1 |
|
|
2 |
|
|
3 |
|
|
4 |
|
|
5 |
|
|
6 |
|
|
7 |
|
|
8 |
|
|
9 |
|
package jalview.xml.binding.jalview; |
10 |
|
|
11 |
|
import javax.xml.bind.JAXBElement; |
12 |
|
import javax.xml.bind.annotation.XmlElementDecl; |
13 |
|
import javax.xml.bind.annotation.XmlRegistry; |
14 |
|
import javax.xml.namespace.QName; |
15 |
|
|
16 |
|
|
17 |
|
|
18 |
|
|
19 |
|
|
20 |
|
|
21 |
|
|
22 |
|
|
23 |
|
|
24 |
|
|
25 |
|
|
26 |
|
|
27 |
|
|
28 |
|
|
29 |
|
|
30 |
|
|
31 |
|
@XmlRegistry |
|
|
| 6.3% |
Uncovered Elements: 104 (111) |
Complexity: 56 |
Complexity Density: 1.02 |
|
32 |
|
public class ObjectFactory { |
33 |
|
|
34 |
|
private final static QName _WebServiceParameterSet_QNAME = new QName("www.jalview.org/xml/wsparamset", "WebServiceParameterSet"); |
35 |
|
private final static QName _JalviewModel_QNAME = new QName("www.jalview.org", "JalviewModel"); |
36 |
|
private final static QName _JalviewUserColours_QNAME = new QName("www.jalview.org/colours", "JalviewUserColours"); |
37 |
|
|
38 |
|
|
39 |
|
|
40 |
|
|
41 |
|
|
|
|
| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
42 |
81 |
public ObjectFactory() {... |
43 |
|
} |
44 |
|
|
45 |
|
|
46 |
|
@link |
47 |
|
|
48 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
49 |
0 |
public AlcodonFrame createAlcodonFrame() {... |
50 |
0 |
return new AlcodonFrame(); |
51 |
|
} |
52 |
|
|
53 |
|
|
54 |
|
@link |
55 |
|
|
56 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
57 |
0 |
public MapListType createMapListType() {... |
58 |
0 |
return new MapListType(); |
59 |
|
} |
60 |
|
|
61 |
|
|
62 |
|
@link |
63 |
|
|
64 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
65 |
0 |
public Sequence createSequence() {... |
66 |
0 |
return new Sequence(); |
67 |
|
} |
68 |
|
|
69 |
|
|
70 |
|
@link |
71 |
|
|
72 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
73 |
0 |
public Annotation createAnnotation() {... |
74 |
0 |
return new Annotation(); |
75 |
|
} |
76 |
|
|
77 |
|
|
78 |
|
@link |
79 |
|
|
80 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
81 |
0 |
public SequenceSet createSequenceSet() {... |
82 |
0 |
return new SequenceSet(); |
83 |
|
} |
84 |
|
|
85 |
|
|
86 |
|
@link |
87 |
|
|
88 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
89 |
0 |
public FeatureMatcherSet createFeatureMatcherSet() {... |
90 |
0 |
return new FeatureMatcherSet(); |
91 |
|
} |
92 |
|
|
93 |
|
|
94 |
|
@link |
95 |
|
|
96 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
97 |
0 |
public JalviewUserColours createJalviewUserColours() {... |
98 |
0 |
return new JalviewUserColours(); |
99 |
|
} |
100 |
|
|
101 |
|
|
102 |
|
@link |
103 |
|
|
104 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
105 |
0 |
public Pdbentry createPdbentry() {... |
106 |
0 |
return new Pdbentry(); |
107 |
|
} |
108 |
|
|
109 |
|
|
110 |
|
@link |
111 |
|
|
112 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
113 |
0 |
public Feature createFeature() {... |
114 |
0 |
return new Feature(); |
115 |
|
} |
116 |
|
|
117 |
|
|
118 |
|
@link |
119 |
|
|
120 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
121 |
45 |
public JalviewModel createJalviewModel() {... |
122 |
45 |
return new JalviewModel(); |
123 |
|
} |
124 |
|
|
125 |
|
|
126 |
|
@link |
127 |
|
|
128 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
129 |
0 |
public JalviewModel.FeatureSettings createJalviewModelFeatureSettings() {... |
130 |
0 |
return new JalviewModel.FeatureSettings(); |
131 |
|
} |
132 |
|
|
133 |
|
|
134 |
|
@link |
135 |
|
|
136 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
137 |
0 |
public JalviewModel.PcaViewer createJalviewModelPcaViewer() {... |
138 |
0 |
return new JalviewModel.PcaViewer(); |
139 |
|
} |
140 |
|
|
141 |
