Class | Line # | Actions | |||
---|---|---|---|---|---|
JLogger | 30 | 49 | 37 | 0.5054945350.5% |
Class JLogger |
Line # 30 |
49 |
37 |
0.5054945350.5% |
---|---|---|---|---|
isLevel(String) : boolean isLevel(String) : boolean | 5050 | 4.04 | 2.02 | 0.8333333 0.833333383.3% |
toLevel(String) : LogLevel toLevel(String) : LogLevel | 6060 | 4.04 | 2.02 | 0.5 0.550% |
getLogger(Class) : JLogger getLogger(Class) : JLogger | 7272 | 1.01 | 1.01 | 0.0 0.00% |
getLogger(Class,LogLevel) : JLogger getLogger(Class,LogLevel) : JLogger | 7777 | 1.01 | 1.01 | 0.0 0.00% |
getLogger(String) : JLogger getLogger(String) : JLogger | 8282 | 1.01 | 1.01 | 0.0 0.00% |
getLogger(String,LogLevel) : JLogger getLogger(String,LogLevel) : JLogger | 8787 | 1.01 | 2.02 | 0.0 0.00% |
JLogger() JLogger() | 9292 | 0.00 | 1.01 | -1.0 -1.0 - |
JLogger(String,LogLevel) JLogger(String,LogLevel) | 9696 | 4.04 | 1.01 | 0.0 0.00% |
registryStore() : void registryStore() : void | 104104 | 1.01 | 1.01 | 1.0 1.0100% |
registryContainsKey(String) : boolean registryContainsKey(String) : boolean | 109109 | 1.01 | 1.01 | 1.0 1.0100% |
registryGet(String) : JLogger registryGet(String) : JLogger | 114114 | 1.01 | 1.01 | 0.0 0.00% |
getLevel() : LogLevel getLevel() : LogLevel | 119119 | 1.01 | 1.01 | 1.0 1.0100% |
setLevel(LogLevel) : void setLevel(LogLevel) : void | 125125 | 3.03 | 2.02 | 0.8 0.880% |
println(LogLevel,String,Throwable) : boolean println(LogLevel,String,Throwable) : boolean | 133133 | 12.012 | 6.06 | 0.4 0.440% |
trace(String) : void trace(String) : void | 160160 | 1.01 | 1.01 | 0.0 0.00% |
trace(String,Throwable) : void trace(String,Throwable) : void | 166166 | 1.01 | 1.01 | 1.0 1.0100% |
debug(String) : void debug(String) : void | 172172 | 1.01 | 1.01 | 1.0 1.0100% |
debug(String,Throwable) : void debug(String,Throwable) : void | 178178 | 1.01 | 1.01 | 1.0 1.0100% |
info(String) : void info(String) : void | 184184 | 1.01 | 1.01 | 0.0 0.00% |
info(String,Throwable) : void info(String,Throwable) : void | 190190 | 1.01 | 1.01 | 1.0 1.0100% |
warn(String) : void warn(String) : void | 196196 | 1.01 | 1.01 | 0.0 0.00% |
warn(String,Throwable) : void warn(String,Throwable) : void | 202202 | 1.01 | 1.01 | 1.0 1.0100% |
error(String) : void error(String) : void | 208208 | 1.01 | 1.01 | 0.0 0.00% |
error(String,Throwable) : void error(String,Throwable) : void | 214214 | 1.01 | 1.01 | 1.0 1.0100% |
fatal(String) : void fatal(String) : void | 220220 | 1.01 | 1.01 | 0.0 0.00% |
fatal(String,Throwable) : void fatal(String,Throwable) : void | 226226 | 1.01 | 1.01 | 0.0 0.00% |
isDebugEnabled() : boolean isDebugEnabled() : boolean | 232232 | 1.01 | 1.01 | 1.0 1.0100% |
isTraceEnabled() : boolean isTraceEnabled() : boolean | 238238 | 1.01 | 1.01 | 1.0 1.0100% |
0.2857143
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.2857143
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.2857143
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.2857143
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.2857143
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
0.26373628
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.26373628
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.26373628
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.26373628
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResiduejalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResidue | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.26373628
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.24175824
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.24175824
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
0.24175824
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.24175824
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.24175824
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
0.24175824
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.24175824
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.24175824
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.24175824
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.24175824
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.24175824
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.24175824
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.20879121
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.20879121
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.20879121
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.20879121
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.20879121
|
jalview.bin.CommandsTest.structureImageOutputTestjalview.bin.CommandsTest.structureImageOutputTest | 1PASS | ||
0.20879121
|
jalview.bin.CommandsTest.structureImageOutputTestjalview.bin.CommandsTest.structureImageOutputTest | 1PASS | ||
0.18681319
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.18681319
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.18681319
|
jalview.bin.CommandsTest.structureImageOutputTestjalview.bin.CommandsTest.structureImageOutputTest | 1PASS | ||
0.18681319
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.18681319
|
jalview.io.BackupFilesTest.backupsEnabledRollMaxTestjalview.io.BackupFilesTest.backupsEnabledRollMaxTest | 1PASS | ||
0.18681319
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews | 1PASS | ||
0.18681319
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.18681319
|
jalview.project.Jalview2xmlTests.gatherViewsHerejalview.project.Jalview2xmlTests.gatherViewsHere | 1PASS | ||
0.18681319
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings | 1PASS | ||
0.18681319
|
jalview.bin.CommandsTest.structureImageOutputTestjalview.bin.CommandsTest.structureImageOutputTest | 1PASS | ||
0.18681319
|
jalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTestjalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTest | 1PASS | ||
0.16483517
|
jalview.io.BackupFilesTest.backupsEnabledNoRollMaxTestjalview.io.BackupFilesTest.backupsEnabledNoRollMaxTest | 1PASS | ||
0.16483517
|
jalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMol | 1PASS | ||
0.16483517
|
jalview.io.BackupFilesTest.backupsEnabledSingleFileBackupTestjalview.io.BackupFilesTest.backupsEnabledSingleFileBackupTest | 1PASS | ||
0.16483517
|
jalview.gui.AssociatePDBFileTest.testAssociatePDBFilejalview.gui.AssociatePDBFileTest.testAssociatePDBFile | 1PASS | ||
0.16483517
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntry | 1PASS | ||
0.16483517
|
jalview.io.BackupFilesTest.noBackupsEnabledTestjalview.io.BackupFilesTest.noBackupsEnabledTest | 1PASS | ||
0.16483517
|
jalview.gui.StructureChooserTest.populateFilterComboBoxTestjalview.gui.StructureChooserTest.populateFilterComboBoxTest | 1PASS | ||
0.16483517
|
jalview.project.Jalview2xmlTests.testPAEsaveRestorejalview.project.Jalview2xmlTests.testPAEsaveRestore | 1PASS | ||
0.14285715
|
jalview.gui.ScalePanelTest.testPreventNegativeStartColumnjalview.gui.ScalePanelTest.testPreventNegativeStartColumn | 1PASS | ||
0.14285715
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_noAnnotationsjalview.gui.SeqPanelTest.testFindMousePosition_wrapped_noAnnotations | 1PASS | ||
0.14285715
|
jalview.bin.argparser.ArgParserTest.parseArgsTestjalview.bin.argparser.ArgParserTest.parseArgsTest | 1PASS | ||
0.14285715
|
jalview.gui.DesktopTests.testInternalCopyPastejalview.gui.DesktopTests.testInternalCopyPaste | 1PASS | ||
0.14285715
|
jalview.schemes.ColourSchemesTest.testRegisterColourSchemejalview.schemes.ColourSchemesTest.testRegisterColourScheme | 1PASS | ||
0.14285715
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
0.14285715
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocusjalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocus | 1PASS | ||
0.14285715
|
