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Test testAddStrToSingleSeqViewJMol

Test
testAddStrToSingleSeqViewJMol 1PASS 28 Nov 18:08:13 3.27
 
testAddStrToSingleSeqViewJMol
com.stevesoft.pat.patInf   com.stevesoft.pat.patInf 1.0100%
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jalview.renderer.ScaleRenderer.ScaleMark   jalview.renderer.ScaleRenderer.ScaleMark 1.0100%
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jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher 0.678571467.9%
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jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.64062564.1%
jalview.ws.jws2.JabaWsServerQuery   jalview.ws.jws2.JabaWsServerQuery 0.62562.5%
jalview.util.ParseHtmlBodyAndLinks   jalview.util.ParseHtmlBodyAndLinks 0.594202959.4%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame 0.581220758.1%
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jalview.workers.ConservationThread   jalview.workers.ConservationThread 0.568965556.9%
jalview.util.CaseInsensitiveString   jalview.util.CaseInsensitiveString 0.565217456.5%
jalview.ext.jmol.JmolParser   jalview.ext.jmol.JmolParser 0.5656%
jalview.renderer.ScaleRenderer   jalview.renderer.ScaleRenderer 0.5656%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager 0.559523856%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer 0.5288461452.9%
jalview.structures.models.AAStructureBindingModel   jalview.structures.models.AAStructureBindingModel 0.525029152.5%
com.stevesoft.pat.StrPos   com.stevesoft.pat.StrPos 0.523255852.3%
jalview.io.FileLoader   jalview.io.FileLoader 0.521739152.2%
jalview.gui.AppJmolBinding   jalview.gui.AppJmolBinding 0.514018751.4%
mc_view.PDBChain   mc_view.PDBChain 0.508241850.8%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport 0.550%
com.stevesoft.pat.OrMark   com.stevesoft.pat.OrMark 0.550%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties 0.550%
mc_view.Bond   mc_view.Bond 0.550%
com.stevesoft.pat.wrap.StringWrap   com.stevesoft.pat.wrap.StringWrap 0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme 0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme 0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme 0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme 0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme 0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme 0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme 0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme 0.550%
com.stevesoft.pat.oneChar   com.stevesoft.pat.oneChar 0.485714348.6%
jalview.structure.StructureImportSettings   jalview.structure.StructureImportSettings 0.485714348.6%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer 0.4811881248.1%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper 0.466101746.6%
jalview.ext.jmol.JalviewJmolBinding   jalview.ext.jmol.JalviewJmolBinding 0.4655870546.6%
jalview.io.BioJsHTMLOutput   jalview.io.BioJsHTMLOutput 0.46446.4%
jalview.io.StructureFile   jalview.io.StructureFile 0.460465146%
jalview.datamodel.PDBEntry   jalview.datamodel.PDBEntry 0.4449339244.5%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient 0.4429530244.3%
jalview.gui.AppJmol.RenderPanel   jalview.gui.AppJmol.RenderPanel 0.4324324443.2%
jalview.gui.AlignViewport   jalview.gui.AlignViewport 0.4315068443.2%
jalview.ws.utils.UrlDownloadClient   jalview.ws.utils.UrlDownloadClient 0.4285714342.9%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11 0.4166666641.7%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq 0.4153846241.5%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset 0.409090940.9%
jalview.gui.ProgressBar   jalview.gui.ProgressBar 0.4065040640.7%
jalview.io.FileFormats   jalview.io.FileFormats 0.440%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource 0.440%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme 0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme 0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme 0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme 0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme 0.440%
jalview.gui.IdCanvas   jalview.gui.IdCanvas 0.3894736838.9%
jalview.log.JalviewAppender   jalview.log.JalviewAppender 0.388888938.9%
org.json.simple.parser.Yylex   org.json.simple.parser.Yylex 0.3853503238.5%
jalview.datamodel.SearchResults   jalview.datamodel.SearchResults 0.384615438.5%
jalview.gui.AppJmol   jalview.gui.AppJmol 0.3759398537.6%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.37537.5%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel 0.374558337.5%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer 0.372282637.2%
jalview.util.Format   jalview.util.Format 0.3685300436.9%
