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Coverage Report

  1. Project Clover database Thu Dec 4 2025 16:11:35 GMT

Package jalview.gui

 

Code metrics

8,396
22,778
2,997
148
100
79,439
54,866
8,607
0.38
7.6
20.25
2.87
Package
jalview.gui jalview.gui 100.0 100 2.871872 2.87 0.33466974
0.3346697433.5%
 
Class
AlignFrame.PrintThread AlignFrame.PrintThread 2.0 2 2.5 2.5 0.0
0.00%
AnnotationColourChooser AnnotationColourChooser 23.0 23 2.5652175 2.57 0.0
0.00%
AppVarna.VarnaHighlighter AppVarna.VarnaHighlighter 6.0 6 1.6666666 1.67 0.0
0.00%
AppVarnaBinding AppVarnaBinding 32.0 32 1.71875 1.72 0.0
0.00%
AppVarnaBinding.BackupHolder AppVarnaBinding.BackupHolder 4.0 4 1.75 1.75 0.0
0.00%
ChannelsRenderer ChannelsRenderer 1.0 1 2.0 2 0.0
0.00%
ChimeraViewFrame ChimeraViewFrame 22.0 22 2.3636363 2.36 0.0
0.00%
ChimeraXViewFrame ChimeraXViewFrame 6.0 6 1.0 1 0.0
0.00%
CutAndPasteHtmlTransfer CutAndPasteHtmlTransfer 15.0 15 1.5333333 1.53 0.0
0.00%
CutAndPasteTransfer CutAndPasteTransfer 16.0 16 2.5 2.5 0.0
0.00%
EditNameDialog EditNameDialog 4.0 4 1.75 1.75 0.0
0.00%
FeatureEditor FeatureEditor 25.0 25 2.08 2.08 0.0
0.00%
FeatureIcon FeatureIcon 4.0 4 1.75 1.75 0.0
0.00%
FeatureTypeSettings FeatureTypeSettings 51.0 51 2.9019608 2.9 0.0
0.00%
Finder Finder 14.0 14 3.0714285 3.07 0.0
0.00%
FontChooser FontChooser 16.0 16 3.0 3 0.0
0.00%
Help Help 3.0 3 2.0 2 0.0
0.00%
IdPanel.ScrollThread IdPanel.ScrollThread 4.0 4 2.25 2.25 0.0
0.00%
JAL1353bugdemo JAL1353bugdemo 5.0 5 1.6 1.6 0.0
0.00%
JDatabaseTree JDatabaseTree 23.0 23 2.6956522 2.7 0.0
0.00%
JDatabaseTree.DbTreeRenderer JDatabaseTree.DbTreeRenderer 3.0 3 3.0 3 0.0
0.00%
JalviewChimeraBindingModel JalviewChimeraBindingModel 4.0 4 1.0 1 0.0
0.00%
JalviewChimeraXBindingModel JalviewChimeraXBindingModel 9.0 9 1.0 1 0.0
0.00%
JalviewColourChooser JalviewColourChooser 3.0 3 1.3333334 1.33 0.0
0.00%
JalviewColourChooser.ColourChooserListener JalviewColourChooser.ColourChooserListener 1.0 1 1.0 1 0.0
0.00%
LineartOptions LineartOptions 8.0 8 1.375 1.38 0.0
0.00%
MenuChooser MenuChooser 2.0 2 2.0 2 0.0
0.00%
MouseEventDemo MouseEventDemo 14.0 14 1.0 1 0.0
0.00%
MouseEventDemo.BlankArea MouseEventDemo.BlankArea 3.0 3 1.0 1 0.0
0.00%
OptsAndParamsPage OptsAndParamsPage 14.0 14 2.0714285 2.07 0.0
0.00%
OptsAndParamsPage.OptionBox OptsAndParamsPage.OptionBox 13.0 13 2.7692308 2.77 0.0
0.00%
OptsAndParamsPage.ParamBox OptsAndParamsPage.ParamBox 25.0 25 3.56 3.56 0.0
0.00%
PCAPanel.PCAPrinter PCAPanel.PCAPrinter 2.0 2 3.5 3.5 0.0
0.00%
PaSiMapPanel PaSiMapPanel 50.0 50 1.92 1.92 0.0
0.00%
PaSiMapPanel.PaSiMapPrinter PaSiMapPanel.PaSiMapPrinter 2.0 2 3.5 3.5 0.0
0.00%
Preferences.UrlListSelectionHandler Preferences.UrlListSelectionHandler 1.0 1 4.0 4 0.0
0.00%