jalview.bin.CommandsTest.headlessOrGuiImageOutputTestjalview.bin.CommandsTest.headlessOrGuiImageOutputTest | 1PASS | ||
0.14285715
|
jalview.bin.argparser.ArgParserTest.parseArgsTestjalview.bin.argparser.ArgParserTest.parseArgsTest | 1PASS | ||
0.14285715
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scales_longSequencejalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scales_longSequence | 1PASS | ||
0.14285715
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqsjalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqs | 1PASS | ||
0.14285715
|
jalview.gui.SeqPanelTest.testFindColumn_unwrappedjalview.gui.SeqPanelTest.testFindColumn_unwrapped | 1PASS | ||
0.14285715
|
jalview.structures.models.AAStructureBindingModelTest.testBuildColoursMapjalview.structures.models.AAStructureBindingModelTest.testBuildColoursMap | 1PASS | ||
0.14285715
|
jalview.gui.ScalePanelTest.testBuildPopupMenujalview.gui.ScalePanelTest.testBuildPopupMenu | 1PASS | ||
0.14285715
|
jalview.io.FeaturesFileTest.readGff3Filejalview.io.FeaturesFileTest.readGff3File | 1PASS | ||
0.14285715
|
jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice | 1PASS | ||
0.14285715
|
jalview.renderer.seqfeatures.FeatureRendererTest.testGetColourjalview.renderer.seqfeatures.FeatureRendererTest.testGetColour | 1PASS | ||
0.14285715
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverOverview | 1PASS | ||
0.14285715
|
jalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignmentjalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignment | 1PASS | ||
0.14285715
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumnjalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumn | 1PASS | ||
0.14285715
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverview | 1PASS | ||
0.14285715
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColoursjalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColours | 1PASS | ||
0.14285715
|
jalview.io.vcf.VCFLoaderTest.testDoLoadjalview.io.vcf.VCFLoaderTest.testDoLoad | 1PASS | ||
0.14285715
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_annotationsjalview.gui.SeqPanelTest.testFindMousePosition_wrapped_annotations | 1PASS | ||
0.14285715
|
jalview.io.PhylipFileTests.testInterleavedIOjalview.io.PhylipFileTests.testInterleavedIO | 1PASS | ||
0.14285715
|
jalview.commands.EditCommandTest.testCut_withFeatures_exhaustivejalview.commands.EditCommandTest.testCut_withFeatures_exhaustive | 1PASS | ||
0.14285715
|
jalview.renderer.seqfeatures.FeatureRendererTest.testIsVisiblejalview.renderer.seqfeatures.FeatureRendererTest.testIsVisible | 1PASS | ||
0.14285715
|
jalview.io.FeaturesFileTest.testParse_mixedJalviewGffjalview.io.FeaturesFileTest.testParse_mixedJalviewGff | 1PASS | ||
0.14285715
|
jalview.gui.StructureChooserTest.displayTDBQueryTestjalview.gui.StructureChooserTest.displayTDBQueryTest | 1PASS | ||
0.14285715
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
0.14285715
|
jalview.gui.FeatureSettingsTest.testSaveLoadjalview.gui.FeatureSettingsTest.testSaveLoad | 1PASS | ||
0.14285715
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_regionjalview.util.MappingUtilsTest.testMapSequenceGroup_region | 1PASS | ||
0.14285715
|
jalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjectsjalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjects | 1PASS | ||
0.14285715
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
0.14285715
|
jalview.bin.argparser.ArgParserTest.allLinkedIdsTestjalview.bin.argparser.ArgParserTest.allLinkedIdsTest | 1PASS | ||
0.14285715
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholdsjalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholds | 1PASS | ||
0.14285715
|
jalview.io.RNAMLfileTest.testRnamlToStockholmIOjalview.io.RNAMLfileTest.testRnamlToStockholmIO | 1PASS | ||
0.14285715
|
jalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeightjalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeight | 1PASS | ||
0.14285715
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scaleAbovejalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scaleAbove | 1PASS | ||
0.14285715
|
jalview.gui.AnnotationLabelsTest.testDrawLabelsjalview.gui.AnnotationLabelsTest.testDrawLabels | 1PASS | ||
0.14285715
|
jalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeaturesjalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeatures | 1PASS | ||
0.14285715
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforManyViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforManyViews | 1PASS | ||
0.14285715
|
jalview.gui.JvOptionPaneTest.showInternalConfirmDialogFamilyTestjalview.gui.JvOptionPaneTest.showInternalConfirmDialogFamilyTest | 1PASS | ||
0.14285715
|
jalview.bin.argparser.ArgParserTest.parseArgsTestjalview.bin.argparser.ArgParserTest.parseArgsTest | 1PASS | ||
0.14285715
|
jalview.bin.argparser.ArgParserTest.parseArgsTestjalview.bin.argparser.ArgParserTest.parseArgsTest | 1PASS | ||
0.14285715
|
jalview.gui.AlignmentPanelTest.testSetOverviewTitle_automaticOverviewjalview.gui.AlignmentPanelTest.testSetOverviewTitle_automaticOverview | 1PASS | ||
0.14285715
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrandjalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrand | 1PASS | ||
0.14285715
|
jalview.project.Jalview2xmlTests.testPcaViewAssociationjalview.project.Jalview2xmlTests.testPcaViewAssociation | 1PASS | ||
0.10989011
|
jalview.project.Jalview2xmlTests.testCopyViewSettingsjalview.project.Jalview2xmlTests.testCopyViewSettings | 1PASS | ||
0.10989011
|
jalview.project.Jalview2xmlTests.viewRefPdbAnnotationjalview.project.Jalview2xmlTests.viewRefPdbAnnotation | 1PASS | ||
0.10989011
|
jalview.gui.QuitHandlerTest.testUnsavedChangesjalview.gui.QuitHandlerTest.testUnsavedChanges | 1PASS | ||
0.0989011
|
jalview.util.MessageManagerTest.testGetString_invalidjalview.util.MessageManagerTest.testGetString_invalid | 1PASS | ||
0.0989011
|
jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_noAnnotationsjalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_noAnnotations | 1PASS | ||
0.0989011
|
jalview.analysis.AlignmentUtilsTests.testMapCdsToProteinjalview.analysis.AlignmentUtilsTests.testMapCdsToProtein | 1PASS | ||
0.0989011
|
jalview.datamodel.features.SequenceFeaturesTest.testGetFeaturesByOntologyjalview.datamodel.features.SequenceFeaturesTest.testGetFeaturesByOntology | 1PASS | ||
0.0989011
|
jalview.analysis.AlignmentUtilsTests.testTransferFeatures_withSelectjalview.analysis.AlignmentUtilsTests.testTransferFeatures_withSelect | 1PASS | ||
0.0989011
|
jalview.gui.AlignmentPanelTest.testCalculateIdWidth_noArgsjalview.gui.AlignmentPanelTest.testCalculateIdWidth_noArgs | 1PASS | ||
0.0989011
|
jalview.ws.dbsources.UniprotTest.testimportOfProblemEntriesjalview.ws.dbsources.UniprotTest.testimportOfProblemEntries | 1PASS | ||
0.0989011
|
jalview.util.MessageManagerTest.testFormatMessage_invalidjalview.util.MessageManagerTest.testFormatMessage_invalid | 1PASS | ||
0.0989011
|
jalview.io.gff.Gff3HelperTest.testGetDescriptionjalview.io.gff.Gff3HelperTest.testGetDescription | 1PASS | ||
0.0989011
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureAtEndjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureAtEnd | 1PASS | ||
0.0989011
|
jalview.gui.AlignFrameTest.testChangeColour_background_groupsAndThresholdsjalview.gui.AlignFrameTest.testChangeColour_background_groupsAndThresholds | 1PASS | ||
0.0989011
|
jalview.io.RNAMLfileTest.testRnamlSeqImportjalview.io.RNAMLfileTest.testRnamlSeqImport | 1PASS | ||
0.0989011
|
jalview.io.gff.InterProScanHelperTest.testProcessProteinMatchjalview.io.gff.InterProScanHelperTest.testProcessProteinMatch | 1PASS | ||
0.0989011
|
jalview.util.MessageManagerTest.testGetStringOrReturnjalview.util.MessageManagerTest.testGetStringOrReturn | 1PASS | ||
