Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
Mapping	59	6	6	0.550%	Show methods

Class Mapping

Class Mapping	Line # 59	Total Statements 6	Complexity 6	TOTAL Coverage 0.550%
getSequence() : Sequence   getSequence() : Sequence	7777	1.01	1.01	1.0 1.0100%
setSequence(Sequence) : void   setSequence(Sequence) : void	8989	1.01	1.01	0.0 0.00%
getDseqFor() : String   getDseqFor() : String	101101	1.01	1.01	1.0 1.0100%
setDseqFor(String) : void   setDseqFor(String) : void	113113	1.01	1.01	1.0 1.0100%
getMappingType() : String   getMappingType() : String	125125	1.01	1.01	0.0 0.00%
setMappingType(String) : void   setMappingType(String) : void	137137	1.01	1.01	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.5	jalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocusjalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocus	1PASS
	0.33333334	jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice	1PASS

 

Source view

1		//
2		// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
3		// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
4		// Any modifications to this file will be lost upon recompilation of the source schema.
5		// Generated on: 2019.06.07 at 02:21:15 PM BST
6		//
7
8
9		package jalview.xml.binding.jalview;
10
11		import javax.xml.bind.annotation.XmlAccessType;
12		import javax.xml.bind.annotation.XmlAccessorType;
13		import javax.xml.bind.annotation.XmlAttribute;
14		import javax.xml.bind.annotation.XmlElement;
15		import javax.xml.bind.annotation.XmlRootElement;
16		import javax.xml.bind.annotation.XmlType;
17
18
19		/**
20		*
21		* Represent the jalview.datamodel.Mapping object - it also provides
22		* a way of storing sequences that are mapped 'to' without adding them
23		* to the sequence set (which will mean they are then added to the alignment too).
24		*
25		*
26		* <p>Java class for anonymous complex type.
27		*
28		* <p>The following schema fragment specifies the expected content contained within this class.
29		*
30		* <pre>
31		* &lt;complexType>
32		* &lt;complexContent>
33		* &lt;extension base="{www.vamsas.ac.uk/jalview/version2}mapListType">
34		* &lt;sequence>
35		* &lt;choice minOccurs="0">
36		* &lt;element ref="{www.vamsas.ac.uk/jalview/version2}Sequence"/>
37		* &lt;element name="dseqFor">
38		* &lt;simpleType>
39		* &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string">
40		* &lt;/restriction>
41		* &lt;/simpleType>
42		* &lt;/element>
43		* &lt;/choice>
44		* &lt;/sequence>
45		* &lt;attribute name="mappingType" type="{http://www.w3.org/2001/XMLSchema}string" />
46		* &lt;/extension>
47		* &lt;/complexContent>
48		* &lt;/complexType>
49		* </pre>
50		*
51		*
52		*/
53		@XmlAccessorType(XmlAccessType.FIELD)
54		@XmlType(name = "", propOrder = {
55		"sequence",
56		"dseqFor"
57		})
58		@XmlRootElement(name = "Mapping")
		50% Uncovered Elements: 6 (12) Complexity: 6 Complexity Density: 1
59		public class Mapping
60		extends MapListType
61		{
62
63		@XmlElement(name = "Sequence")
64		protected Sequence sequence;
65		protected String dseqFor;
66		@XmlAttribute(name = "mappingType")
67		protected String mappingType;
68
69		/**
70		* Gets the value of the sequence property.
71		*
72		* @return
73		* possible object is
74		* {@link Sequence }
75		*
76		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
77	23	public Sequence getSequence() {...
78	23	return sequence;
79		}
80
81		/**
82		* Sets the value of the sequence property.
83		*
84		* @param value
85		* allowed object is
86		* {@link Sequence }
87		*
88		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
89	0	public void setSequence(Sequence value) {...
90	0	this.sequence = value;
91		}
92
93		/**
94		* Gets the value of the dseqFor property.
95		*
96		* @return
97		* possible object is
98		* {@link String }
99		*
100		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
101	69	public String getDseqFor() {...
102	69	return dseqFor;
103		}
104
105		/**
106		* Sets the value of the dseqFor property.
107		*
108		* @param value
109		* allowed object is
110		* {@link String }
111		*
112		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
113	1	public void setDseqFor(String value) {...
114	1	this.dseqFor = value;
115		}
116
117		/**
118		* Gets the value of the mappingType property.
119		*
120		* @return
121		* possible object is
122		* {@link String }
123		*
124		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
125	0	public String getMappingType() {...
126	0	return mappingType;
127		}
128
129		/**
130		* Sets the value of the mappingType property.
131		*
132		* @param value
133		* allowed object is
134		* {@link String }
135		*
136		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
137	0	public void setMappingType(String value) {...
138	0	this.mappingType = value;
139		}
140
141		}