|
|
142 |
|
@link |
143 |
|
|
144 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
145 |
0 |
public JalviewModel.Viewport createJalviewModelViewport() {... |
146 |
0 |
return new JalviewModel.Viewport(); |
147 |
|
} |
148 |
|
|
149 |
|
|
150 |
|
@link |
151 |
|
|
152 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
153 |
0 |
public JalviewModel.JSeq createJalviewModelJSeq() {... |
154 |
0 |
return new JalviewModel.JSeq(); |
155 |
|
} |
156 |
|
|
157 |
|
|
158 |
|
@link |
159 |
|
|
160 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
161 |
0 |
public JalviewModel.JSeq.RnaViewer createJalviewModelJSeqRnaViewer() {... |
162 |
0 |
return new JalviewModel.JSeq.RnaViewer(); |
163 |
|
} |
164 |
|
|
165 |
|
|
166 |
|
@link |
167 |
|
|
168 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
169 |
0 |
public JalviewModel.JSeq.Pdbids createJalviewModelJSeqPdbids() {... |
170 |
0 |
return new JalviewModel.JSeq.Pdbids(); |
171 |
|
} |
172 |
|
|
173 |
|
|
174 |
|
@link |
175 |
|
|
176 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
177 |
0 |
public DoubleMatrix createDoubleMatrix() {... |
178 |
0 |
return new DoubleMatrix(); |
179 |
|
} |
180 |
|
|
181 |
|
|
182 |
|
@link |
183 |
|
|
184 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
185 |
0 |
public AnnotationColourScheme createAnnotationColourScheme() {... |
186 |
0 |
return new AnnotationColourScheme(); |
187 |
|
} |
188 |
|
|
189 |
|
|
190 |
|
@link |
191 |
|
|
192 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
193 |
0 |
public PcaDataType createPcaDataType() {... |
194 |
0 |
return new PcaDataType(); |
195 |
|
} |
196 |
|
|
197 |
|
|
198 |
|
@link |
199 |
|
|
200 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
201 |
0 |
public DoubleVector createDoubleVector() {... |
202 |
0 |
return new DoubleVector(); |
203 |
|
} |
204 |
|
|
205 |
|
|
206 |
|
@link |
207 |
|
|
208 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
209 |
0 |
public AlcodonFrame.Alcodon createAlcodonFrameAlcodon() {... |
210 |
0 |
return new AlcodonFrame.Alcodon(); |
211 |
|
} |
212 |
|
|
213 |
|
|
214 |
|
@link |
215 |
|
|
216 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
217 |
0 |
public AlcodonFrame.AlcodMap createAlcodonFrameAlcodMap() {... |
218 |
0 |
return new AlcodonFrame.AlcodMap(); |
219 |
|
} |
220 |
|
|
221 |
|
|
222 |
|
@link |
223 |
|
|
224 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
225 |
0 |
public AnnotationElement createAnnotationElement() {... |
226 |
0 |
return new AnnotationElement(); |
227 |
|
} |
228 |
|
|
229 |
|
|
230 |
|
@link |
231 |
|
|
232 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
233 |
0 |
public Mapping createMapping() {... |
234 |
0 |
return new Mapping(); |
235 |
|
} |
236 |
|
|
237 |
|
|
238 |
|
@link |
239 |
|
|
240 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
241 |
0 |
public MapListType.MapListFrom createMapListTypeMapListFrom() {... |
242 |
0 |
return new MapListType.MapListFrom(); |
243 |
|
} |
244 |
|
|
245 |
|
|
246 |
|
@link |
247 |
|
|
248 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
249 |
0 |
public MapListType.MapListTo createMapListTypeMapListTo() {... |
250 |
0 |
return new MapListType.MapListTo(); |
251 |
|
} |
252 |
|
|
253 |
|
|
254 |
|
@link |
255 |
|
|
256 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
257 |
0 |
public SequenceType createSequenceType() {... |
258 |
0 |
return new SequenceType(); |
259 |
|
} |
260 |
|
|
261 |
|
|
262 |
|
@link |
263 |
|
|
264 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
265 |
0 |
public Sequence.DBRef createSequenceDBRef() {... |
266 |
0 |
return new Sequence.DBRef(); |
267 |
|
} |
268 |
|
|
269 |
|
|
270 |
|
@link |
271 |
|
|
