alignFrame.
124    *
125    * @param wsmenu
126    * where new menu entries (and submenus) are to be attached
127    * @param serviceHandle
128    * the serviceHandle document for the service that entries are
129    * created for
130    * @param alignFrame
131    */
132    public abstract void attachWSMenuEntry(JMenu wsmenu,
133    final ServiceHandle serviceHandle, final AlignFrame alignFrame);
134   
135    }
  • Report generated by OpenClover v 4.4.1 on Thu Dec 4 2025 16:21:53 GMT using coverage data from Thu Dec 4 2025 16:21:39 GMT.
  • OpenClover is free and open-source software.