Test testJalviewProjectRelocationAnnotation

Test	Status	Start time	Time (seconds)	Message
testJalviewProjectRelocationAnnotation	1PASS	28 Nov 18:08:53	0.865

Target Class	Coverage contributed by testJalviewProjectRelocationAnnotation
com.stevesoft.pat.patInf   com.stevesoft.pat.patInf	1.0100%
jalview.io.DataSourceType   jalview.io.DataSourceType	1.0100%
jalview.xml.binding.jalview.AnnotationElement   jalview.xml.binding.jalview.AnnotationElement	1.0100%
jalview.xml.binding.jalview.SequenceType   jalview.xml.binding.jalview.SequenceType	1.0100%
jalview.xml.binding.jalview.JalviewModel.FeatureSettings   jalview.xml.binding.jalview.JalviewModel.FeatureSettings	1.0100%
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group   jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group	1.0100%
jalview.xml.binding.jalview.Pdbentry   jalview.xml.binding.jalview.Pdbentry	1.0100%
jalview.xml.binding.jalview.Pdbentry.Property   jalview.xml.binding.jalview.Pdbentry.Property	1.0100%
jalview.ws.WSClient   jalview.ws.WSClient	1.0100%
jalview.project.Jalview2XML.JvAnnotRow   jalview.project.Jalview2XML.JvAnnotRow	1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts	1.0100%
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel	0.9494%
jalview.io.BackupFilenameFilter   jalview.io.BackupFilenameFilter	0.928571492.9%
jalview.xml.binding.jalview.Feature   jalview.xml.binding.jalview.Feature	0.911764791.2%
jalview.xml.binding.jalview.SequenceSet   jalview.xml.binding.jalview.SequenceSet	0.894736889.5%
jalview.analysis.Conservation   jalview.analysis.Conservation	0.874384287.4%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle	0.8476562584.8%
com.stevesoft.pat.Rthings   com.stevesoft.pat.Rthings	0.8461538684.6%
mc_view.Residue   mc_view.Residue	0.8461538684.6%
jalview.xml.binding.jalview.JalviewModel.Viewport   jalview.xml.binding.jalview.JalviewModel.Viewport	0.844202984.4%
jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids   jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids	0.833333383.3%
jalview.xml.binding.jalview.JalviewModel   jalview.xml.binding.jalview.JalviewModel	0.807692380.8%
jalview.xml.binding.jalview.Annotation   jalview.xml.binding.jalview.Annotation	0.790909179.1%
jalview.util.LinkedIdentityHashSet   jalview.util.LinkedIdentityHashSet	0.7727272577.3%
jalview.xml.binding.jalview.JalviewModel.JSeq   jalview.xml.binding.jalview.JalviewModel.JSeq	0.770833377.1%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport	0.7575%
jalview.xml.binding.jalview.Sequence.DBRef   jalview.xml.binding.jalview.Sequence.DBRef	0.7575%
jalview.io.BackupFilesPresetEntry   jalview.io.BackupFilesPresetEntry	0.735294173.5%
jalview.datamodel.Profiles   jalview.datamodel.Profiles	0.7333333573.3%
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer	0.7142857371.4%
jalview.xml.binding.jalview.Sequence   jalview.xml.binding.jalview.Sequence	0.7142857371.4%
jalview.util.LinkedIdentityHashSet.IdentityWrapper   jalview.util.LinkedIdentityHashSet.IdentityWrapper	0.7142857371.4%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread	0.696969769.7%
jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher	0.678571467.9%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame	0.581220758.1%
jalview.schemes.FeatureSettingsAdapter   jalview.schemes.FeatureSettingsAdapter	0.571428657.1%
jalview.workers.ConservationThread   jalview.workers.ConservationThread	0.568965556.9%
com.stevesoft.pat.StrPos   com.stevesoft.pat.StrPos	0.523255852.3%
com.stevesoft.pat.OrMark   com.stevesoft.pat.OrMark	0.550%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties	0.550%
jalview.xml.binding.jalview.VAMSAS   jalview.xml.binding.jalview.VAMSAS	0.550%
mc_view.Bond   mc_view.Bond	0.550%
com.stevesoft.pat.wrap.StringWrap   com.stevesoft.pat.wrap.StringWrap	0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme	0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme	0.550%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme	0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme	0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme	0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme	0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme	0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme	0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme	0.550%
jalview.ext.jmol.JmolParser   jalview.ext.jmol.JmolParser	0.49649.6%
com.stevesoft.pat.oneChar   com.stevesoft.pat.oneChar	0.485714348.6%
jalview.structure.StructureImportSettings   jalview.structure.StructureImportSettings	0.485714348.6%
jalview.util.MessageManager   jalview.util.MessageManager	0.4761904847.6%
jalview.io.FileLoader   jalview.io.FileLoader	0.471571947.2%
jalview.gui.SplashScreen.SplashImage   jalview.gui.SplashScreen.SplashImage	0.4705882447.1%
jalview.datamodel.PDBEntry   jalview.datamodel.PDBEntry	0.4625550846.3%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient	0.4429530244.3%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager	0.4404761844%
jalview.gui.AlignViewport   jalview.gui.AlignViewport	0.4383561643.8%
jalview.io.StructureFile   jalview.io.StructureFile	0.4325581543.3%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper	0.4322033843.2%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition	0.4285714342.9%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11	0.4166666641.7%