jalview.util.Comparison   jalview.util.Comparison 0.3661417436.6%
jalview.util.MessageManager   jalview.util.MessageManager 0.3571428735.7%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount 0.3563636235.6%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature 0.35251835.3%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager 0.3413333334.1%
jalview.io.AlignFile   jalview.io.AlignFile 0.3356164433.6%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges 0.3333333433.3%
jalview.gui.StructureViewerBase   jalview.gui.StructureViewerBase 0.332842433.3%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle 0.3320312533.2%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster 0.3289473732.9%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.3248407532.5%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription 0.31531.5%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer 0.3141025631.4%
jalview.renderer.seqfeatures.FeatureColourFinder   jalview.renderer.seqfeatures.FeatureColourFinder 0.313725531.4%
com.stevesoft.pat.Pattern   com.stevesoft.pat.Pattern 0.3055555530.6%
jalview.structure.StructureMapping   jalview.structure.StructureMapping 0.2953367829.5%
org.json.simple.parser.JSONParser   org.json.simple.parser.JSONParser 0.2945544429.5%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.292529.2%
jalview.ws.jws2.SequenceAnnotationWSClient   jalview.ws.jws2.SequenceAnnotationWSClient 0.2903225729%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.2889273528.9%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher 0.2887323828.9%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource 0.285714328.6%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle 0.285714328.6%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.285714328.6%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme 0.285714328.6%
jalview.io.IdentifyFile   jalview.io.IdentifyFile 0.282539728.3%
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mc_view.Atom   mc_view.Atom 0.282051328.2%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader 0.2714285927.1%
com.stevesoft.pat.Or   com.stevesoft.pat.Or 0.2692307826.9%
jalview.viewmodel.seqfeatures.FeatureRendererModel   jalview.viewmodel.seqfeatures.FeatureRendererModel 0.2660406826.6%
jalview.gui.ScalePanel   jalview.gui.ScalePanel 0.26562526.6%
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jalview.gui.SeqCanvas   jalview.gui.SeqCanvas 0.2625250526.3%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme 0.2608695626.1%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.258503425.9%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore 0.2567975825.7%
com.stevesoft.pat.Regex   com.stevesoft.pat.Regex 0.250909125.1%
jalview.renderer.AnnotationRendererFactory   jalview.renderer.AnnotationRendererFactory 0.2525%
jalview.ext.jmol.JmolCommands   jalview.ext.jmol.JmolCommands 0.2440944924.4%
jalview.ws.uimodel.AlignAnalysisUIText   jalview.ws.uimodel.AlignAnalysisUIText 0.2439024424.4%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment 0.2435897424.4%
jalview.util.HttpUtils   jalview.util.HttpUtils 0.2397660824%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
jalview.structure.StructureCommandsBase   jalview.structure.StructureCommandsBase 0.2317073223.2%
com.stevesoft.pat.Range   com.stevesoft.pat.Range 0.2272727322.7%
com.stevesoft.pat.Bracket   com.stevesoft.pat.Bracket 0.22522.5%
jalview.datamodel.features.FeatureAttributes   jalview.datamodel.features.FeatureAttributes 0.224806222.5%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client 0.2228915722.3%
jalview.viewmodel.seqfeatures.FeaturesDisplayed   jalview.viewmodel.seqfeatures.FeaturesDisplayed 0.2187521.9%
jalview.gui.PromptUserConfig   jalview.gui.PromptUserConfig 0.215909121.6%
jalview.io.PDBFeatureSettings   jalview.io.PDBFeatureSettings 0.2142857221.4%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels 0.2140391321.4%
jalview.util.QuickSort   jalview.util.QuickSort 0.2135922321.4%
jalview.datamodel.features.FeatureAttributes.AttributeData   jalview.datamodel.features.FeatureAttributes.AttributeData 0.2127659621.3%
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jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.2109704621.1%
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jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter 0.1970443319.7%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.1899441319%
jalview.datamodel.SearchResults.Match   jalview.datamodel.SearchResults.Match 0.1818181918.2%
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jalview.gui.StructureViewer   jalview.gui.StructureViewer 0.1782178317.8%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme 0.176470617.6%