0.0989011
|
jalview.gui.AlignFrameTest.testColourThresholdActionsjalview.gui.AlignFrameTest.testColourThresholdActions | 1PASS | ||
0.0989011
|
jalview.io.FileIOTester.testIsGzipInputStreamjalview.io.FileIOTester.testIsGzipInputStream | 1PASS | ||
0.0989011
|
jalview.ext.so.SequenceOntologyTest.testIsAjalview.ext.so.SequenceOntologyTest.testIsA | 1PASS | ||
0.0989011
|
jalview.datamodel.features.SequenceFeaturesTest.testIsOntologyTermjalview.datamodel.features.SequenceFeaturesTest.testIsOntologyTerm | 1PASS | ||
0.0989011
|
jalview.fts.threedbeacons.TDBeaconsPanelTest.populateCmbSearchTargetOptionsTestjalview.fts.threedbeacons.TDBeaconsPanelTest.populateCmbSearchTargetOptionsTest | 1PASS | ||
0.0989011
|
jalview.io.gff.GffHelperFactoryTest.testGetHelperjalview.io.gff.GffHelperFactoryTest.testGetHelper | 1PASS | ||
0.08791209
|
jalview.gui.QuitHandlerTest.testNoGUIUnsavedChangesjalview.gui.QuitHandlerTest.testNoGUIUnsavedChanges | 1PASS | ||
0.08791209
|
jalview.ws.dbsources.UniprotTest.testGetUniprotSequencejalview.ws.dbsources.UniprotTest.testGetUniprotSequence | 1PASS | ||
0.08791209
|
jalview.gui.QuitHandlerTest.testWaitForSaveQuitjalview.gui.QuitHandlerTest.testWaitForSaveQuit | 1PASS | ||
0.08791209
|
jalview.gui.QuitHandlerTest.testForceQuitjalview.gui.QuitHandlerTest.testForceQuit | 1PASS | ||
0.08791209
|
jalview.project.Jalview2xmlTests.testColourByAnnotScoresjalview.project.Jalview2xmlTests.testColourByAnnotScores | 1PASS | ||
0.08791209
|
jalview.project.Jalview2xmlTests.testRNAStructureRecoveryjalview.project.Jalview2xmlTests.testRNAStructureRecovery | 1PASS | ||
0.08791209
|
jalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMade | 1PASS | ||
0.08791209
|
jalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMol | 1PASS | ||
0.08791209
|
jalview.gui.QuitHandlerTest.testSavedAlignmentChangesjalview.gui.QuitHandlerTest.testSavedAlignmentChanges | 1PASS | ||
0.08791209
|
jalview.io.BioJsHTMLOutputTest.getJalviewAlignmentAsJsonStringjalview.io.BioJsHTMLOutputTest.getJalviewAlignmentAsJsonString | 1PASS | ||
0.08791209
|
jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation | 1PASS | ||
0.08791209
|
jalview.project.Jalview2xmlTests.testTCoffeeScoresjalview.project.Jalview2xmlTests.testTCoffeeScores | 1PASS | ||
0.08791209
|
jalview.io.WindowsFileLoadAndSaveTest.loadAndSaveAlignmentjalview.io.WindowsFileLoadAndSaveTest.loadAndSaveAlignment | 1PASS | ||
0.08791209
|
jalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFiltersjalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFilters | 1PASS | ||
0.08791209
|
jalview.gui.QuitHandlerTest.testInstantQuitjalview.gui.QuitHandlerTest.testInstantQuit | 1PASS | ||
0.08791209
|
jalview.gui.QuitHandlerTest.testSavedProjectChangesjalview.gui.QuitHandlerTest.testSavedProjectChanges | 1PASS | ||
0.08791209
|
jalview.datamodel.PAEContactMatrixTest.testSeqAssociatedPAEMatrixjalview.datamodel.PAEContactMatrixTest.testSeqAssociatedPAEMatrix | 1PASS | ||
0.06593407
|
jalview.datamodel.ColumnSelectionTest.testHideColumns_withSelectionjalview.datamodel.ColumnSelectionTest.testHideColumns_withSelection | 1PASS | ||
0.06593407
|
mc_view.PDBfileTest.testParsemc_view.PDBfileTest.testParse | 1PASS | ||
0.06593407
|
jalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumnsjalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumns | 1PASS | ||
0.06593407
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeaturesjalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeatures | 1PASS | ||
0.06593407
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
0.06593407
|
jalview.datamodel.SequenceTest.testIsProteinWithXorNAmbiguityCodesjalview.datamodel.SequenceTest.testIsProteinWithXorNAmbiguityCodes | 1PASS | ||
0.06593407
|
jalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNonejalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNone | 1PASS | ||
0.06593407
|
jalview.util.imagemaker.BitmapImageSizeTest.testCacheSettingsRecoveryjalview.util.imagemaker.BitmapImageSizeTest.testCacheSettingsRecovery | 1PASS | ||
0.06593407
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInEitherOneSeqjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInEitherOneSeq | 1PASS | ||
0.06593407
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_sharedDatasetjalview.util.MappingUtilsTest.testMapSequenceGroup_sharedDataset | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseArgsTestjalview.bin.argparser.ArgParserTest.parseArgsTest | 1PASS | ||
0.06593407
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
0.06593407
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
0.06593407
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInBothSeqsjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInBothSeqs | 1PASS | ||
0.06593407
|
jalview.io.PfamFormatInputTest.testPfamFormatValidLimitsjalview.io.PfamFormatInputTest.testPfamFormatValidLimits | 1PASS | ||
0.06593407
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModeljalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel | 1PASS | ||
0.06593407
|
jalview.io.gff.GffTests.testResolveExonerateGffjalview.io.gff.GffTests.testResolveExonerateGff | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefsjalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefs | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testAddReferenceAnnotationsjalview.analysis.AlignmentUtilsTests.testAddReferenceAnnotations | 1PASS | ||
0.06593407
|
jalview.io.StockholmFileTest.dbrefOutputjalview.io.StockholmFileTest.dbrefOutput | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseArgsTestjalview.bin.argparser.ArgParserTest.parseArgsTest | 1PASS | ||
0.06593407
|
jalview.gui.AlignFrameTest.testHideFeatureColumnsjalview.gui.AlignFrameTest.testHideFeatureColumns | 1PASS | ||
0.06593407
|
jalview.io.PhylipFileTests.testInterleavedDataExtractionjalview.io.PhylipFileTests.testInterleavedDataExtraction | 1PASS | ||
0.06593407
|
jalview.controller.AlignViewControllerTest.testFindColumnsWithFeaturejalview.controller.AlignViewControllerTest.testFindColumnsWithFeature | 1PASS | ||
0.06593407
|
jalview.io.FeaturesFileTest.testPrintJalviewFormat_withFiltersjalview.io.FeaturesFileTest.testPrintJalviewFormat_withFilters | 1PASS | ||
0.06593407
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
0.06593407
|
jalview.analysis.AnnotationSorterTest.testSort_timingSemisortedjalview.analysis.AnnotationSorterTest.testSort_timingSemisorted | 1PASS | ||
0.06593407
|
jalview.datamodel.SequenceTest.testIsProteinjalview.datamodel.SequenceTest.testIsProtein | 1PASS | ||
0.06593407
|
jalview.gui.FeatureSettingsTest.testIdentifyFeatureSettingsFilejalview.gui.FeatureSettingsTest.testIdentifyFeatureSettingsFile | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseArgsTestjalview.bin.argparser.ArgParserTest.parseArgsTest | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscriptsjalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscripts | 1PASS | ||
0.06593407
|
jalview.datamodel.SequenceTest.testGetPrimaryDBRefs_peptidejalview.datamodel.SequenceTest.testGetPrimaryDBRefs_peptide | 1PASS | ||
0.06593407
|
jalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessagejalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessage | 1PASS | ||
0.06593407
|
jalview.analysis.AnnotationSorterTest.testSort_timingUnsortedjalview.analysis.AnnotationSorterTest.testSort_timingUnsorted | 1PASS | ||
0.06593407
|
jalview.datamodel.SequenceTest.testDeriveSequence_existingDatasetjalview.datamodel.SequenceTest.testDeriveSequence_existingDataset | 1PASS | ||
0.06593407
|
jalview.schemes.ColourSchemesTest.testGetColourSchemejalview.schemes.ColourSchemesTest.testGetColourScheme | 1PASS | ||
0.06593407
|
jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructurejalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure | 1PASS | ||
0.06593407
|
jalview.gui.StructureChooserTest.fetchStructuresInfoMockedTestjalview.gui.StructureChooserTest.fetchStructuresInfoMockedTest | 1PASS | ||
0.06593407
|
jalview.datamodel.HiddenColumnsTest.testHideColumnsjalview.datamodel.HiddenColumnsTest.testHideColumns | 1PASS | ||
0.06593407
|
jalview.io.StockholmFileTest.descriptionLineOutputjalview.io.StockholmFileTest.descriptionLineOutput | 1PASS | ||
0.06593407
|
jalview.analysis.DnaTest.testTranslateCdna_hiddenColumnsjalview.analysis.DnaTest.testTranslateCdna_hiddenColumns | 1PASS | ||
0.06593407
|
jalview.io.FileIOTester.testGziplocalFileIOjalview.io.FileIOTester.testGziplocalFileIO | 1PASS | ||
0.06593407
|
jalview.io.FeaturesFileTest.simpleGff3FileLoaderjalview.io.FeaturesFileTest.simpleGff3FileLoader | 1PASS | ||
0.06593407
|
jalview.analysis.CrossRefTest.testSearchDatasetjalview.analysis.CrossRefTest.testSearchDataset | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngappedjalview.analysis.AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngapped | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeqjalview.analysis.AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeq | 1PASS | ||
0.06593407
|
jalview.bin.HiDPISettingTest1.testHiDPISettingInitjalview.bin.HiDPISettingTest1.testHiDPISettingInit | 1PASS | ||
0.06593407
|
jalview.ext.jmol.JmolParserTest.testFileParserjalview.ext.jmol.JmolParserTest.testFileParser | 1PASS | ||
0.06593407
|
jalview.io.AnnotationFileIOTest.exampleAnnotationFileIOjalview.io.AnnotationFileIOTest.exampleAnnotationFileIO | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.schemes.ColourSchemePropertyTest.testGetColourNamejalview.schemes.ColourSchemePropertyTest.testGetColourName | 1PASS | ||
0.06593407
|
jalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_userdefjalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_userdef | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testCreateDatasetAlignmentWithMappedToSeqsjalview.datamodel.AlignmentTest.testCreateDatasetAlignmentWithMappedToSeqs | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.renderer.ScaleRendererTest.testCalculateMarksjalview.renderer.ScaleRendererTest.testCalculateMarks | 1PASS | ||
0.06593407
|
jalview.schemes.ResidueColourSchemeTest.testIsApplicableTo_dynamicColourSchemejalview.schemes.ResidueColourSchemeTest.testIsApplicableTo_dynamicColourScheme | 1PASS | ||
0.06593407
|
jalview.gui.AlignmentPanelTest.testSetOverviewTitlejalview.gui.AlignmentPanelTest.testSetOverviewTitle | 1PASS | ||
0.06593407
|
jalview.gui.AlignViewportTest.testGetSelectionAsNewSequences_withContactMatricesjalview.gui.AlignViewportTest.testGetSelectionAsNewSequences_withContactMatrices | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testAlignAs_dnaAsDnajalview.datamodel.AlignmentTest.testAlignAs_dnaAsDna | 1PASS | ||
0.06593407
|
jalview.viewmodel.ViewportRangesTest.testSetViewportLocationjalview.viewmodel.ViewportRangesTest.testSetViewportLocation | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProtein_singleSequencejalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProtein_singleSequence | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefsjalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefs | 1PASS | ||
0.06593407
|
jalview.analysis.DnaTest.testTranslateCdna_simplejalview.analysis.DnaTest.testTranslateCdna_simple | 1PASS | ||
0.06593407
|
jalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_zappojalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_zappo | 1PASS | ||
0.06593407
|
jalview.gui.AlignViewportTest.testDeregisterMapping_withNoReferencejalview.gui.AlignViewportTest.testDeregisterMapping_withNoReference | 1PASS | ||
0.06593407
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withGapjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withGap | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.io.FileIOTester.testStarsInFasta1jalview.io.FileIOTester.testStarsInFasta1 | 1PASS | ||
0.06593407
|
jalview.renderer.ResidueColourFinderTest.testGetResidueColour_zappojalview.renderer.ResidueColourFinderTest.testGetResidueColour_zappo | 1PASS | ||
0.06593407
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
0.06593407
|
jalview.commands.EditCommandTest.testLeftRight_Justify_and_preserves_gapsjalview.commands.EditCommandTest.testLeftRight_Justify_and_preserves_gaps | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
0.06593407
|
jalview.schemes.ResidueColourSchemeTest.testGetNamejalview.schemes.ResidueColourSchemeTest.testGetName | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.datamodel.SequenceTest.testFindPosition_withCursorAndEditsjalview.datamodel.SequenceTest.testFindPosition_withCursorAndEdits | 1PASS | ||
0.06593407
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
0.06593407
|
mc_view.PDBfileTest.testParse_withJmol_noAnnotationsmc_view.PDBfileTest.testParse_withJmol_noAnnotations | 1PASS | ||
0.06593407
|
jalview.datamodel.SeqCigarTest.testSomethingjalview.datamodel.SeqCigarTest.testSomething | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.checkArgsWithinTypesTestjalview.bin.argparser.ArgParserTest.checkArgsWithinTypesTest | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePositionjalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePosition | 1PASS | ||
0.06593407
|
jalview.analysis.CrossRefTest.testFindXrefSequences_indirectDbrefToProteinjalview.analysis.CrossRefTest.testFindXrefSequences_indirectDbrefToProtein | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseArgsTestjalview.bin.argparser.ArgParserTest.parseArgsTest | 1PASS | ||
0.06593407
|
jalview.io.AnnotationExporterTest.testAnnotationExportAsCSVjalview.io.AnnotationExporterTest.testAnnotationExportAsCSV | 1PASS | ||
0.06593407
|
jalview.io.PfamFormatInputTest.testPfamFormatNoLimitsjalview.io.PfamFormatInputTest.testPfamFormatNoLimits | 1PASS | ||
0.06593407
|
jalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodonsAndHiddenColumnsjalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodonsAndHiddenColumns | 1PASS | ||
0.06593407
|
jalview.viewmodel.ViewportRangesTest.testScrollToWrappedVisiblejalview.viewmodel.ViewportRangesTest.testScrollToWrappedVisible | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testPropagateInsertionsOverlapjalview.datamodel.AlignmentTest.testPropagateInsertionsOverlap | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testShowOrHideSequenceAnnotationsjalview.analysis.AlignmentUtilsTests.testShowOrHideSequenceAnnotations | 1PASS | ||
0.06593407
|
jalview.gui.AlignViewportTest.testDeregisterMapping_withReferencejalview.gui.AlignViewportTest.testDeregisterMapping_withReference | 1PASS | ||
0.06593407
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
0.06593407
|
jalview.io.StockholmFileTest.stockholmFileRnaSSSpaceCharsjalview.io.StockholmFileTest.stockholmFileRnaSSSpaceChars | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.analysis.AverageDistanceEngineTest.testUPGMAEnginejalview.analysis.AverageDistanceEngineTest.testUPGMAEngine | 1PASS | ||
0.06593407
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_columnsjalview.util.MappingUtilsTest.testMapSequenceGroup_columns | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentify_featureFilejalview.io.IdentifyFileTest.testIdentify_featureFile | 1PASS | ||
0.06593407
|
jalview.util.ComparisonTest.testIsNucleotide_sequencesjalview.util.ComparisonTest.testIsNucleotide_sequences | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.datamodel.SequenceTest.testLocateVisibleStartofSequencejalview.datamodel.SequenceTest.testLocateVisibleStartofSequence | 1PASS | ||
0.06593407
|