jalview.io.FileFormats   jalview.io.FileFormats	0.440%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource	0.440%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme	0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme	0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme	0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme	0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme	0.440%
jalview.datamodel.Profile   jalview.datamodel.Profile	0.37537.5%
jalview.io.BackupFilenameParts   jalview.io.BackupFilenameParts	0.3648648636.5%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer	0.3623762436.2%
jalview.project.Jalview2XML   jalview.project.Jalview2XML	0.3612108836.1%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme	0.3571428735.7%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount	0.3563636235.6%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport	0.344461334.4%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel	0.3333333433.3%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures	0.3248407532.5%
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting   jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting	0.3225806432.3%
jalview.io.AlignFile   jalview.io.AlignFile	0.321917832.2%
mc_view.PDBChain   mc_view.PDBChain	0.3214285732.1%
jalview.util.Format   jalview.util.Format	0.3209109632.1%
jalview.util.Comparison   jalview.util.Comparison	0.3188976331.9%
jalview.io.IdentifyFile   jalview.io.IdentifyFile	0.3174603331.7%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation	0.31531.5%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription	0.31531.5%
jalview.datamodel.PDBEntry.Type   jalview.datamodel.PDBEntry.Type	0.312531.2%
com.stevesoft.pat.Pattern   com.stevesoft.pat.Pattern	0.3055555530.6%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges	0.2937293629.4%
jalview.io.BackupFiles   jalview.io.BackupFiles	0.29229.2%
jalview.ws.jws2.SequenceAnnotationWSClient   jalview.ws.jws2.SequenceAnnotationWSClient	0.2903225729%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource	0.285714328.6%
jalview.datamodel.Annotation   jalview.datamodel.Annotation	0.285714328.6%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme	0.285714328.6%
jalview.datamodel.annotations.AnnotationRowBuilder   jalview.datamodel.annotations.AnnotationRowBuilder	0.282051328.2%
mc_view.Atom   mc_view.Atom	0.282051328.2%
jalview.viewmodel.seqfeatures.FeaturesDisplayed   jalview.viewmodel.seqfeatures.FeaturesDisplayed	0.2812528.1%
jalview.datamodel.Sequence   jalview.datamodel.Sequence	0.276816627.7%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset	0.2727272827.3%
com.stevesoft.pat.Or   com.stevesoft.pat.Or	0.2692307826.9%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils	0.258503425.9%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore	0.2567975825.7%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher	0.253521125.4%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance	0.2528735725.3%
com.stevesoft.pat.Regex   com.stevesoft.pat.Regex	0.250909125.1%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature	0.2482014424.8%
jalview.viewmodel.seqfeatures.FeatureRendererModel   jalview.viewmodel.seqfeatures.FeatureRendererModel	0.245696424.6%
jalview.ws.uimodel.AlignAnalysisUIText   jalview.ws.uimodel.AlignAnalysisUIText	0.2439024424.4%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment	0.2435897424.4%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor	0.2333333323.3%
com.stevesoft.pat.Range   com.stevesoft.pat.Range	0.2272727322.7%
com.stevesoft.pat.Bracket   com.stevesoft.pat.Bracket	0.22522.5%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client	0.2228915722.3%
jalview.io.PDBFeatureSettings   jalview.io.PDBFeatureSettings	0.2142857221.4%
jalview.util.QuickSort   jalview.util.QuickSort	0.2135922321.4%
jalview.datamodel.DBRefEntry   jalview.datamodel.DBRefEntry	0.2123287621.2%
jalview.ws.rest.InputType   jalview.ws.rest.InputType	0.2056074720.6%
jalview.io.FileParse   jalview.io.FileParse	0.2033426220.3%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency	0.2025316520.3%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter	0.1970443319.7%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty	0.1944444519.4%
jalview.datamodel.Alignment   jalview.datamodel.Alignment	0.1927374319.3%
com.stevesoft.pat.patInt   com.stevesoft.pat.patInt	0.17517.5%
jalview.util.CaseInsensitiveString   jalview.util.CaseInsensitiveString	0.1739130517.4%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme	0.1739130517.4%
jalview.ws.jws1.WS1Client   jalview.ws.jws1.WS1Client	0.1616%
jalview.gui.Desktop.MyDesktopManager   jalview.gui.Desktop.MyDesktopManager	0.1555555615.6%
jalview.viewmodel.seqfeatures.FeatureRendererSettings   jalview.viewmodel.seqfeatures.FeatureRendererSettings	0.1555555615.6%
jalview.bin.Console   jalview.bin.Console	0.1527093615.3%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader	0.1515%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme	0.1475409914.8%
jalview.gui.AlignFrame   jalview.gui.AlignFrame	0.1451092814.5%
jalview.gui.Desktop.MyDesktopPane   jalview.gui.Desktop.MyDesktopPane	0.1428571514.3%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter	0.12422360512.4%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector	0.12408759412.4%
jalview.io.FormatAdapter   jalview.io.FormatAdapter	0.1212%
jalview.util.ColorUtils   jalview.util.ColorUtils	0.1182795711.8%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme	0.1176470611.8%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels	0.11538461611.5%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient	0.11538461611.5%