PymolBindingModel PymolBindingModel 15.0 15 1.6 1.6 0.0
0.00%
PymolViewer PymolViewer 17.0 17 2.2941177 2.29 0.0
0.00%
RedundancyPanel RedundancyPanel 7.0 7 3.4285715 3.43 0.0
0.00%
RestInputParamEditDialog RestInputParamEditDialog 15.0 15 1.9333333 1.93 0.0
0.00%
RestServiceEditorPane RestServiceEditorPane 31.0 31 2.032258 2.03 0.0
0.00%
SeqPanel.ScrollThread SeqPanel.ScrollThread 5.0 5 2.6 2.6 0.0
0.00%
SequenceFetcher.StringPair SequenceFetcher.StringPair 6.0 6 1.0 1 0.0
0.00%
SlivkaPreferences.WSStatusCellRenderer SlivkaPreferences.WSStatusCellRenderer 1.0 1 5.0 5 0.0
0.00%
StructureChooser.CachedPDB StructureChooser.CachedPDB 4.0 4 1.25 1.25 0.0
0.00%
TextColourChooser TextColourChooser 12.0 12 1.9166666 1.92 0.0
0.00%
UserDefinedColours UserDefinedColours 20.0 20 4.25 4.25 0.0
0.00%
VamsasApplication VamsasApplication 33.0 33 4.3333335 4.33 0.0
0.00%
WebserviceInfo WebserviceInfo 42.0 42 2.2619047 2.26 0.0
0.00%
WebserviceInfo.AnimatedPanel WebserviceInfo.AnimatedPanel 4.0 4 4.0 4 0.0
0.00%
WsJobParameters WsJobParameters 41.0 41 3.0 3 0.0
0.00%
AlignExportOptions AlignExportOptions 12.0 12 1.25 1.25 0.02631579
0.026315792.6%
SequenceFetcher SequenceFetcher 35.0 35 3.142857 3.14 0.029598309
0.0295983093%
CalculationChooser CalculationChooser 33.0 33 3.3939395 3.39 0.030373832
0.0303738323%
WsParamSetManager WsParamSetManager 5.0 5 7.4 7.4 0.042944785
0.0429447854.3%
ViewSelectionMenu ViewSelectionMenu 11.0 11 2.4545455 2.45 0.05940594
0.059405945.9%
IdPanel IdPanel 19.0 19 3.4210527 3.42 0.06726457
0.067264576.7%
FeatureSettings.ColorEditor FeatureSettings.ColorEditor 7.0 7 1.7142857 1.71 0.071428575
0.0714285757.1%
AppVarna AppVarna 26.0 26 2.8846154 2.88 0.09059233
0.090592339.1%
FeatureSettings.FilterEditor FeatureSettings.FilterEditor 4.0 4 2.0 2 0.104166664
0.10416666410.4%
WsPreferences WsPreferences 27.0 27 2.851852 2.85 0.125
0.12512.5%
FeatureSettings.ColorRenderer FeatureSettings.ColorRenderer 2.0 2 3.0 3 0.13333334
0.1333333413.3%
FeatureSettings.FilterRenderer FeatureSettings.FilterRenderer 2.0 2 3.0 3 0.14285715
0.1428571514.3%
WsPreferences.JabaWSStatusRenderer WsPreferences.JabaWSStatusRenderer 2.0 2 3.0 3 0.14285715
0.1428571514.3%
SeqPanel SeqPanel 60.0 60 7.0 7 0.16634178
0.1663417816.6%
Desktop.MyDesktopManager Desktop.MyDesktopManager 16.0 16 1.1875 1.19 0.2
0.220%
BlogReader.LaunchJvBrowserOnItem BlogReader.LaunchJvBrowserOnItem 3.0 3 2.3333333 2.33 0.20833333
0.2083333320.8%
StructureChooser.PDBEntryTableModel StructureChooser.PDBEntryTableModel 8.0 8 1.875 1.88 0.21052632
0.2105263221.1%
SeqPanel.MousePos SeqPanel.MousePos 5.0 5 1.4 1.4 0.22222222
0.2222222222.2%
AnnotationPanel AnnotationPanel 42.0 42 6.047619 6.05 0.23474663
0.2347466323.5%
JvOptionPane JvOptionPane 71.0 71 3.4366198 3.44 0.24839126