com.stevesoft.pat.patInt   com.stevesoft.pat.patInt 0.17517.5%
jalview.io.JalviewFileChooser   jalview.io.JalviewFileChooser 0.1743869217.4%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter 0.1677018716.8%
jalview.log.JLogger   jalview.log.JLogger 0.1648351716.5%
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jalview.gui.Desktop.MyDesktopManager   jalview.gui.Desktop.MyDesktopManager 0.1555555615.6%
jalview.bin.Console   jalview.bin.Console 0.1477832514.8%
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jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector 0.12408759412.4%
jalview.io.FormatAdapter   jalview.io.FormatAdapter 0.1212%
jalview.structure.StructureCommand   jalview.structure.StructureCommand 0.1212%
jalview.util.ColorUtils   jalview.util.ColorUtils 0.1182795711.8%
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jalview.gui.BlogReader   jalview.gui.BlogReader 0.11325966611.3%
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jalview.ws.sifts.SiftsSettings   jalview.ws.sifts.SiftsSettings 0.1111111111.1%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty 0.1111111111.1%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour 0.1095890411%
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jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix 0.1028806610.3%
jalview.datamodel.DBRefEntry   jalview.datamodel.DBRefEntry 0.1027397310.3%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile 0.10256410410.3%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.101415110.1%
com.stevesoft.pat.parsePerl   com.stevesoft.pat.parsePerl 0.098639469.9%
jalview.util.StringUtils   jalview.util.StringUtils 0.098461549.8%
org.json.simple.parser.Yytoken   org.json.simple.parser.Yytoken 0.096774199.7%
jalview.util.ChannelProperties   jalview.util.ChannelProperties 0.0965517249.7%
jalview.gui.Desktop   jalview.gui.Desktop 0.095671989.6%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker 0.09523819.5%
jalview.io.FileFormat   jalview.io.FileFormat 0.0930232559.3%
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jalview.schemes.FeatureColour   jalview.schemes.FeatureColour 0.090526319.1%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.087613298.8%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam 0.086956528.7%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb 0.085106388.5%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher 0.0833333368.3%
jalview.gui.Console   jalview.gui.Console 0.082568818.3%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl 0.081081088.1%
jalview.urls.UrlProvider   jalview.urls.UrlProvider 0.079207927.9%
jalview.datamodel.ContactMapHolder   jalview.datamodel.ContactMapHolder 0.076923087.7%
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jalview.analysis.CrossRef   jalview.analysis.CrossRef 0.063524596.4%
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jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher 0.0577777775.8%
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jalview.bin.Cache   jalview.bin.Cache 0.056473835.6%
jalview.gui.SeqPanel   jalview.gui.SeqPanel 0.054785485.5%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes 0.0496894425%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.04566214.6%
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org.json.simple.JSONObject   org.json.simple.JSONObject 0.037735853.8%
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jalview.util.UrlLink   jalview.util.UrlLink 0.034090913.4%
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jalview.datamodel.Mapping   jalview.datamodel.Mapping 0.0216450232.2%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection 0.017182131.7%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot 0.0155642021.6%
mc_view.PDBfile   mc_view.PDBfile 0.0150375941.5%
jalview.controller.AlignViewController   jalview.controller.AlignViewController 0.0136518771.4%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils 0.0124269011.2%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport 0.0122699381.2%
jalview.bin.Jalview   jalview.bin.Jalview 0.0118829981.2%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher 0.0089285720.9%
jalview.bin.argparser.BootstrapArgs   jalview.bin.argparser.BootstrapArgs 0.0082644620.8%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene 0.0081632650.8%
org.json.simple.JSONArray   org.json.simple.JSONArray 0.0080645160.8%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer 0.007547170.8%
jalview.gui.QuitHandler   jalview.gui.QuitHandler 0.00722021660.7%
com.stevesoft.pat.CaseMgr   com.stevesoft.pat.CaseMgr 0.00278551530.3%
jalview.schemes.ResidueProperties   jalview.schemes.ResidueProperties 0.00105042020.1%