272 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
273 |
0 |
public Annotation.ThresholdLine createAnnotationThresholdLine() {... |
274 |
0 |
return new Annotation.ThresholdLine(); |
275 |
|
} |
276 |
|
|
277 |
|
|
278 |
|
@link |
279 |
|
|
280 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
281 |
0 |
public Annotation.Property createAnnotationProperty() {... |
282 |
0 |
return new Annotation.Property(); |
283 |
|
} |
284 |
|
|
285 |
|
|
286 |
|
@link |
287 |
|
|
288 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
289 |
0 |
public SequenceSet.SequenceSetProperties createSequenceSetSequenceSetProperties() {... |
290 |
0 |
return new SequenceSet.SequenceSetProperties(); |
291 |
|
} |
292 |
|
|
293 |
|
|
294 |
|
@link |
295 |
|
|
296 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
297 |
0 |
public VAMSAS createVAMSAS() {... |
298 |
0 |
return new VAMSAS(); |
299 |
|
} |
300 |
|
|
301 |
|
|
302 |
|
@link |
303 |
|
|
304 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
305 |
0 |
public FeatureMatcher createFeatureMatcher() {... |
306 |
0 |
return new FeatureMatcher(); |
307 |
|
} |
308 |
|
|
309 |
|
|
310 |
|
@link |
311 |
|
|
312 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
313 |
0 |
public WebServiceParameterSet createWebServiceParameterSet() {... |
314 |
0 |
return new WebServiceParameterSet(); |
315 |
|
} |
316 |
|
|
317 |
|
|
318 |
|
@link |
319 |
|
|
320 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
321 |
0 |
public FeatureMatcherSet.CompoundMatcher createFeatureMatcherSetCompoundMatcher() {... |
322 |
0 |
return new FeatureMatcherSet.CompoundMatcher(); |
323 |
|
} |
324 |
|
|
325 |
|
|
326 |
|
@link |
327 |
|
|
328 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
329 |
0 |
public JalviewUserColours.Colour createJalviewUserColoursColour() {... |
330 |
0 |
return new JalviewUserColours.Colour(); |
331 |
|
} |
332 |
|
|
333 |
|
|
334 |
|
@link |
335 |
|
|
336 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
337 |
0 |
public JalviewUserColours.Filter createJalviewUserColoursFilter() {... |
338 |
0 |
return new JalviewUserColours.Filter(); |
339 |
|
} |
340 |
|
|
341 |
|
|
342 |
|
@link |
343 |
|
|
344 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
345 |
0 |
public Pdbentry.Property createPdbentryProperty() {... |
346 |
0 |
return new Pdbentry.Property(); |
347 |
|
} |
348 |
|
|
349 |
|
|
350 |
|
@link |
351 |
|
|
352 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
353 |
0 |
public Feature.OtherData createFeatureOtherData() {... |
354 |
0 |
return new Feature.OtherData(); |
355 |
|
} |
356 |
|
|
357 |
|
|
358 |
|
@link |
359 |
|
|
360 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
361 |
0 |
public JalviewModel.JGroup createJalviewModelJGroup() {... |
362 |
0 |
return new JalviewModel.JGroup(); |
363 |
|
} |
364 |
|
|
365 |
|
|
366 |
|
@link |
367 |
|
|
368 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
369 |
0 |
public JalviewModel.UserColours createJalviewModelUserColours() {... |
370 |
0 |
return new JalviewModel.UserColours(); |
371 |
|
} |
372 |
|
|
373 |
|
|
374 |
|
@link |
375 |
|
|
376 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
377 |
0 |
public JalviewModel.Tree createJalviewModelTree() {... |
378 |
0 |
return new JalviewModel.Tree(); |
379 |
|
} |
380 |
|
|
381 |
|
|
382 |
|
@link |
383 |
|
|
384 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
385 |
0 |
public JalviewModel.FeatureSettings.Setting createJalviewModelFeatureSettingsSetting() {... |
386 |
0 |
return new JalviewModel.FeatureSettings.Setting(); |
387 |
|
} |
388 |
|
|
389 |
|
|
390 |
|
@link |
391 |
|
|
392 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
393 |
0 |