jalview.ws.sifts.SiftsClientTest.testSIFTsDownloadURLjalview.ws.sifts.SiftsClientTest.testSIFTsDownloadURL | 1PASS | ||
0.06593407
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testExpandContextjalview.analysis.AlignmentUtilsTests.testExpandContext | 1PASS | ||
0.06593407
|
jalview.gui.AlignFrameTest.testNewView_dsRefPreservedjalview.gui.AlignFrameTest.testNewView_dsRefPreserved | 1PASS | ||
0.06593407
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
0.06593407
|
jalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlightjalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlight | 1PASS | ||
0.06593407
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParamsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParams | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testMakeCdsAlignmentjalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.checkArgsWithinTypesTestjalview.bin.argparser.ArgParserTest.checkArgsWithinTypesTest | 1PASS | ||
0.06593407
|
jalview.viewmodel.ViewportRangesTest.testPageUpDownWrappedjalview.viewmodel.ViewportRangesTest.testPageUpDownWrapped | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_nonejalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_none | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_sequencesjalview.util.MappingUtilsTest.testMapSequenceGroup_sequences | 1PASS | ||
0.06593407
|
jalview.analysis.CrossRefTest.testFindXrefSequences_fromDbRefMapjalview.analysis.CrossRefTest.testFindXrefSequences_fromDbRefMap | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplayjalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplay | 1PASS | ||
0.06593407
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProteinjalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProtein | 1PASS | ||
0.06593407
|
jalview.ws.dbsources.EBIAlphaFoldTest.checkPAEimportjalview.ws.dbsources.EBIAlphaFoldTest.checkPAEimport | 1PASS | ||
0.06593407
|
jalview.viewmodel.OverviewDimensionsHideHiddenTest.testConstructorjalview.viewmodel.OverviewDimensionsHideHiddenTest.testConstructor | 1PASS | ||
0.06593407
|
jalview.gui.PaintRefresherTest.testGetAssociatedPanelsjalview.gui.PaintRefresherTest.testGetAssociatedPanels | 1PASS | ||
0.06593407
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
0.06593407
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsqjalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsq | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testGetWidthjalview.datamodel.AlignmentTest.testGetWidth | 1PASS | ||
0.06593407
|
jalview.util.MappingUtilsTest.testMapColumnSelection_proteinToDnajalview.util.MappingUtilsTest.testMapColumnSelection_proteinToDna | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testIsMappablejalview.analysis.AlignmentUtilsTests.testIsMappable | 1PASS | ||
0.06593407
|
jalview.io.StockholmFileTest.pfamFileIOjalview.io.StockholmFileTest.pfamFileIO | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testDeleteSequenceBySeqjalview.datamodel.AlignmentTest.testDeleteSequenceBySeq | 1PASS | ||
0.06593407
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_forAlignFramejalview.gui.ColourMenuHelperTest.testAddMenuItems_forAlignFrame | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testCreateDatasetAlignmentjalview.datamodel.AlignmentTest.testCreateDatasetAlignment | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentAnnotationTests.testLiftOverjalview.datamodel.AlignmentAnnotationTests.testLiftOver | 1PASS | ||
0.06593407
|
jalview.commands.EditCommandTest.testReplace_withGapsjalview.commands.EditCommandTest.testReplace_withGaps | 1PASS | ||
0.06593407
|
jalview.datamodel.CigarArrayTest.testConstructorjalview.datamodel.CigarArrayTest.testConstructor | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGaps | 1PASS | ||
0.06593407
|
mc_view.PDBfileTest.testParse_withAnnotations_noSSmc_view.PDBfileTest.testParse_withAnnotations_noSS | 1PASS | ||
0.06593407
|
jalview.datamodel.HiddenColumnsTest.testGetVisibleStartAndEndIndexjalview.datamodel.HiddenColumnsTest.testGetVisibleStartAndEndIndex | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.io.FileIOTester.testGzipIojalview.io.FileIOTester.testGzipIo | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testCopyConstructorjalview.datamodel.AlignmentTest.testCopyConstructor | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.datamodel.ColumnSelectionTest.testHideSelectedColumnsjalview.datamodel.ColumnSelectionTest.testHideSelectedColumns | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTestjalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTest | 1PASS | ||
0.06593407
|
jalview.ws.rest.RestClientTest.testGetRestClientjalview.ws.rest.RestClientTest.testGetRestClient | 1PASS | ||
0.06593407
|
jalview.util.ComparisonTest.testIsNucleotideSequencejalview.util.ComparisonTest.testIsNucleotideSequence | 1PASS | ||
0.06593407
|
jalview.datamodel.ColumnSelectionTest.testInvertColumnSelectionjalview.datamodel.ColumnSelectionTest.testInvertColumnSelection | 1PASS | ||
0.06593407
|
jalview.analysis.CrossRefTest.testFindXrefSourcesForSequence_proteinToDnajalview.analysis.CrossRefTest.testFindXrefSourcesForSequence_proteinToDna | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnlyjalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnly | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testFindOrCreateForNullCalcIdjalview.datamodel.AlignmentTest.testFindOrCreateForNullCalcId | 1PASS | ||
0.06593407
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeaturejalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeature | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment_filterProductsjalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment_filterProducts | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructurejalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testAddSequencePreserveDatasetIntegrityjalview.datamodel.AlignmentTest.testAddSequencePreserveDatasetIntegrity | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testDeleteHiddenSequencejalview.datamodel.AlignmentTest.testDeleteHiddenSequence | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructurejalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.viewmodel.ViewportRangesTest.testScrollUp_wrappedjalview.viewmodel.ViewportRangesTest.testScrollUp_wrapped | 1PASS | ||
0.06593407
|
jalview.analysis.SeqsetUtilsTest.testSeqFeatureAdditionjalview.analysis.SeqsetUtilsTest.testSeqFeatureAddition | 1PASS | ||
0.06593407
|
jalview.datamodel.SequenceTest.testGetPrimaryDBRefs_nucleotidejalview.datamodel.SequenceTest.testGetPrimaryDBRefs_nucleotide | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTestjalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTest | 1PASS | ||
0.06593407
|
jalview.io.StockholmFileTest.stockholmFileRnaSSAlphaCharsjalview.io.StockholmFileTest.stockholmFileRnaSSAlphaChars | 1PASS | ||
0.06593407
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumnsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumns | 1PASS | ||
0.06593407
|
jalview.io.JSONFileTest.testGrpParsed_colourNonejalview.io.JSONFileTest.testGrpParsed_colourNone | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testVerifyAlignmentDatasetRefsjalview.datamodel.AlignmentTest.testVerifyAlignmentDatasetRefs | 1PASS | ||
0.06593407
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
0.06593407
|
jalview.io.FileIOTester.testNonGzipURLIOjalview.io.FileIOTester.testNonGzipURLIO | 1PASS | ||
0.06593407
|
jalview.analysis.CrossRefTest.testFindXrefSequences_noDbrefsjalview.analysis.CrossRefTest.testFindXrefSequences_noDbrefs | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefsjalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefs | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testAppendjalview.datamodel.AlignmentTest.testAppend | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.schemes.ClustalxColourSchemeTest.testFindColourjalview.schemes.ClustalxColourSchemeTest.testFindColour | 1PASS | ||
