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com.stevesoft.pat.Or
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mc_view.Atom
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jalview.bin.Jalview
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jalview.gui.JvSwingUtils
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jalview.io.JalviewFileChooser
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jalview.gui.Desktop
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
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jalview.bin.Console
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jalview.gui.AnnotationLabels
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jalview.io.PDBFeatureSettings
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jalview.analysis.AnnotationSorter
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jalview.ws.rest.InputType
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jalview.log.JLoggerLog4j
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jalview.gui.Desktop.MyDesktopManager
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com.stevesoft.pat.patInt
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jalview.bin.JalviewTaskbar
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jalview.util.Platform
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jalview.ws.jws1.WS1Client
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jalview.fts.core.FTSRestClient
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jalview.ws.jws2.JabaParamStore
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jalview.gui.AnnotationPanel
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jalview.workers.AlignCalcWorker
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jalview.io.AppletFormatAdapter
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jalview.ext.jmol.JmolCommands
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jalview.schemes.PIDColourScheme
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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jalview.datamodel.GroupSet
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jalview.gui.StructureViewer
jalview.gui.StructureViewer
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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jalview.io.FileFormat
jalview.io.FileFormat
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1230769212.3%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.structure.StructureCommand
jalview.structure.StructureCommand
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0.1212%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.1095890411%
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.1028806610.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.bin.argparser.Arg
jalview.bin.argparser.Arg
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
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jalview.util.FileUtils
jalview.util.FileUtils
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0.097378289.7%
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jalview.datamodel.ContactMatrixI
jalview.datamodel.ContactMatrixI
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0.0970873769.7%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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0.096774199.7%
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jalview.gui.StructureChooser
jalview.gui.StructureChooser
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0.0966628349.7%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.096192389.6%
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jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
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jalview.util.JSONUtils
jalview.util.JSONUtils
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0.090909099.1%
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jalview.util.ChannelProperties
jalview.util.ChannelProperties
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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jalview.ws.dbsources.Pdb
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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jalview.structure.StructureMapping
jalview.structure.StructureMapping
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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jalview.urls.UrlProvider
jalview.urls.UrlProvider
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jalview.schemes.FeatureColour
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jalview.datamodel.ColumnSelection.IntList
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jalview.gui.IdPanel
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jalview.util.LaunchUtils
jalview.util.LaunchUtils
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jalview.fts.service.pdb.PDBFTSRestClient
jalview.fts.service.pdb.PDBFTSRestClient
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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jalview.urls.CustomUrlProvider
jalview.urls.CustomUrlProvider
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jalview.datamodel.HiddenColumns
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jalview.analysis.GeneticCodes
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
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jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
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org.json.simple.JSONObject
org.json.simple.JSONObject
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jalview.urls.IdentifiersUrlProvider
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jalview.util.UrlLink
jalview.util.UrlLink
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
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jalview.datamodel.HiddenSequences
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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jalview.util.MappingUtils
jalview.util.MappingUtils
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jalview.gui.structurechooser.PDBStructureChooserQuerySource
jalview.gui.structurechooser.PDBStructureChooserQuerySource
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jalview.datamodel.HiddenColumnsCursor
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jalview.ws.dbsources.Uniprot
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mc_view.PDBfile
mc_view.PDBfile
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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jalview.datamodel.SearchResults
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jalview.gui.SeqPanel
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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jalview.gui.JvOptionPane
jalview.gui.JvOptionPane
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jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
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org.json.simple.JSONArray
org.json.simple.JSONArray
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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0.007547170.8%
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
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com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
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0.00278551530.3%
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jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
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0.00105042020.1%
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