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Coverage Report

  1. Project Clover database Thu Aug 13 2020 12:04:21 BST
  2. Package jalview.xml.binding.jalview

File Sequence.java

 

Coverage histogram

../../../../img/srcFileCovDistChart9.png
12% of files have more coverage

Code metrics

4
19
15
2
316
92
17
0.89
1.27
7.5
1.13

Classes

Class Line # Actions
Sequence 61 7 6
0.7142857371.4%
Sequence.DBRef 177 12 11
1.0100%
 

Contributing tests

This file is covered by 22 tests. .

Source view

1    //
2    // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
3    // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
4    // Any modifications to this file will be lost upon recompilation of the source schema.
5    // Generated on: 2019.06.07 at 02:21:15 PM BST
6    //
7   
8   
9    package jalview.xml.binding.jalview;
10   
11    import java.util.ArrayList;
12    import java.util.List;
13    import javax.xml.bind.annotation.XmlAccessType;
14    import javax.xml.bind.annotation.XmlAccessorType;
15    import javax.xml.bind.annotation.XmlAttribute;
16    import javax.xml.bind.annotation.XmlElement;
17    import javax.xml.bind.annotation.XmlRootElement;
18    import javax.xml.bind.annotation.XmlType;
19   
20   
21    /**
22    * <p>Java class for anonymous complex type.
23    *
24    * <p>The following schema fragment specifies the expected content contained within this class.
25    *
26    * <pre>
27    * &lt;complexType>
28    * &lt;complexContent>
29    * &lt;extension base="{www.vamsas.ac.uk/jalview/version2}SequenceType">
30    * &lt;sequence>
31    * &lt;element name="DBRef" maxOccurs="unbounded" minOccurs="0">
32    * &lt;complexType>
33    * &lt;complexContent>
34    * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
35    * &lt;sequence>
36    * &lt;element ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/>
37    * &lt;/sequence>
38    * &lt;attribute name="source" type="{http://www.w3.org/2001/XMLSchema}string" />
39    * &lt;attribute name="version" type="{http://www.w3.org/2001/XMLSchema}string" />
40    * &lt;attribute name="accessionId" type="{http://www.w3.org/2001/XMLSchema}string" />
41    * &lt;attribute name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
42    * &lt;/restriction>
43    * &lt;/complexContent>
44    * &lt;/complexType>
45    * &lt;/element>
46    * &lt;/sequence>
47    * &lt;attribute name="dsseqid" type="{http://www.w3.org/2001/XMLSchema}string" />
48    * &lt;attribute name="biotype" type="{http://www.w3.org/2001/XMLSchema}string" />
49    * &lt;/extension>
50    * &lt;/complexContent>
51    * &lt;/complexType>
52    * </pre>
53    *
54    *
55    */
56    @XmlAccessorType(XmlAccessType.FIELD)
57    @XmlType(name = "", propOrder = {
58    "dbRef"
59    })
60    @XmlRootElement(name = "Sequence")
 
61    public class Sequence
62    extends SequenceType
63    {
64   
65    @XmlElement(name = "DBRef")
66    protected List<Sequence.DBRef> dbRef;
67    @XmlAttribute(name = "dsseqid")
68    protected String dsseqid;
69    @XmlAttribute(name = "biotype")
70    protected String biotype;
71   
72    /**
73    * Gets the value of the dbRef property.
74    *
75    * <p>
76    * This accessor method returns a reference to the live list,
77    * not a snapshot. Therefore any modification you make to the
78    * returned list will be present inside the JAXB object.
79    * This is why there is not a <CODE>set</CODE> method for the dbRef property.
80    *
81    * <p>
82    * For example, to add a new item, do as follows:
83    * <pre>
84    * getDBRef().add(newItem);
85    * </pre>
86    *
87    *
88    * <p>
89    * Objects of the following type(s) are allowed in the list
90    * {@link Sequence.DBRef }
91    *
92    *
93    */
 
94  3305 toggle public List<Sequence.DBRef> getDBRef() {
95  3305 if (dbRef == null) {
96  604 dbRef = new ArrayList<Sequence.DBRef>();
97    }
98  3305 return this.dbRef;
99    }
100   
101    /**
102    * Gets the value of the dsseqid property.
103    *
104    * @return
105    * possible object is
106    * {@link String }
107    *
108    */
 
109  1592 toggle public String getDsseqid() {
110  1592 return dsseqid;
111    }
112   
113    /**
114    * Sets the value of the dsseqid property.
115    *
116    * @param value
117    * allowed object is
118    * {@link String }
119    *
120    */
 