0.06593407
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
0.06593407
|
jalview.io.PhylipFileTests.testSequentialDataExtractionjalview.io.PhylipFileTests.testSequentialDataExtraction | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testAlignAs_proteinAsCdnajalview.datamodel.AlignmentTest.testAlignAs_proteinAsCdna | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testDeleteSequenceByIndexjalview.datamodel.AlignmentTest.testDeleteSequenceByIndex | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTestjalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTest | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.io.FeaturesFileTest.testPrintJalviewFormatjalview.io.FeaturesFileTest.testPrintJalviewFormat | 1PASS | ||
0.06593407
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
0.06593407
|
jalview.ws.dbsources.EBIAlphaFoldTest.checkPAEimportjalview.ws.dbsources.EBIAlphaFoldTest.checkPAEimport | 1PASS | ||
0.06593407
|
jalview.commands.EditCommandTest.testCut_withFeatures5primejalview.commands.EditCommandTest.testCut_withFeatures5prime | 1PASS | ||
0.06593407
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.allLinkedIdsTestjalview.bin.argparser.ArgParserTest.allLinkedIdsTest | 1PASS | ||
0.06593407
|
jalview.datamodel.HiddenSequencesTest.testAdjustForHiddenSeqsjalview.datamodel.HiddenSequencesTest.testAdjustForHiddenSeqs | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseArgsTestjalview.bin.argparser.ArgParserTest.parseArgsTest | 1PASS | ||
0.06593407
|
jalview.util.MappingUtilsTest.testMapEditCommandjalview.util.MappingUtilsTest.testMapEditCommand | 1PASS | ||
0.06593407
|
jalview.gui.AlignViewportTest.testDeregisterMapping_onCloseViewjalview.gui.AlignViewportTest.testDeregisterMapping_onCloseView | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testAlignAsSameSequencesjalview.analysis.AlignmentUtilsTests.testAlignAsSameSequences | 1PASS | ||
0.06593407
|
jalview.viewmodel.OverviewDimensionsShowHiddenTest.testConstructorjalview.viewmodel.OverviewDimensionsShowHiddenTest.testConstructor | 1PASS | ||
0.06593407
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.buildPDBQueryTestjalview.gui.structurechooser.StructureChooserQuerySourceTest.buildPDBQueryTest | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.ext.jmol.JmolParserTest.testAlignmentLoaderjalview.ext.jmol.JmolParserTest.testAlignmentLoader | 1PASS | ||
0.06593407
|
jalview.datamodel.HiddenSequencesTest.testIsHiddenjalview.datamodel.HiddenSequencesTest.testIsHidden | 1PASS | ||
0.06593407
|
jalview.viewmodel.ViewportRangesTest.testGetWrappedMaxScrolljalview.viewmodel.ViewportRangesTest.testGetWrappedMaxScroll | 1PASS | ||
0.06593407
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentViewTest.testGetVisibleAlignmentGapCharjalview.datamodel.AlignmentViewTest.testGetVisibleAlignmentGapChar | 1PASS | ||
0.06593407
|
jalview.io.StockholmFileTest.rfamFileIOjalview.io.StockholmFileTest.rfamFileIO | 1PASS | ||
0.06593407
|
jalview.io.FileIOTester.testStarsInFasta2jalview.io.FileIOTester.testStarsInFasta2 | 1PASS | ||
0.06593407
|
jalview.structures.models.AAStructureBindingModelTest.testImportPDBPreservesChainMappingsjalview.structures.models.AAStructureBindingModelTest.testImportPDBPreservesChainMappings | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseArgsTestjalview.bin.argparser.ArgParserTest.parseArgsTest | 1PASS | ||
0.06593407
|
jalview.util.Log4jTest.testLog4jjalview.util.Log4jTest.testLog4j | 1PASS | ||
0.06593407
|
jalview.analysis.DnaTest.testReverseCdnajalview.analysis.DnaTest.testReverseCdna | 1PASS | ||
0.06593407
|
jalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodonsjalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodons | 1PASS | ||
0.06593407
|
jalview.bin.CacheTest.testVersionCheckerjalview.bin.CacheTest.testVersionChecker | 1PASS | ||
0.06593407
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumnjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumn | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testGetSequencesByNamejalview.analysis.AlignmentUtilsTests.testGetSequencesByName | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.gui.AlignViewportTest.testGetConsensusSeqjalview.gui.AlignViewportTest.testGetConsensusSeq | 1PASS | ||
0.06593407
|
jalview.gui.AlignViewportTest.testSetGetHasSearchResultsjalview.gui.AlignViewportTest.testSetGetHasSearchResults | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.gui.SeqPanelTest.testFindColumn_and_FindAlignmentColumn_wrappedjalview.gui.SeqPanelTest.testFindColumn_and_FindAlignmentColumn_wrapped | 1PASS | ||
0.06593407
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_peptidejalview.gui.ColourMenuHelperTest.testAddMenuItems_peptide | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.io.gff.ExonerateHelperTest.testProcessGffSimilarity_protein2dna_forward_targetgffjalview.io.gff.ExonerateHelperTest.testProcessGffSimilarity_protein2dna_forward_targetgff | 1PASS | ||
0.06593407
|
jalview.util.ImageMakerTest.testParseScaleWidthHeightStringsjalview.util.ImageMakerTest.testParseScaleWidthHeightStrings | 1PASS | ||
0.06593407
|
jalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequencejalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequence | 1PASS | ||
0.06593407
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_simpleOnlyjalview.gui.ColourMenuHelperTest.testAddMenuItems_simpleOnly | 1PASS | ||
0.06593407
|
mc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotationsmc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotations | 1PASS | ||
0.06593407
|
jalview.analysis.CrossRefTest.testFindXrefSequences_indirectDbrefToNucleotidejalview.analysis.CrossRefTest.testFindXrefSequences_indirectDbrefToNucleotide | 1PASS | ||
0.06593407
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
0.06593407
|
jalview.gui.AlignViewportTest.testSetSelectionGroupjalview.gui.AlignViewportTest.testSetSelectionGroup | 1PASS | ||
0.06593407
|
jalview.io.gff.ExonerateHelperTest.testProcessGffSimilarity_protein2dna_reverse_targetgffjalview.io.gff.ExonerateHelperTest.testProcessGffSimilarity_protein2dna_reverse_targetgff | 1PASS | ||
0.06593407
|
jalview.gui.AlignViewportTest.testUpdateConservation_qualityOnlyjalview.gui.AlignViewportTest.testUpdateConservation_qualityOnly | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTestjalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTest | 1PASS | ||
0.06593407
|
jalview.renderer.ResidueColourFinderTest.testGetResidueColour_nonejalview.renderer.ResidueColourFinderTest.testGetResidueColour_none | 1PASS | ||
0.06593407
|
jalview.viewmodel.ViewportRangesTest.testGetWrappedScrollPositionjalview.viewmodel.ViewportRangesTest.testGetWrappedScrollPosition | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testExpandContext_annotationjalview.analysis.AlignmentUtilsTests.testExpandContext_annotation | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testAddReferenceContactMapjalview.analysis.AlignmentUtilsTests.testAddReferenceContactMap | 1PASS | ||
0.06593407
|
jalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGaps | 1PASS | ||
0.06593407
|
jalview.schemes.ResidueColourSchemeTest.testIsApplicableTojalview.schemes.ResidueColourSchemeTest.testIsApplicableTo | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentViewTest.testGetVisibleContigsjalview.datamodel.AlignmentViewTest.testGetVisibleContigs | 1PASS | ||
0.06593407
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
0.06593407
|
jalview.io.FeaturesFileTest.testParse_pureGff3jalview.io.FeaturesFileTest.testParse_pureGff3 | 1PASS | ||
