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Coverage Report

Test testBuildColoursMap

Test
testBuildColoursMap 1PASS 28 Nov 18:08:10 0.027
 
testBuildColoursMap
jalview.io.DataSourceType   jalview.io.DataSourceType 1.0100%
jalview.renderer.ScaleRenderer.ScaleMark   jalview.renderer.ScaleRenderer.ScaleMark 1.0100%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts 1.0100%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme 1.0100%
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel 0.9494%
jalview.structure.AtomSpecModel   jalview.structure.AtomSpecModel 0.833333383.3%
jalview.analysis.Conservation   jalview.analysis.Conservation 0.81773481.8%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.7812578.1%
jalview.util.LinkedIdentityHashSet   jalview.util.LinkedIdentityHashSet 0.7727272577.3%
jalview.datamodel.Profiles   jalview.datamodel.Profiles 0.7333333573.3%
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer 0.7142857371.4%
jalview.util.LinkedIdentityHashSet.IdentityWrapper   jalview.util.LinkedIdentityHashSet.IdentityWrapper 0.7142857371.4%
jalview.ws.jws2.jabaws2.Jws2InstanceFactory   jalview.ws.jws2.jabaws2.Jws2InstanceFactory 0.770%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread 0.696969769.7%
jalview.schemes.ScoreColourScheme   jalview.schemes.ScoreColourScheme 0.687568.8%
jalview.datamodel.RangeIterator   jalview.datamodel.RangeIterator 0.675675767.6%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder 0.6428571364.3%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme 0.6190476461.9%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame 0.581220758.1%
jalview.workers.ConservationThread   jalview.workers.ConservationThread 0.568965556.9%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance 0.5057471450.6%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper 0.550%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties 0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme 0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme 0.550%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme 0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme 0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme 0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme 0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme 0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme 0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme 0.550%
jalview.gui.SplashScreen.SplashImage   jalview.gui.SplashScreen.SplashImage 0.4705882447.1%
jalview.renderer.ScaleRenderer   jalview.renderer.ScaleRenderer 0.4444%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer 0.427884642.8%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11 0.4166666641.7%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme 0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme 0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme 0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme 0.440%
jalview.log.JalviewAppender   jalview.log.JalviewAppender 0.388888938.9%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager 0.380952438.1%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.37537.5%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList 0.3644859836.4%
jalview.io.FastaFile   jalview.io.FastaFile 0.3603603536%
jalview.io.FileFormats   jalview.io.FileFormats 0.3636%
jalview.util.MessageManager   jalview.util.MessageManager 0.3571428735.7%
jalview.io.AlignFile   jalview.io.AlignFile 0.356164435.6%
jalview.io.FileLoader   jalview.io.FileLoader 0.3511705735.1%
jalview.util.Comparison   jalview.util.Comparison 0.3425196734.3%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount 0.3418181834.2%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle 0.3320312533.2%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges 0.3201320232%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel 0.3156654831.6%
jalview.renderer.seqfeatures.FeatureColourFinder   jalview.renderer.seqfeatures.FeatureColourFinder 0.313725531.4%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader 0.2928571429.3%
jalview.gui.AlignViewport   jalview.gui.AlignViewport 0.2899543329%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme 0.285714328.6%
jalview.io.IdentifyFile   jalview.io.IdentifyFile 0.279365127.9%
jalview.gui.IdCanvas   jalview.gui.IdCanvas 0.273684227.4%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport 0.2525%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport 0.2465857424.7%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes 0.2456140424.6%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset 0.2272727322.7%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster 0.223684222.4%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.2025316520.3%
jalview.ext.rbvi.chimera.ChimeraCommands   jalview.ext.rbvi.chimera.ChimeraCommands 0.198412719.8%
jalview.ws.jws2.JabaWsServerQuery   jalview.ws.jws2.JabaWsServerQuery 0.1979166719.8%
jalview.gui.ScalePanel   jalview.gui.ScalePanel 0.187518.8%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme 0.1739130517.4%
jalview.structure.StructureMapping   jalview.structure.StructureMapping 0.1709844617.1%
