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jalviewX

  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT
  2. Package jalview.ws.jws2

File JabaPreset.java

 

Coverage histogram

../../../img/srcFileCovDistChart4.png
45% of files have more coverage

Code metrics

0
13
9
1
103
69
10
0.77
1.44
9
1.11

Classes

Class Line # Actions
JabaPreset 32 13 10 13
0.409090940.9%
 

Contributing tests

This file is covered by 107 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.ws.jws2;
22   
23    import jalview.util.MessageManager;
24    import jalview.ws.jws2.jabaws2.Jws2Instance;
25    import jalview.ws.params.ArgumentI;
26    import jalview.ws.params.WsParamSetI;
27   
28    import java.util.List;
29   
30    import compbio.metadata.Preset;
31   
 
32    public class JabaPreset implements WsParamSetI
33    {
34    Preset p = null;
35   
36    Jws2Instance service;
37   
 
38  145 toggle public JabaPreset(Jws2Instance svc, Preset preset)
39    {
40  145 service = svc;
41  145 p = preset;
42    }
43   
 
44  5745 toggle @Override
45    public String getName()
46    {
47  5745 return p.getName();
48    }
49   
 
50  5600 toggle @Override
51    public String getDescription()
52    {
53  5600 return p.getDescription();
54    }
55   
 
56  0 toggle @Override
57    public String[] getApplicableUrls()
58    {
59  0 return new String[] { service.getUri() };
60    }
61   
 
62  0 toggle @Override
63    public String getSourceFile()
64    {
65  0 return null;
66    }
67   
 
68  5600 toggle @Override
69    public boolean isModifiable()
70    {
71  5600 return false;
72    }
73   
 
74  0 toggle @Override
75    public void setSourceFile(String newfile)
76    {
77  0 throw new Error(MessageManager
78    .formatMessage("error.cannot_set_source_file_for", new String[]
79    { getClass().toString() }));
80    }
81   
 
82  0 toggle @Override
83    public List<ArgumentI> getArguments()
84    {
85  0 try
86    {
87  0 return JabaParamStore.getJwsArgsfromJaba(
88    p.getArguments(service.getRunnerConfig()));
89    } catch (Exception e)
90    {
91  0 e.printStackTrace();
92  0 throw new Error(MessageManager
93    .getString("error.mismatch_service_instance_preset"));
94    }
95    }
96   
 
97  0 toggle @Override
98    public void setArguments(List<ArgumentI> args)
99    {
100  0 throw new Error(MessageManager
101    .getString("error.cannot_set_params_for_ws_preset"));
102    }
103    }
  • Report generated by OpenClover v 4.2.1 on Wed Oct 31 2018 15:15:54 GMT using coverage data from Wed Oct 31 2018 15:15:47 GMT.
  • Clover free edition.