0.2483912624.8%
AnnotationColumnChooser.StructureFilterPanel AnnotationColumnChooser.StructureFilterPanel 11.0 11 1.5454545 1.55 0.28985506
0.2898550629%
FeatureSettings.FeatureTableModel FeatureSettings.FeatureTableModel 11.0 11 1.3636364 1.36 0.29411766
0.2941176629.4%
Desktop.MyDesktopPane Desktop.MyDesktopPane 5.0 5 2.6 2.6 0.30952382
0.3095238231%
Preferences Preferences 47.0 47 3.2765958 3.28 0.3163017
0.316301731.6%
AlignFrame AlignFrame 301.0 301 2.7740865 2.77 0.31715718
0.3171571831.7%
UserQuestionnaireCheck UserQuestionnaireCheck 3.0 3 8.333333 8.33 0.3493976
0.349397634.9%
IdwidthAdjuster IdwidthAdjuster 11.0 11 2.090909 2.09 0.35526314
0.3552631435.5%
SplitFrame SplitFrame 51.0 51 2.3921568 2.39 0.3576159
0.357615935.8%
AnnotationLabels AnnotationLabels 52.0 52 5.0576925 5.06 0.3730315
0.373031537.3%
WsPreferences.WsUrlTableModel WsPreferences.WsUrlTableModel 6.0 6 1.1666666 1.17 0.375
0.37537.5%
StructureChooser StructureChooser 65.0 65 3.2769232 3.28 0.39576367
0.3957636739.6%
RotatableCanvas RotatableCanvas 44.0 44 2.25 2.25 0.39793283
0.3979328339.8%
AnnotationRowFilter AnnotationRowFilter 42.0 42 1.6904762 1.69 0.40528634
0.4052863440.5%
PCAPanel PCAPanel 42.0 42 1.6666666 1.67 0.41762453
0.4176245341.8%
Preferences.OptionsParam Preferences.OptionsParam 8.0 8 1.125 1.12 0.42857143
0.4285714342.9%
PopupMenu PopupMenu 103.0 103 2.3009708 2.3 0.4327957
0.432795743.3%
APQHandlers APQHandlers 1.0 1 5.0 5 0.4347826
0.434782643.5%
StructureViewer StructureViewer 28.0 28 3.0357144 3.04 0.4385382
0.438538243.9%
Desktop Desktop 144.0 144 3.3263888 3.33 0.44370124
0.4437012444.4%
SlivkaPreferences SlivkaPreferences 14.0 14 1.5 1.5 0.44594595
0.4459459544.6%
Console Console 33.0 33 3.3333333 3.33 0.47247708
0.4724770847.2%
AnnotationColumnChooser.SearchPanel AnnotationColumnChooser.SearchPanel 10.0 10 1.4 1.4 0.47457626
0.4745762647.5%
FeatureSettings FeatureSettings 66.0 66 2.621212 2.62 0.49014777
0.4901477749%
JalviewChangeSupport JalviewChangeSupport 4.0 4 1.0 1 0.5
0.550%
TreeCanvas TreeCanvas 54.0 54 5.037037 5.04 0.5048828
0.504882850.5%
PairwiseAlignPanel PairwiseAlignPanel 24.0 24 2.0833333 2.08 0.50510204
0.5051020450.5%
TreePanel TreePanel 70.0 70 1.8 1.8 0.50583655
0.5058365550.6%
CrossRefAction CrossRefAction 9.0 9 6.111111 6.11 0.51363635
0.5136363551.4%
ImageExporter ImageExporter 5.0 5 4.0 4 0.5194805
0.519480551.9%
StructureViewerBase StructureViewerBase 83.0 83 2.3975904 2.4 0.53246754
0.5324675453.2%
ProgressBar ProgressBar 16.0 16 2.4375 2.44 0.5448276
0.544827654.5%
AnnotationExporter AnnotationExporter 19.0 19 1.8947369 1.89 0.5502958
0.550295855%
ColourMenuHelper ColourMenuHelper 9.0 9 3.5555556 3.56 0.5508475
0.550847555.1%
PromptUserConfig PromptUserConfig 5.0 5 4.6 4.6 0.5568182