0.06593407
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_nucleotidejalview.gui.ColourMenuHelperTest.testAddMenuItems_nucleotide | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTestjalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTest | 1PASS | ||
0.06593407
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
0.06593407
|
jalview.renderer.ResidueColourFinderTest.testGetResidueColour_userdefjalview.renderer.ResidueColourFinderTest.testGetResidueColour_userdef | 1PASS | ||
0.06593407
|
jalview.util.MappingUtilsTest.testMapColumnSelection_dnaToProteinjalview.util.MappingUtilsTest.testMapColumnSelection_dnaToProtein | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testAlignProteinAsDnajalview.analysis.AlignmentUtilsTests.testAlignProteinAsDna | 1PASS | ||
0.06593407
|
jalview.io.FeaturesFileTest.testParsejalview.io.FeaturesFileTest.testParse | 1PASS | ||
0.06593407
|
jalview.gui.AlignViewportTest.testSetGlobalColourSchemejalview.gui.AlignViewportTest.testSetGlobalColourScheme | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testEqualsjalview.datamodel.AlignmentTest.testEquals | 1PASS | ||
0.06593407
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.allLinkedIdsTestjalview.bin.argparser.ArgParserTest.allLinkedIdsTest | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentSorterTest.testSortByFeature_scorejalview.analysis.AlignmentSorterTest.testSortByFeature_score | 1PASS | ||
0.06593407
|
jalview.io.PhylipFileTests.testSequentialIOjalview.io.PhylipFileTests.testSequentialIO | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testSetDataset_selfReferencejalview.datamodel.AlignmentTest.testSetDataset_selfReference | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testAssertDatasetIsNormalisedjalview.datamodel.AlignmentTest.testAssertDatasetIsNormalised | 1PASS | ||
0.06593407
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment_multipleProteinsjalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment_multipleProteins | 1PASS | ||
0.06593407
|
jalview.gui.ScalePanelTest.testSelectColumns_withHiddenjalview.gui.ScalePanelTest.testSelectColumns_withHidden | 1PASS | ||
0.06593407
|
jalview.schemes.ColourSchemePropertyTest.testGetColourSchemejalview.schemes.ColourSchemePropertyTest.testGetColourScheme | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testPropagateInsertionsjalview.datamodel.AlignmentTest.testPropagateInsertions | 1PASS | ||
0.06593407
|
jalview.io.FileIOTester.testNonGziplocalFileIOjalview.io.FileIOTester.testNonGziplocalFileIO | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testGetVisibleWidthjalview.datamodel.AlignmentTest.testGetVisibleWidth | 1PASS | ||
0.06593407
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances | 1PASS | ||
0.06593407
|
jalview.analysis.DnaTest.testTranslateCdna_sequenceOrderIndependentjalview.analysis.DnaTest.testTranslateCdna_sequenceOrderIndependent | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
0.06593407
|
jalview.io.TCoffeeScoreFileTest.testParsejalview.io.TCoffeeScoreFileTest.testParse | 1PASS | ||
0.06593407
|
jalview.util.MappingUtilsTest.testMapColumnSelection_hiddenColumnsjalview.util.MappingUtilsTest.testMapColumnSelection_hiddenColumns | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTestjalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTest | 1PASS | ||
0.06593407
|
jalview.gui.AlignViewportTest.testShowOrDontShowOccupancyjalview.gui.AlignViewportTest.testShowOrDontShowOccupancy | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testPadGapsjalview.datamodel.AlignmentTest.testPadGaps | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.io.StockholmFileTest.fullWUSSsecondaryStructureForRNASequencejalview.io.StockholmFileTest.fullWUSSsecondaryStructureForRNASequence | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_withSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_withSelectionGroup | 1PASS | ||
0.06593407
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroup | 1PASS | ||
0.06593407
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforViews | 1PASS | ||
0.06593407
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
0.06593407
|
jalview.io.StockholmFileTest.pfamFileDataExtractionjalview.io.StockholmFileTest.pfamFileDataExtraction | 1PASS | ||
0.06593407
|
jalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTestjalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTest | 1PASS | ||
0.06593407
|
jalview.datamodel.SequenceGroupTest.testContainsjalview.datamodel.SequenceGroupTest.testContains | 1PASS | ||
0.06593407
|
jalview.io.JalviewExportPropertiesTests.testImportExportPeriodGapsjalview.io.JalviewExportPropertiesTests.testImportExportPeriodGaps | 1PASS | ||
0.06593407
|
jalview.gui.AlignFrameTest.testNewView_colourThresholdsjalview.gui.AlignFrameTest.testNewView_colourThresholds | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testFindGroupjalview.datamodel.AlignmentTest.testFindGroup | 1PASS | ||
0.06593407
|
jalview.io.FeaturesFileTest.testPrintGffFormatjalview.io.FeaturesFileTest.testPrintGffFormat | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodonjalview.analysis.AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodon | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.io.StockholmFileTest.secondaryStructureForRNASequencejalview.io.StockholmFileTest.secondaryStructureForRNASequence | 1PASS | ||
0.06593407
|
jalview.io.IdentifyFileTest.testIdentifyjalview.io.IdentifyFileTest.testIdentify | 1PASS | ||
0.06593407
|
jalview.io.FeaturesFileTest.testPrintGffFormat_withFiltersjalview.io.FeaturesFileTest.testPrintGffFormat_withFilters | 1PASS | ||
0.06593407
|
jalview.datamodel.AlignmentTest.testCreateDataset_updateDbrefMappingsjalview.datamodel.AlignmentTest.testCreateDataset_updateDbrefMappings | 1PASS | ||
0.06593407
|
jalview.util.MappingUtilsTest.testMapColumnSelection_nulljalview.util.MappingUtilsTest.testMapColumnSelection_null | 1PASS | ||
0.06593407
|
jalview.analysis.AnnotationSorterTest.testSort_timingPresortedjalview.analysis.AnnotationSorterTest.testSort_timingPresorted | 1PASS | ||
0.06593407
|
jalview.io.AnnotationFileIOTest.testAnnotateAlignmentViewjalview.io.AnnotationFileIOTest.testAnnotateAlignmentView | 1PASS | ||
0.06593407
|
jalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodonsjalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodons | 1PASS | ||
0.06593407
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.buildThreeDBQueryTestjalview.gui.structurechooser.StructureChooserQuerySourceTest.buildThreeDBQueryTest | 1PASS |
1 | /* | ||||||
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | ||||||
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | ||||||
4 | * | ||||||
5 | * This file is part of Jalview. | ||||||
6 | * | ||||||
7 | * Jalview is free software: you can redistribute it and/or | ||||||
8 | * modify it under the terms of the GNU General Public License | ||||||
9 | * as published by the Free Software Foundation, either version 3 | ||||||
10 | * of the License, or (at your option) any later version. | ||||||
11 | * | ||||||
12 | * Jalview is distributed in the hope that it will be useful, but | ||||||
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | ||||||
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | ||||||
15 | * PURPOSE. See the GNU General Public License for more details. | ||||||
16 | * | ||||||
17 | * You should have received a copy of the GNU General Public License | ||||||
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | ||||||
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | ||||||
20 | */ | ||||||
21 | package jalview.log; | ||||||
22 | |||||||
23 | import java.util.EnumSet; | ||||||
