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jalviewX

  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT
  2. Package jalview.ws.dbsources

File RfamSeed.java

 

Coverage histogram

../../../img/srcFileCovDistChart6.png
35% of files have more coverage

Code metrics

0
7
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77
38
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Classes

Class Line # Actions
RfamSeed 29 7 7 6
0.571428657.1%
 

Contributing tests

This file is covered by 77 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.ws.dbsources;
22   
23    /**
24    * Flyweight class specifying retrieval of Seed family alignments from RFAM
25    *
26    * @author Lauren Michelle Lui
27    *
28    */
 
29    public class RfamSeed extends Rfam
30    {
 
31  8 toggle public RfamSeed()
32    {
33  8 super();
34    }
35   
 
36  2 toggle @Override
37    public String getURLSuffix()
38    {
39    // to download gzipped file add '?gzip=1'
40  2 return "/alignment/stockholm";
41    }
42   
43    /*
44    * (non-Javadoc)
45    *
46    * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
47    */
 
48  2222 toggle @Override
49    public String getDbName()
50    {
51  2222 return "RFAM (Seed)";
52    }
53   
 
54  1114 toggle @Override
55    public String getDbSource()
56    {
57  1114 return getDbName(); // so we have unique DbSource string.
58    }
59   
 
60  0 toggle @Override
61    public String getTestQuery()
62    {
63  0 return "RF00014";
64    } // http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
65   
 
66  0 toggle @Override
67    public String getDbVersion()
68    {
69  0 return null;
70    }
71   
 
72  0 toggle @Override
73    public int getTier()
74    {
75  0 return 0;
76    }
77    }
  • Report generated by OpenClover v 4.2.1 on Wed Oct 31 2018 15:15:54 GMT using coverage data from Wed Oct 31 2018 15:15:47 GMT.
  • Clover free edition.