0.556818255.7%
AppJmol AppJmol 23.0 23 2.7826087 2.78 0.5650558
0.565055856.5%
Slider Slider 6.0 6 1.1666666 1.17 0.5652174
0.565217456.5%
AnnotationColumnChooser AnnotationColumnChooser 25.0 25 2.16 2.16 0.5812274
0.581227458.1%
AnnotationColumnChooser.FurtherActionPanel AnnotationColumnChooser.FurtherActionPanel 6.0 6 1.1666666 1.17 0.5862069
0.586206958.6%
OverviewPanel OverviewPanel 25.0 25 1.88 1.88 0.60588235
0.6058823560.6%
AppJmolBinding AppJmolBinding 18.0 18 2.2222223 2.22 0.60747665
0.6074766560.7%
JalviewDialog JalviewDialog 7.0 7 1.4285715 1.43 0.6097561
0.609756161%
BlogReader BlogReader 39.0 39 2.5384614 2.54 0.6160221
0.616022161.6%
PaintRefresher PaintRefresher 7.0 7 5.571429 5.57 0.6184211
0.618421161.8%
SequenceRenderer SequenceRenderer 9.0 9 6.888889 6.89 0.625
0.62562.5%
SliderPanel SliderPanel 29.0 29 2.4827585 2.48 0.6356589
0.635658963.6%
AlignmentPanel AlignmentPanel 84.0 84 2.7142856 2.71 0.67053854
0.6705385467.1%
AlignViewport AlignViewport 51.0 51 2.372549 2.37 0.6720554
0.672055467.2%
JvSwingUtils JvSwingUtils 19.0 19 2.2105262 2.21 0.6758621
0.675862167.6%
SeqCanvas SeqCanvas 40.0 40 5.275 5.28 0.6852227
0.685222768.5%
Help.HelpId Help.HelpId 3.0 3 1.0 1 0.71428573
0.7142857371.4%
QuitHandler QuitHandler 14.0 14 4.642857 4.64 0.732852
0.73285273.3%
ScalePanel ScalePanel 19.0 19 3.0526316 3.05 0.73333335
0.7333333573.3%
AssociatePdbFileWithSeq AssociatePdbFileWithSeq 3.0 3 3.0 3 0.75
0.7575%
SplashScreen SplashScreen 9.0 9 3.1111112 3.11 0.7761194
0.776119477.6%
JalviewBooleanRadioButtons JalviewBooleanRadioButtons 14.0 14 1.0 1 0.7837838
0.783783878.4%
OverviewCanvas OverviewCanvas 10.0 10 2.8 2.8 0.79310346
0.7931034679.3%
IdCanvas IdCanvas 17.0 17 4.529412 4.53 0.86378735
0.8637873586.4%
SplashScreen.SplashImage SplashScreen.SplashImage 3.0 3 1.6666666 1.67 0.88235295
0.8823529588.2%
ItemsRenderer ItemsRenderer 1.0 1 4.0 4 0.8888889
0.888888988.9%
OOMWarning OOMWarning 3.0 3 1.6666666 1.67 0.8888889
0.888888988.9%
AnnotationChooser AnnotationChooser 33.0 33 1.7878788 1.79 0.9066667
0.906666790.7%
TreePanel.TreeLoader TreePanel.TreeLoader 2.0 2 6.0 6 0.9148936
0.914893691.5%
AppJmol.RenderPanel AppJmol.RenderPanel 1.0 1 10.0 10 0.9189189
0.918918991.9%
StructureViewer.ViewerType StructureViewer.ViewerType 2.0 2 2.0 2 0.9285714
0.928571492.9%
ProgressPanel ProgressPanel 3.0 3 2.3333333 2.33 0.9756098
0.975609897.6%
ComboBoxTooltipRenderer ComboBoxTooltipRenderer 2.0 2 2.5 2.5 1.0
1.0100%
FeatureRenderer FeatureRenderer 1.0 1 4.0 4 1.0
1.0100%
This package contains 10 empty classes or interfaces which are not listed.
  • Report generated by OpenClover v 4.4.1 on Thu Dec 4 2025 16:21:53 GMT using coverage data from Thu Dec 4 2025 16:21:39 GMT.
  • OpenClover is free and open-source software.