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com.stevesoft.pat.patInf
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1.0100%
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jalview.gui.StructureViewer.ViewerType
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com.stevesoft.pat.Rthings
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mc_view.Residue
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mc_view.PDBChain
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mc_view.Bond
mc_view.Bond
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jalview.schemes.PurinePyrimidineColourScheme
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jalview.datamodel.ResidueCount
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jalview.gui.AppJmol
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jalview.io.StructureFile
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jalview.ws.jws2.MsaWSClient
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jalview.bin.argparser.SubVals
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jalview.bin.Commands
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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jalview.gui.ImageExporter
jalview.gui.ImageExporter
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jalview.util.ShortcutKeyMaskExWrapper11
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jalview.ext.so.SequenceOntology
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jalview.datamodel.Profile
jalview.datamodel.Profile
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jalview.schemes.ResidueColourScheme
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jalview.ws.dbsources.EmblSource
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jalview.schemes.HydrophobicColourScheme
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jalview.schemes.HelixColourScheme
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jalview.schemes.TurnColourScheme
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jalview.schemes.StrandColourScheme
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jalview.schemes.BuriedColourScheme
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jalview.structure.StructureImportSettings
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jalview.util.Comparison
jalview.util.Comparison
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jalview.util.Format
jalview.util.Format
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jalview.bin.Cache
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jalview.io.FastaFile
jalview.io.FastaFile
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jalview.datamodel.AlignmentAnnotation
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jalview.gui.AppJmolBinding
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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jalview.renderer.seqfeatures.FeatureColourFinder
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jalview.datamodel.Sequence
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mc_view.Atom
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jalview.io.IdentifyFile
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jalview.ws.jws2.JabaPreset
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jalview.util.QuickSort
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jalview.gui.JalviewChangeSupport
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0.2525%
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0.2525%
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jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
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jalview.structure.StructureMapping
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jalview.util.ErrorLog
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jalview.bin.BuildDetails
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.structure.StructureCommandsBase
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
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jalview.log.JLogger
jalview.log.JLogger
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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jalview.bin.Console
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jalview.util.FileUtils
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jalview.util.ImageMaker.TYPE
jalview.util.ImageMaker.TYPE
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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jalview.schemes.Blosum62ColourScheme
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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jalview.datamodel.Alignment
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jalview.gui.PaintRefresher
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jalview.bin.Jalview
jalview.bin.Jalview
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jalview.gui.StructureViewer
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jalview.util.StringUtils
jalview.util.StringUtils
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jalview.schemes.PIDColourScheme
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jalview.util.ColorUtils
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jalview.viewmodel.ViewportRanges
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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jalview.ws.rest.params.SeqGroupIndexVector
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jalview.util.Platform
jalview.util.Platform
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jalview.ext.jmol.JmolCommands
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.structure.StructureCommand
jalview.structure.StructureCommand
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jalview.ws.rest.RestClient
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jalview.renderer.ResidueShader
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jalview.util.ShortcutKeyMaskExWrapper
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1111111111.1%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.1095890411%
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jalview.io.FileFormat
jalview.io.FileFormat
|
0.1085271310.9%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.1028806610.3%
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jalview.util.MapList
jalview.util.MapList
|
0.1028037410.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
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jalview.bin.argparser.Arg
jalview.bin.argparser.Arg
|
0.099397599.9%
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.098639469.9%
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jalview.gui.StructureChooser
jalview.gui.StructureChooser
|
0.0955120859.6%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.09523819.5%
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.09523819.5%
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jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
|
0.093759.4%
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|
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.089743599%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.085106388.5%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.081081088.1%
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jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
|
0.077894747.8%
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jalview.util.ChannelProperties
jalview.util.ChannelProperties
|
0.075862077.6%
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com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.0757.5%
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.0740740757.4%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.070175447%
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jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
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jalview.util.LaunchUtils
jalview.util.LaunchUtils
|
0.0661764746.6%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.0657894766.6%
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jalview.fts.service.pdb.PDBFTSRestClient
jalview.fts.service.pdb.PDBFTSRestClient
|
0.065502186.6%
|
|
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.063524596.4%
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jalview.gui.Desktop
jalview.gui.Desktop
|
0.0626423666.3%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.0616438356.2%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
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jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
|
0.0576923085.8%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0512820525.1%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.047619054.8%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.045317224.5%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.044117654.4%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0402046784%
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jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
|
0.0390879473.9%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0373831763.7%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0288461542.9%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0254237282.5%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0245614032.5%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0235849062.4%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.02343752.3%
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jalview.gui.Console
jalview.gui.Console
|
0.0206422022.1%
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jalview.gui.structurechooser.PDBStructureChooserQuerySource
jalview.gui.structurechooser.PDBStructureChooserQuerySource
|
0.017751481.8%
|
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0155642021.6%
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mc_view.PDBfile
mc_view.PDBfile
|
0.0150375941.5%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0136518771.4%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0125412541.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0122699381.2%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.01150747951.2%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.010020041%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
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jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.0072463770.7%
|
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.00362318850.4%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.00343642620.3%
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com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
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jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00105042020.1%
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