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jalviewX

  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT
  2. Package jalview.schemes

File HelixColourScheme.java

 

Coverage histogram

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0% of files have more coverage

Code metrics

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Classes

Class Line # Actions
HelixColourScheme 30 5 5 0
1.0100%
 

Contributing tests

This file is covered by 83 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.schemes;
22   
23    import jalview.datamodel.AnnotatedCollectionI;
24    import jalview.datamodel.SequenceCollectionI;
25    import jalview.datamodel.SequenceI;
26   
27    import java.awt.Color;
28    import java.util.Map;
29   
 
30    public class HelixColourScheme extends ScoreColourScheme
31    {
 
32  15 toggle public HelixColourScheme()
33    {
34  15 super(ResidueProperties.aaIndex, ResidueProperties.helix,
35    ResidueProperties.helixmin, ResidueProperties.helixmax);
36    }
37   
 
38  360 toggle @Override
39    public Color makeColour(float c)
40    {
41  360 return new Color(c, (float) 1.0 - c, c);
42    }
43   
 
44  410 toggle @Override
45    public boolean isPeptideSpecific()
46    {
47  410 return true;
48    }
49   
 
50  226 toggle @Override
51    public String getSchemeName()
52    {
53  226 return JalviewColourScheme.Helix.toString();
54    }
55   
56    /**
57    * Returns a new instance of this colour scheme with which the given data may
58    * be coloured
59    */
 
60  8 toggle @Override
61    public ColourSchemeI getInstance(AnnotatedCollectionI coll,
62    Map<SequenceI, SequenceCollectionI> hrs)
63    {
64  8 return new HelixColourScheme();
65    }
66    }
  • Report generated by OpenClover v 4.2.1 on Wed Oct 31 2018 15:15:54 GMT using coverage data from Wed Oct 31 2018 15:15:47 GMT.
  • Clover free edition.