jalview.util.ShortcutKeyMaskExWrapper   jalview.util.ShortcutKeyMaskExWrapper	0.1111111111.1%
jalview.gui.Desktop   jalview.gui.Desktop	0.104783610.5%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile	0.10256410410.3%
com.stevesoft.pat.parsePerl   com.stevesoft.pat.parsePerl	0.098639469.9%
jalview.util.StringUtils   jalview.util.StringUtils	0.098461549.8%
jalview.gui.SplashScreen   jalview.gui.SplashScreen	0.0974025959.7%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker	0.09523819.5%
jalview.schemes.FeatureColour   jalview.schemes.FeatureColour	0.0947368449.5%
jalview.util.DBRefUtils   jalview.util.DBRefUtils	0.0936555869.4%
jalview.io.FileFormat   jalview.io.FileFormat	0.0930232559.3%
jalview.log.JLogger   jalview.log.JLogger	0.087912098.8%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam	0.086956528.7%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher	0.0833333368.3%
jalview.gui.Console   jalview.gui.Console	0.082568818.3%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour	0.082191788.2%
jalview.gui.ProgressBar   jalview.gui.ProgressBar	0.081300818.1%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager	0.0786666657.9%
com.stevesoft.pat.FastMulti   com.stevesoft.pat.FastMulti	0.0740740757.4%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes	0.070175447%
jalview.gui.IdPanel   jalview.gui.IdPanel	0.067264576.7%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme	0.066666676.7%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster	0.0657894766.6%
com.stevesoft.pat.RegOpt   com.stevesoft.pat.RegOpt	0.06474826.5%
jalview.analysis.CrossRef   jalview.analysis.CrossRef	0.063524596.4%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix	0.0617283966.2%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle	0.061224496.1%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel	0.060924376.1%
jalview.gui.IdCanvas   jalview.gui.IdCanvas	0.059649126%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu	0.059405945.9%
jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher	0.0577777775.8%
jalview.util.Platform   jalview.util.Platform	0.0566037745.7%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl	0.0540540555.4%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer	0.0512820525.1%
jalview.bin.Cache   jalview.bin.Cache	0.0509641885.1%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes	0.0496894425%
jalview.xml.binding.jalview.ObjectFactory   jalview.xml.binding.jalview.ObjectFactory	0.0427350444.3%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb	0.042553194.3%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore	0.0416666684.2%
jalview.gui.StructureViewerBase   jalview.gui.StructureViewerBase	0.0382916073.8%
jalview.gui.AppJmolBinding   jalview.gui.AppJmolBinding	0.0373831763.7%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList	0.0373831763.7%
jalview.gui.ScalePanel   jalview.gui.ScalePanel	0.035156253.5%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient	0.0310559013.1%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas	0.0290581162.9%
com.stevesoft.pat.RegRes   com.stevesoft.pat.RegRes	0.0289855082.9%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences	0.027397262.7%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder	0.0238095242.4%
jalview.ws.jws2.JabaWsServerQuery   jalview.ws.jws2.JabaWsServerQuery	0.0208333342.1%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns	0.0188679251.9%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme	0.0169491531.7%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor	0.0156251.6%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot	0.0155642021.6%
mc_view.PDBfile   mc_view.PDBfile	0.0150375941.5%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer	0.0144230771.4%
jalview.controller.AlignViewController   jalview.controller.AlignViewController	0.0136518771.4%
jalview.datamodel.SearchResults   jalview.datamodel.SearchResults	0.0128205131.3%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq	0.0128205131.3%
jalview.gui.SeqPanel   jalview.gui.SeqPanel	0.0125412541.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport	0.0122699381.2%
jalview.bin.Jalview   jalview.bin.Jalview	0.0118829981.2%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer	0.0117753621.2%
jalview.util.HttpUtils   jalview.util.HttpUtils	0.01169590651.2%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels	0.01150747951.2%
jalview.gui.BlogReader   jalview.gui.BlogReader	0.0110497241.1%
jalview.structures.models.AAStructureBindingModel   jalview.structures.models.AAStructureBindingModel	0.0104772991%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher	0.0089285720.9%
jalview.bin.argparser.BootstrapArgs   jalview.bin.argparser.BootstrapArgs	0.0082644620.8%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene	0.0081632650.8%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils	0.0080409360.8%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer	0.007547170.8%
jalview.gui.QuitHandler   jalview.gui.QuitHandler	0.00722021660.7%
jalview.ext.jmol.JalviewJmolBinding   jalview.ext.jmol.JalviewJmolBinding	0.0040485830.4%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection	0.00343642620.3%
com.stevesoft.pat.CaseMgr   com.stevesoft.pat.CaseMgr	0.00278551530.3%
jalview.schemes.ResidueProperties   jalview.schemes.ResidueProperties	0.00105042020.1%