24 | import java.util.HashMap; | ||||||
25 | import java.util.Map; | ||||||
26 | |||||||
27 | import jalview.bin.Console; | ||||||
28 | import jalview.util.Platform; | ||||||
29 | |||||||
|
|||||||
30 | public abstract class JLogger implements JLoggerI | ||||||
31 | { | ||||||
32 | protected String name; | ||||||
33 | |||||||
34 | protected LogLevel level; | ||||||
35 | |||||||
36 | private Object logger = null; | ||||||
37 | |||||||
38 | private static Map<String, JLogger> registry = new HashMap<>(); | ||||||
39 | |||||||
40 | // implement these abstract methods | ||||||
41 | protected abstract void loggerSetup(); | ||||||
42 | |||||||
43 | public abstract boolean loggerExists(); | ||||||
44 | |||||||
45 | protected abstract void loggerSetLevel(LogLevel level); | ||||||
46 | |||||||
47 | protected abstract void loggerLogMessage(LogLevel level, String message, | ||||||
48 | Throwable t); | ||||||
49 | |||||||
|
|||||||
50 | 6 | public static boolean isLevel(String levelString)... | |||||
51 | { | ||||||
52 | 6 | for (LogLevel l : EnumSet.allOf(LogLevel.class)) | |||||
53 | { | ||||||
54 | 19 | if (l.name().equals(levelString)) | |||||
55 | 6 | return true; | |||||
56 | } | ||||||
57 | 0 | return false; | |||||
58 | } | ||||||
59 | |||||||
|
|||||||
60 | 55 | public static LogLevel toLevel(String levelString)... | |||||
61 | { | ||||||
62 | 55 | try | |||||
63 | { | ||||||
64 | 55 | return LogLevel.valueOf(levelString); | |||||
65 | } catch (IllegalArgumentException e) | ||||||
66 | { | ||||||
67 | 0 | Console.error("Could not parse LogLevel '" + levelString + "'", e); | |||||
68 | 0 | return LogLevel.INFO; | |||||
69 | } | ||||||
70 | } | ||||||
71 | |||||||
|
|||||||
72 | 0 | public static JLogger getLogger(Class c)... | |||||
73 | { | ||||||
74 | 0 | return getLogger(c, LogLevel.INFO); | |||||
75 | } | ||||||
76 | |||||||
|
|||||||
77 | 0 | public static JLogger getLogger(Class c, LogLevel loglevel)... | |||||
78 | { | ||||||
79 | 0 | return getLogger(c.getCanonicalName(), loglevel); | |||||
80 | } | ||||||
81 | |||||||
|
|||||||
82 | 0 | public static JLogger getLogger(String name)... | |||||
83 | { | ||||||
84 | 0 | return getLogger(name, LogLevel.INFO); | |||||
85 | } | ||||||
86 | |||||||
|
|||||||
87 | 0 | public static JLogger getLogger(String name, LogLevel loglevel)... | |||||
88 | { | ||||||
89 | 0 | return registry.containsKey(name) ? (JLogger) registry.get(name) : null; | |||||
90 | } | ||||||
91 | |||||||
|
|||||||
92 | 110 | protected JLogger()... | |||||
93 | { | ||||||
94 | } | ||||||
95 | |||||||
|
|||||||
96 | 0 | protected JLogger(String name, LogLevel level)... | |||||
97 | { | ||||||
98 | 0 | this.name = name; | |||||
99 | 0 | this.level = level; | |||||
100 | 0 | this.loggerSetup(); | |||||
101 | 0 | this.registryStore(); | |||||
102 | } | ||||||
103 | |||||||
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|||||||
104 | 110 | protected void registryStore()... | |||||
105 | { | ||||||
106 | 110 | registry.put(this.name, this); | |||||
107 | } | ||||||
108 | |||||||
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|||||||
109 | 110 | protected static boolean registryContainsKey(String name)... | |||||
110 | { | ||||||
111 | 110 | return registry.containsKey(name); | |||||
112 | } | ||||||
113 | |||||||
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|||||||
114 | 0 | protected static JLogger registryGet(String name)... | |||||
115 | { | ||||||
116 | 0 | return registry.get(name); | |||||
117 | } | ||||||
118 | |||||||
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|||||||
119 | 75 | @Override... | |||||
120 | public LogLevel getLevel() | ||||||
121 | { | ||||||
122 | 75 | return this.level; | |||||
123 | } | ||||||
124 | |||||||
|
|||||||
125 | 75 | @Override... | |||||
126 | public void setLevel(LogLevel level) | ||||||
127 | { | ||||||
128 | 75 | this.level = level; | |||||
129 | 75 | if (loggerExists()) | |||||
130 | 75 | loggerSetLevel(level); | |||||
131 | } | ||||||
132 | |||||||
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|||||||
133 | 18710 | private boolean println(LogLevel loglevel, String message, Throwable t)... | |||||
134 | { | ||||||
135 | 18711 | if (loglevel.compareTo(this.level) < 0) | |||||
136 | { | ||||||
137 | 17004 | return false; | |||||
138 | } | ||||||
139 | 1707 | if (!loggerExists() || Platform.isJS()) | |||||
140 | { | ||||||
141 | 0 | String logLine = String.format("%s: %s", loglevel.toString(), | |||||
142 | message); | ||||||
143 | 0 | jalview.bin.Console.outPrintln(logLine); | |||||
144 | 0 | if (t != null) | |||||
145 | { | ||||||
146 | 0 | if (loglevel.compareTo(LogLevel.DEBUG) <= 0) | |||||
147 | 0 | t.printStackTrace(System.err); | |||||
148 | else | ||||||
149 | 0 | jalview.bin.Console.errPrintln(t.getMessage()); | |||||
150 | } | ||||||
151 | 0 | return false; | |||||
152 | } | ||||||
153 | else | ||||||
154 | { | ||||||
155 | 1707 | loggerLogMessage(loglevel, message, t); | |||||
156 | 1707 | return true; | |||||
157 | } | ||||||
158 | } | ||||||
159 | |||||||
|
|||||||
160 | 0 | @Override... | |||||
161 | public void trace(String message) | ||||||
162 | { | ||||||
163 | 0 | trace(message, null); | |||||
164 | } | ||||||
165 | |||||||
|
|||||||
166 | 2472 | @Override... | |||||
167 | public void trace(String message, Throwable t) | ||||||
168 | { | ||||||
169 | 2472 | println(LogLevel.TRACE, message, t); | |||||
170 | } | ||||||
171 | |||||||
|
|||||||
172 | 55 | @Override... | |||||
173 | public void debug(String message) | ||||||
174 | { | ||||||
175 | 55 | debug(message, null); | |||||
176 | } | ||||||
177 | |||||||
|
|||||||
178 | 14652 | @Override... | |||||
179 | public void debug(String message, Throwable t) | ||||||
180 | { | ||||||
181 | 14652 | println(LogLevel.DEBUG, message, t); | |||||
182 | } | ||||||
183 | |||||||
|
|||||||
184 | 0 | @Override... | |||||
185 | public void info(String message) | ||||||
186 | { | ||||||
187 | 0 | info(message, null); | |||||
188 | } | ||||||
189 | |||||||
|
|||||||
190 | 1449 | @Override... | |||||
191 | public void info(String message, Throwable t) | ||||||
192 | { | ||||||
193 | 1449 | println(LogLevel.INFO, message, t); | |||||
194 | } | ||||||
195 | |||||||
|
|||||||
196 | 0 | @Override... | |||||
197 | public void warn(String message) | ||||||
198 | { | ||||||
199 | 0 | warn(message, null); | |||||
200 | } | ||||||
201 | |||||||
|
|||||||
202 | 108 | @Override... | |||||
203 | public void warn(String message, Throwable t) | ||||||
204 | { | ||||||
205 | 108 | println(LogLevel.WARN, message, t); | |||||
206 | } | ||||||
207 | |||||||
|
|||||||
208 | 0 | @Override... | |||||
209 | public void error(String message) | ||||||
210 | { | ||||||
211 | 0 | error(message, null); | |||||
212 | } | ||||||
213 | |||||||
|
|||||||
214 | 29 | @Override... | |||||
215 | public void error(String message, Throwable t) | ||||||
216 | { | ||||||
217 | 29 | println(LogLevel.ERROR, message, t); | |||||
218 | } | ||||||
219 | |||||||
|
|||||||
220 | 0 | @Override... | |||||
221 | public void fatal(String message) | ||||||
222 | { | ||||||
223 | 0 | fatal(message, null); | |||||
224 | } | ||||||
225 | |||||||
|
|||||||
226 | 0 | @Override... | |||||
227 | public void fatal(String message, Throwable t) | ||||||
228 | { | ||||||
229 | 0 | println(LogLevel.FATAL, message, t); | |||||
230 | } | ||||||
231 | |||||||
|
|||||||
232 | 195 | @Override... | |||||
233 | public boolean isDebugEnabled() | ||||||
234 | { | ||||||
235 | 195 | return level.compareTo(LogLevel.DEBUG) <= 0; | |||||
236 | } | ||||||
237 | |||||||
|
|||||||
238 | 47 | @Override... | |||||
239 | public boolean isTraceEnabled() | ||||||
240 | { | ||||||
241 | 47 | return level.compareTo(LogLevel.TRACE) <= 0; | |||||
242 | } | ||||||
243 | } |