Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
Pdbentry	58	9	8	1.0100%	Show methods
Pdbentry.Property	190	4	4	1.0100%	Show methods

Class Pdbentry

Class Pdbentry	Line # 58	Total Statements 9	Complexity 8	TOTAL Coverage 1.0100%
getProperty() : List<Pdbentry.Property>   getProperty() : List<Pdbentry.Property>	9090	3.03	2.02	1.0 1.0100%
getId() : String   getId() : String	105105	1.01	1.01	1.0 1.0100%
setId(String) : void   setId(String) : void	117117	1.01	1.01	1.0 1.0100%
getType() : String   getType() : String	129129	1.01	1.01	1.0 1.0100%
setType(String) : void   setType(String) : void	141141	1.01	1.01	1.0 1.0100%
getFile() : String   getFile() : String	153153	1.01	1.01	1.0 1.0100%
setFile(String) : void   setFile(String) : void	165165	1.01	1.01	1.0 1.0100%

 

Class Pdbentry.Property

Class Pdbentry.Property	Line # 190	Total Statements 4	Complexity 4	TOTAL Coverage 1.0100%
getName() : String   getName() : String	205205	1.01	1.01	1.0 1.0100%
setName(String) : void   setName(String) : void	217217	1.01	1.01	1.0 1.0100%
getValue() : String   getValue() : String	229229	1.01	1.01	1.0 1.0100%
setValue(String) : void   setValue(String) : void	241241	1.01	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	1.0	jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews	1PASS
	1.0	jalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings	1PASS
	1.0	jalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntry	1PASS
	1.0	jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation	1PASS
	0.42307693	jalview.project.Jalview2xmlTests.gatherViewsHerejalview.project.Jalview2xmlTests.gatherViewsHere	1PASS
	0.42307693	jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice	1PASS
	0.42307693	jalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMade	1PASS
	0.42307693	jalview.project.Jalview2xmlTests.testCopyViewSettingsjalview.project.Jalview2xmlTests.testCopyViewSettings	1PASS
	0.42307693	jalview.project.Jalview2xmlTests.viewRefPdbAnnotationjalview.project.Jalview2xmlTests.viewRefPdbAnnotation	1PASS

 