jalview.structure.StructureCommandsBase   jalview.structure.StructureCommandsBase 0.1707317117.1%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.1695501817%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter 0.1674876816.7%
jalview.io.FileParse   jalview.io.FileParse 0.164345416.4%
jalview.ws.jws1.WS1Client   jalview.ws.jws1.WS1Client 0.1616%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.1508379915.1%
jalview.util.Format   jalview.util.Format 0.1490683314.9%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme 0.1475409914.8%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.1462264214.6%
jalview.log.JLogger   jalview.log.JLogger 0.1428571514.3%
jalview.gui.Desktop.MyDesktopPane   jalview.gui.Desktop.MyDesktopPane 0.1428571514.3%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher 0.1408450814.1%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore 0.14062514.1%
jalview.structures.models.AAStructureBindingModel   jalview.structures.models.AAStructureBindingModel 0.125727612.6%
jalview.io.FormatAdapter   jalview.io.FormatAdapter 0.1212%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme 0.1176470611.8%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.1156462611.6%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels 0.11538461611.5%
junit.extensions.PA   junit.extensions.PA 0.11538461611.5%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.11428571511.4%
jalview.gui.Desktop.MyDesktopManager   jalview.gui.Desktop.MyDesktopManager 0.1111111111.1%
jalview.util.ShortcutKeyMaskExWrapper   jalview.util.ShortcutKeyMaskExWrapper 0.1111111111.1%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty 0.1111111111.1%
jalview.io.FileFormat   jalview.io.FileFormat 0.1085271310.9%
jalview.log.JLoggerLog4j   jalview.log.JLoggerLog4j 0.10679611610.7%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter 0.0993788849.9%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker 0.09523819.5%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas 0.095190389.5%
junit.extensions.PrivilegedAccessor   junit.extensions.PrivilegedAccessor 0.092050219.2%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.088857048.9%
jalview.util.CaseInsensitiveString   jalview.util.CaseInsensitiveString 0.086956528.7%
jalview.util.ColorUtils   jalview.util.ColorUtils 0.0860215058.6%
jalview.datamodel.PDBEntry   jalview.datamodel.PDBEntry 0.083700448.4%
jalview.gui.Console   jalview.gui.Console 0.082568818.3%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour 0.082191788.2%
jalview.gui.ProgressBar   jalview.gui.ProgressBar 0.081300818.1%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.0757.5%
jalview.bin.Console   jalview.bin.Console 0.068965526.9%
jalview.gui.Desktop   jalview.gui.Desktop 0.067767666.8%
jalview.gui.IdPanel   jalview.gui.IdPanel 0.067264576.7%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme 0.066666676.7%
jalview.analysis.CrossRef   jalview.analysis.CrossRef 0.063524596.4%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection 0.061855676.2%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix 0.0617283966.2%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle 0.061224496.1%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager 0.066%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu 0.059405945.9%
jalview.util.Platform   jalview.util.Platform 0.0566037745.7%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer 0.0512820525.1%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel 0.050420175%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes 0.0496894425%
jalview.gui.WsParamSetManager   jalview.gui.WsParamSetManager 0.0429447854.3%
jalview.bin.Cache   jalview.bin.Cache 0.0385674953.9%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient 0.0310559013.1%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.027397262.7%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer 0.0257425742.6%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.0241691842.4%
jalview.util.StringUtils   jalview.util.StringUtils 0.021538462.2%
jalview.gui.SeqPanel   jalview.gui.SeqPanel 0.0171617161.7%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme 0.0169491531.7%
jalview.controller.AlignViewController   jalview.controller.AlignViewController 0.0136518771.4%
jalview.datamodel.SearchResults   jalview.datamodel.SearchResults 0.0128205131.3%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq 0.0128205131.3%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.0127388541.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport 0.0122699381.2%
jalview.datamodel.SequenceGroup   jalview.datamodel.SequenceGroup 0.0121028741.2%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels 0.01150747951.2%
jalview.bin.Jalview   jalview.bin.Jalview 0.0082266910.8%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer 0.007547170.8%
jalview.gui.QuitHandler   jalview.gui.QuitHandler 0.00722021660.7%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer 0.00362318850.4%
jalview.viewmodel.seqfeatures.FeatureRendererModel   jalview.viewmodel.seqfeatures.FeatureRendererModel 0.00312989040.3%