121  496 toggle public void setDsseqid(String value) {
122  496 this.dsseqid = value;
123    }
124   
125    /**
126    * Gets the value of the biotype property.
127    *
128    * @return
129    * possible object is
130    * {@link String }
131    *
132    */
 
133  0 toggle public String getBiotype() {
134  0 return biotype;
135    }
136   
137    /**
138    * Sets the value of the biotype property.
139    *
140    * @param value
141    * allowed object is
142    * {@link String }
143    *
144    */
 
145  0 toggle public void setBiotype(String value) {
146  0 this.biotype = value;
147    }
148   
149   
150    /**
151    * <p>Java class for anonymous complex type.
152    *
153    * <p>The following schema fragment specifies the expected content contained within this class.
154    *
155    * <pre>
156    * &lt;complexType>
157    * &lt;complexContent>
158    * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
159    * &lt;sequence>
160    * &lt;element ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/>
161    * &lt;/sequence>
162    * &lt;attribute name="source" type="{http://www.w3.org/2001/XMLSchema}string" />
163    * &lt;attribute name="version" type="{http://www.w3.org/2001/XMLSchema}string" />
164    * &lt;attribute name="accessionId" type="{http://www.w3.org/2001/XMLSchema}string" />
165    * &lt;attribute name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
166    * &lt;/restriction>
167    * &lt;/complexContent>
168    * &lt;/complexType>
169    * </pre>
170    *
171    *
172    */
173    @XmlAccessorType(XmlAccessType.FIELD)
174    @XmlType(name = "", propOrder = {
175    "mapping"
176    })
 
177    public static class DBRef {
178   
179    @XmlElement(name = "Mapping")
180    protected Mapping mapping;
181    @XmlAttribute(name = "source")
182    protected String source;
183    @XmlAttribute(name = "version")
184    protected String version;
185    @XmlAttribute(name = "accessionId")
186    protected String accessionId;
187    @XmlAttribute(name = "locus")
188    protected Boolean locus;
189   
190    /**
191    * Gets the value of the mapping property.
192    *
193    * @return
194    * possible object is
195    * {@link Mapping }
196    *
197    */
 
198  1137 toggle public Mapping getMapping() {
199  1137 return mapping;
200    }
201   
202    /**
203    * Sets the value of the mapping property.
204    *
205    * @param value
206    * allowed object is
207    * {@link Mapping }
208    *
209    */
 
210  2 toggle public void setMapping(Mapping value) {
211  2 this.mapping = value;
212    }
213   
214    /**
215    * Gets the value of the source property.
216    *
217    * @return
218    * possible object is
219    * {@link String }
220    *
221    */
 
222  1091 toggle public String getSource() {
223  1091 return source;
224    }
225   
226    /**
227    * Sets the value of the source property.
228    *
229    * @param value
230    * allowed object is
231    * {@link String }
232    *
233    */
 
234  234 toggle public void setSource(String value) {
235  234 this.source = value;
236    }
237   
238    /**
239    * Gets the value of the version property.
240    *
241    * @return
242    * possible object is
243    * {@link String }
244    *
245    */
 
246  1091 toggle public String getVersion() {
247  1091 return version;
248    }
249   
250    /**
251    * Sets the value of the version property.
252    *
253    * @param value
254    * allowed object is
255    * {@link String }
256    *
257    */
 
258  234 toggle public void setVersion(String value) {
259  234 this.version = value;
260    }
261   
262    /**
263    * Gets the value of the accessionId property.
264    *
265    * @return
266    * possible object is
267    * {@link String }
268    *
269    */
 
270  1091 toggle public String getAccessionId() {
271  1091 return accessionId;
272    }
273   
274    /**
275    * Sets the value of the accessionId property.
276    *
277    * @param value
278    * allowed object is
279    * {@link String }
280    *
281    */
 
282  234 toggle public void setAccessionId(String value) {
283  234 this.accessionId = value;
284    }
285   
286    /**
287    * Gets the value of the locus property.
288    *
289    * @return
290    * possible object is
291    * {@link Boolean }
292    *
293    */
 
294  1091 toggle public boolean isLocus() {
295  1091 if (locus == null) {
296  1068 return false;
297    } else {
298  23 return locus;
299    }
300    }
301   
302    /**
303    * Sets the value of the locus property.
304    *
305    * @param value
306    * allowed object is
307    * {@link Boolean }
308    *
309    */
 
310  1 toggle public void setLocus(Boolean value) {
311  1 this.locus = value;
312    }
313   
314    }
315   
316    }
  • Report generated by OpenClover v 4.4.1 on Thu Aug 13 2020 12:06:48 BST using coverage data from Thu Aug 13 2020 12:06:40 BST.
  • OpenClover is free and open-source software.