Source view

1		//
2		// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
3		// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
4		// Any modifications to this file will be lost upon recompilation of the source schema.
5		// Generated on: 2019.06.07 at 02:21:15 PM BST
6		//
7
8
9		package jalview.xml.binding.jalview;
10
11		import java.util.ArrayList;
12		import java.util.List;
13		import javax.xml.bind.annotation.XmlAccessType;
14		import javax.xml.bind.annotation.XmlAccessorType;
15		import javax.xml.bind.annotation.XmlAttribute;
16		import javax.xml.bind.annotation.XmlSeeAlso;
17		import javax.xml.bind.annotation.XmlType;
18
19
20		/**
21		* <p>Java class for pdbentry complex type.
22		*
23		* <p>The following schema fragment specifies the expected content contained within this class.
24		*
25		* <pre>
26		* &lt;complexType name="pdbentry">
27		* &lt;complexContent>
28		* &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
29		* &lt;sequence maxOccurs="unbounded" minOccurs="0">
30		* &lt;element name="property" maxOccurs="unbounded" minOccurs="0">
31		* &lt;complexType>
32		* &lt;complexContent>
33		* &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
34		* &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
35		* &lt;attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
36		* &lt;/restriction>
37		* &lt;/complexContent>
38		* &lt;/complexType>
39		* &lt;/element>
40		* &lt;/sequence>
41		* &lt;attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
42		* &lt;attribute name="type" type="{http://www.w3.org/2001/XMLSchema}string" />
43		* &lt;attribute name="file" type="{http://www.w3.org/2001/XMLSchema}string" />
44		* &lt;/restriction>
45		* &lt;/complexContent>
46		* &lt;/complexType>
47		* </pre>
48		*
49		*
50		*/
51		@XmlAccessorType(XmlAccessType.FIELD)
52		@XmlType(name = "pdbentry", namespace = "www.jalview.org", propOrder = {
53		"property"
54		})
55		@XmlSeeAlso({
56		jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids.class
57		})
		100% Uncovered Elements: 0 (18) Complexity: 8 Complexity Density: 0.89
58		public class Pdbentry {
59
60		protected List<Pdbentry.Property> property;
61		@XmlAttribute(name = "id", required = true)
62		protected String id;
63		@XmlAttribute(name = "type")
64		protected String type;
65		@XmlAttribute(name = "file")
66		protected String file;
67
68		/**
69		* Gets the value of the property property.
70		*
71		* <p>
72		* This accessor method returns a reference to the live list,
73		* not a snapshot. Therefore any modification you make to the
74		* returned list will be present inside the JAXB object.
75		* This is why there is not a <CODE>set</CODE> method for the property property.
76		*
77		* <p>
78		* For example, to add a new item, do as follows:
79		* <pre>
80		* getProperty().add(newItem);
81		* </pre>
82		*
83		*
84		* <p>
85		* Objects of the following type(s) are allowed in the list
86		* {@link Pdbentry.Property }
87		*
88		*
89		*/
		100% Uncovered Elements: 0 (5) Complexity: 2 Complexity Density: 0.67
90	300	public List<Pdbentry.Property> getProperty() {...
91	300	if (property == null) {
92	278	property = new ArrayList<Pdbentry.Property>();
93		}
94	300	return this.property;
95		}
96
97		/**
98		* Gets the value of the id property.
99		*
100		* @return
101		* possible object is
102		* {@link String }
103		*
104		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
105	568	public String getId() {...
106	568	return id;
107		}
108
109		/**
110		* Sets the value of the id property.
111		*
112		* @param value
113		* allowed object is
114		* {@link String }
115		*
116		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
117	62	public void setId(String value) {...
118	62	this.id = value;
119		}
120
121		/**
122		* Gets the value of the type property.
123		*
124		* @return
125		* possible object is
126		* {@link String }
127		*
128		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
129	330	public String getType() {...
130	330	return type;
131		}
132
133		/**
134		* Sets the value of the type property.
135		*
136		* @param value
137		* allowed object is
138		* {@link String }
139		*
140		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
141	62	public void setType(String value) {...
142	62	this.type = value;
143		}
144
145		/**
146		* Gets the value of the file property.
147		*
148		* @return
149		* possible object is
150		* {@link String }
151		*
152		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
153	642	public String getFile() {...
154	642	return file;
155		}
156
157		/**
158		* Sets the value of the file property.
159		*
160		* @param value
161		* allowed object is
162		* {@link String }
163		*
164		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
165	46	public void setFile(String value) {...
166	46	this.file = value;
167		}
168
169
170		/**
171		* <p>Java class for anonymous complex type.
172		*
173		* <p>The following schema fragment specifies the expected content contained within this class.
174		*
175		* <pre>
176		* &lt;complexType>
177		* &lt;complexContent>
178		* &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
179		* &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
180		* &lt;attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
181		* &lt;/restriction>
182		* &lt;/complexContent>
183		* &lt;/complexType>
184		* </pre>
185		*
186		*
187		*/
188		@XmlAccessorType(XmlAccessType.FIELD)
189		@XmlType(name = "")
		100% Uncovered Elements: 0 (8) Complexity: 4 Complexity Density: 1
190		public static class Property {
191
192		@XmlAttribute(name = "name", required = true)
193		protected String name;
194		@XmlAttribute(name = "value", required = true)
195		protected String value;
196
197		/**
198		* Gets the value of the name property.
199		*
200		* @return
201		* possible object is
202		* {@link String }
203		*
204		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
205	22	public String getName() {...
206	22	return name;
207		}
208
209		/**
210		* Sets the value of the name property.
211		*
212		* @param value
213		* allowed object is
214		* {@link String }
215		*
216		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
217	46	public void setName(String value) {...
218	46	this.name = value;
219		}
220
221		/**
222		* Gets the value of the value property.
223		*
224		* @return
225		* possible object is
226		* {@link String }
227		*
228		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
229	22	public String getValue() {...
230	22	return value;
231		}
232
233		/**
234		* Sets the value of the value property.
235		*
236		* @param value
237		* allowed object is
238		* {@link String }
239		*
240		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
241	46	public void setValue(String value) {...
242	46	this.value = value;
243		}
244
245		}
246
247		}