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jalviewX

  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT
  2. Package jalview.jbgui

File GAlignmentPanel.java

 

Coverage histogram

../../img/srcFileCovDistChart10.png
0% of files have more coverage

Code metrics

0
42
2
1
135
87
3
0.07
21
2
1.5

Classes

Class Line # Actions
GAlignmentPanel 34 42 3 1
0.9772727597.7%
 

Contributing tests

This file is covered by 73 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.jbgui;
22   
23    import java.awt.BorderLayout;
24    import java.awt.Color;
25    import java.awt.Dimension;
26   
27    import javax.swing.BorderFactory;
28    import javax.swing.ButtonGroup;
29    import javax.swing.JPanel;
30    import javax.swing.JScrollBar;
31    import javax.swing.JScrollPane;
32    import javax.swing.border.Border;
33   
 
34    public class GAlignmentPanel extends JPanel
35    {
36    protected JPanel sequenceHolderPanel = new JPanel();
37   
38    protected JScrollBar vscroll = new JScrollBar();
39   
40    protected JScrollBar hscroll = new JScrollBar();
41   
42    protected JPanel seqPanelHolder = new JPanel();
43   
44    BorderLayout borderLayout1 = new BorderLayout();
45   
46    BorderLayout borderLayout3 = new BorderLayout();
47   
48    protected JPanel scalePanelHolder = new JPanel();
49   
50    protected JPanel idPanelHolder = new JPanel();
51   
52    BorderLayout borderLayout5 = new BorderLayout();
53   
54    protected JPanel idSpaceFillerPanel1 = new JPanel();
55   
56    public JPanel annotationSpaceFillerHolder = new JPanel();
57   
58    BorderLayout borderLayout6 = new BorderLayout();
59   
60    ButtonGroup buttonGroup1 = new ButtonGroup();
61   
62    BorderLayout borderLayout7 = new BorderLayout();
63   
64    JPanel hscrollHolder = new JPanel();
65   
66    BorderLayout borderLayout10 = new BorderLayout();
67   
68    protected JPanel hscrollFillerPanel = new JPanel();
69   
70    BorderLayout borderLayout11 = new BorderLayout();
71   
72    public JScrollPane annotationScroller = new JScrollPane();
73   
74    Border border1;
75   
76    BorderLayout borderLayout4 = new BorderLayout();
77   
 
78  217 toggle public GAlignmentPanel()
79    {
80  217 try
81    {
82  217 jbInit();
83    } catch (Exception e)
84    {
85  0 e.printStackTrace();
86    }
87    }
88   
 
89  217 toggle private void jbInit() throws Exception
90    {
91  217 border1 = BorderFactory.createLineBorder(Color.gray, 1);
92  217 idPanelHolder.setBorder(null);
93  217 idPanelHolder.setPreferredSize(new Dimension(70, 10));
94  217 this.setLayout(borderLayout7);
95  217 sequenceHolderPanel
96    .setMaximumSize(new Dimension(2147483647, 2147483647));
97  217 sequenceHolderPanel.setMinimumSize(new Dimension(150, 150));
98  217 sequenceHolderPanel.setPreferredSize(new Dimension(150, 150));
99  217 sequenceHolderPanel.setLayout(borderLayout3);
100  217 seqPanelHolder.setLayout(borderLayout1);
101  217 scalePanelHolder.setBackground(Color.white);
102  217 scalePanelHolder.setMinimumSize(new Dimension(10, 80));
103  217 scalePanelHolder.setPreferredSize(new Dimension(10, 30));
104  217 scalePanelHolder.setLayout(borderLayout6);
105  217 idPanelHolder.setLayout(borderLayout5);
106  217 idSpaceFillerPanel1.setBackground(Color.white);
107  217 idSpaceFillerPanel1.setPreferredSize(new Dimension(10, 30));
108  217 idSpaceFillerPanel1.setLayout(borderLayout11);
109  217 annotationSpaceFillerHolder.setBackground(Color.white);
110  217 annotationSpaceFillerHolder.setPreferredSize(new Dimension(10, 80));
111  217 annotationSpaceFillerHolder.setLayout(borderLayout4);
112  217 hscroll.setOrientation(JScrollBar.HORIZONTAL);
113  217 hscrollHolder.setLayout(borderLayout10);
114  217 hscrollFillerPanel.setBackground(Color.white);
115  217 hscrollFillerPanel.setPreferredSize(new Dimension(70, 10));
116  217 hscrollHolder.setBackground(Color.white);
117  217 annotationScroller.setBorder(null);
118  217 annotationScroller.setPreferredSize(new Dimension(10, 80));
119  217 this.setPreferredSize(new Dimension(220, 166));
120   
121  217 sequenceHolderPanel.add(scalePanelHolder, BorderLayout.NORTH);
122  217 sequenceHolderPanel.add(seqPanelHolder, BorderLayout.CENTER);
123  217 seqPanelHolder.add(vscroll, BorderLayout.EAST);
124  217 sequenceHolderPanel.add(annotationScroller, BorderLayout.SOUTH);
125   
126    // jPanel3.add(secondaryPanelHolder, BorderLayout.SOUTH);
127  217 this.add(idPanelHolder, BorderLayout.WEST);
128  217 idPanelHolder.add(idSpaceFillerPanel1, BorderLayout.NORTH);
129  217 idPanelHolder.add(annotationSpaceFillerHolder, BorderLayout.SOUTH);
130  217 this.add(hscrollHolder, BorderLayout.SOUTH);
131  217 hscrollHolder.add(hscroll, BorderLayout.CENTER);
132  217 hscrollHolder.add(hscrollFillerPanel, BorderLayout.WEST);
133  217 this.add(sequenceHolderPanel, BorderLayout.CENTER);
134    }
135    }
  • Report generated by OpenClover v 4.2.1 on Wed Oct 31 2018 15:15:54 GMT using coverage data from Wed Oct 31 2018 15:15:47 GMT.
  • Clover free edition.