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Test testGetSelectionAsNewSequences_withContactMatrices

Test
testGetSelectionAsNewSequences_withContactMatrices 1PASS 28 Nov 18:08:32 0.011
 
testGetSelectionAsNewSequences_withContactMatrices
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel 0.9494%
jalview.util.LinkedIdentityHashSet   jalview.util.LinkedIdentityHashSet 0.7727272577.3%
jalview.datamodel.Profiles   jalview.datamodel.Profiles 0.7333333573.3%
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer 0.7142857371.4%
jalview.util.LinkedIdentityHashSet.IdentityWrapper   jalview.util.LinkedIdentityHashSet.IdentityWrapper 0.7142857371.4%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread 0.696969769.7%
jalview.datamodel.ContactMapHolder   jalview.datamodel.ContactMapHolder 0.673076967.3%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame 0.581220758.1%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties 0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme 0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme 0.550%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme 0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme 0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme 0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme 0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme 0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme 0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme 0.550%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper 0.4322033843.2%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 0.4285714342.9%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11 0.4166666641.7%
jalview.datamodel.RangeIterator   jalview.datamodel.RangeIterator 0.405405440.5%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme 0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme 0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme 0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme 0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme 0.440%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager 0.380952438.1%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.37537.5%
jalview.datamodel.SeqDistanceContactMatrix   jalview.datamodel.SeqDistanceContactMatrix 0.37537.5%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme 0.3571428735.7%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.3428571534.3%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.3287197432.9%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher 0.3239436732.4%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.30530.5%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle 0.2929687529.3%
jalview.util.Comparison   jalview.util.Comparison 0.291338629.1%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme 0.285714328.6%
jalview.gui.AlignViewport   jalview.gui.AlignViewport 0.2671232826.7%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport 0.2525%
jalview.util.MessageManager   jalview.util.MessageManager 0.2380952423.8%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel 0.2261484122.6%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount 0.2145454621.5%
jalview.ws.datamodel.alphafold.MappableContactMatrix   jalview.ws.datamodel.alphafold.MappableContactMatrix 0.2092050220.9%
jalview.datamodel.SequenceGroup   jalview.datamodel.SequenceGroup 0.2027231520.3%
jalview.io.FileFormats   jalview.io.FileFormats 0.220%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter 0.1970443319.7%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.1940928319.4%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport 0.1927162419.3%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme 0.1739130517.4%
jalview.util.MapList   jalview.util.MapList 0.1651090416.5%
jalview.ws.jws1.WS1Client   jalview.ws.jws1.WS1Client 0.1616%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme 0.1475409914.8%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList 0.1401869214%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges 0.1287128812.9%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader 0.1285714412.9%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.1219739312.2%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme 0.1176470611.8%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.1156462611.6%
jalview.util.ShortcutKeyMaskExWrapper   jalview.util.ShortcutKeyMaskExWrapper 0.1111111111.1%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty 0.1111111111.1%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.10937510.9%
jalview.util.StringUtils   jalview.util.StringUtils 0.098461549.8%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.0953063449.5%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker 0.09523819.5%
jalview.util.ColorUtils   jalview.util.ColorUtils 0.0860215058.6%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour 0.082191788.2%
jalview.gui.ProgressBar   jalview.gui.ProgressBar 0.081300818.1%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes 0.070175447%
jalview.analysis.CrossRef   jalview.analysis.CrossRef 0.067622956.8%
jalview.gui.IdPanel   jalview.gui.IdPanel 0.067264576.7%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme 0.066666676.7%
jalview.log.JLogger   jalview.log.JLogger 0.065934076.6%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster 0.0657894766.6%
jalview.io.FileFormat   jalview.io.FileFormat 0.0620155046.2%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle 0.061224496.1%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu 0.059405945.9%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer 0.0512820525.1%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes 0.0496894425%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.04952835%
jalview.bin.Console   jalview.bin.Console 0.0492610824.9%
jalview.util.Platform   jalview.util.Platform 0.0471698124.7%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription 0.0454.5%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient 0.0448717964.5%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager 0.0444.4%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel 0.0430672284.3%
jalview.gui.SeqPanel   jalview.gui.SeqPanel 0.042904294.3%
jalview.bin.Cache   jalview.bin.Cache 0.0385674953.9%
jalview.datamodel.ContactListImpl   jalview.datamodel.ContactListImpl 0.0338983053.4%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient 0.0310559013.1%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.027397262.7%
jalview.gui.IdCanvas   jalview.gui.IdCanvas 0.0245614032.5%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.0241691842.4%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection 0.0240549842.4%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder 0.0238095242.4%
jalview.util.MappingUtils   jalview.util.MappingUtils 0.0237068962.4%
jalview.gui.ScalePanel   jalview.gui.ScalePanel 0.02343752.3%
jalview.util.Format   jalview.util.Format 0.0227743282.3%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme 0.0169491531.7%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer 0.0158415851.6%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer 0.0144230771.4%
jalview.controller.AlignViewController   jalview.controller.AlignViewController 0.0136518771.4%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.0127388541.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport 0.0122699381.2%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels 0.01150747951.2%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas 0.0080160320.8%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer 0.007547170.8%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils 0.00657894740.7%
jalview.bin.Jalview   jalview.bin.Jalview 0.0045703840.5%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer 0.00362318850.4%
jalview.gui.Desktop   jalview.gui.Desktop 0.00227790440.2%