public JalviewModel.FeatureSettings.Group createJalviewModelFeatureSettingsGroup() {... |
394 |
0 |
return new JalviewModel.FeatureSettings.Group(); |
395 |
|
} |
396 |
|
|
397 |
|
|
398 |
|
@link |
399 |
|
|
400 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
401 |
0 |
public JalviewModel.PcaViewer.SequencePoint createJalviewModelPcaViewerSequencePoint() {... |
402 |
0 |
return new JalviewModel.PcaViewer.SequencePoint(); |
403 |
|
} |
404 |
|
|
405 |
|
|
406 |
|
@link |
407 |
|
|
408 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
409 |
0 |
public JalviewModel.PcaViewer.Axis createJalviewModelPcaViewerAxis() {... |
410 |
0 |
return new JalviewModel.PcaViewer.Axis(); |
411 |
|
} |
412 |
|
|
413 |
|
|
414 |
|
@link |
415 |
|
|
416 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
417 |
0 |
public JalviewModel.PcaViewer.SeqPointMin createJalviewModelPcaViewerSeqPointMin() {... |
418 |
0 |
return new JalviewModel.PcaViewer.SeqPointMin(); |
419 |
|
} |
420 |
|
|
421 |
|
|
422 |
|
@link |
423 |
|
|
424 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
425 |
0 |
public JalviewModel.PcaViewer.SeqPointMax createJalviewModelPcaViewerSeqPointMax() {... |
426 |
0 |
return new JalviewModel.PcaViewer.SeqPointMax(); |
427 |
|
} |
428 |
|
|
429 |
|
|
430 |
|
@link |
431 |
|
|
432 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
433 |
0 |
public JalviewModel.Viewport.HiddenColumns createJalviewModelViewportHiddenColumns() {... |
434 |
0 |
return new JalviewModel.Viewport.HiddenColumns(); |
435 |
|
} |
436 |
|
|
437 |
|
|
438 |
|
@link |
439 |
|
|
440 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
441 |
0 |
public JalviewModel.Viewport.CalcIdParam createJalviewModelViewportCalcIdParam() {... |
442 |
0 |
return new JalviewModel.Viewport.CalcIdParam(); |
443 |
|
} |
444 |
|
|
445 |
|
|
446 |
|
@link |
447 |
|
|
448 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
449 |
0 |
public JalviewModel.JSeq.RnaViewer.SecondaryStructure createJalviewModelJSeqRnaViewerSecondaryStructure() {... |
450 |
0 |
return new JalviewModel.JSeq.RnaViewer.SecondaryStructure(); |
451 |
|
} |
452 |
|
|
453 |
|
|
454 |
|
@link |
455 |
|
|
456 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
457 |
0 |
public JalviewModel.JSeq.Pdbids.StructureState createJalviewModelJSeqPdbidsStructureState() {... |
458 |
0 |
return new JalviewModel.JSeq.Pdbids.StructureState(); |
459 |
|
} |
460 |
|
|
461 |
|
|
462 |
|
@link@link |
463 |
|
|
464 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
465 |
0 |
@XmlElementDecl(namespace = "www.jalview.org/xml/wsparamset", name = "WebServiceParameterSet")... |
466 |
|
public JAXBElement<WebServiceParameterSet> createWebServiceParameterSet(WebServiceParameterSet value) { |
467 |
0 |
return new JAXBElement<WebServiceParameterSet>(_WebServiceParameterSet_QNAME, WebServiceParameterSet.class, null, value); |
468 |
|
} |
469 |
|
|
470 |
|
|
471 |
|
@link@link |
472 |
|
|
473 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
474 |
35 |
@XmlElementDecl(namespace = "www.jalview.org", name = "JalviewModel")... |
475 |
|
public JAXBElement<JalviewModel> createJalviewModel(JalviewModel value) { |
476 |
35 |
return new JAXBElement<JalviewModel>(_JalviewModel_QNAME, JalviewModel.class, null, value); |
477 |
|
} |
478 |
|
|
479 |
|
|
480 |
|
@link@link |
481 |
|
|
482 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
483 |
1 |
@XmlElementDecl(namespace = "www.jalview.org/colours", name = "JalviewUserColours")... |
484 |
|
public JAXBElement<JalviewUserColours> createJalviewUserColours(JalviewUserColours value) { |
485 |
1 |
return new JAXBElement<JalviewUserColours>(_JalviewUserColours_QNAME, JalviewUserColours.class, null, value); |
486 |
|
} |
487 |
|
|
488 |
|
} |