|
0.31111112
|
jalview.io.ScoreMatrixFileTest.testParse_ncbiFormatjalview.io.ScoreMatrixFileTest.testParse_ncbiFormat
|
1PASS
|
|
|
0.2888889
|
jalview.gui.CalculationChooserTest.testGetApplicableScoreModelsjalview.gui.CalculationChooserTest.testGetApplicableScoreModels
|
1PASS
|
|
|
0.24444444
|
jalview.project.Jalview2xmlTests.testCopyViewSettingsjalview.project.Jalview2xmlTests.testCopyViewSettings
|
1PASS
|
|
|
0.24444444
|
jalview.project.Jalview2xmlTests.viewRefPdbAnnotationjalview.project.Jalview2xmlTests.viewRefPdbAnnotation
|
1PASS
|
|
|
0.24444444
|
jalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMol
|
1PASS
|
|
|
0.24444444
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews
|
1PASS
|
|
|
0.24444444
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroup
|
1PASS
|
|
|
0.24444444
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_withSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_withSelectionGroup
|
1PASS
|
|
|
0.24444444
|
jalview.analysis.scoremodels.ScoreMatrixTest.testSymmetricjalview.analysis.scoremodels.ScoreMatrixTest.testSymmetric
|
1PASS
|
|
|
0.24444444
|
jalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMol
|
1PASS
|
|
|
0.24444444
|
jalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMade
|
1PASS
|
|
|
0.24444444
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings
|
1PASS
|
|
|
0.24444444
|
jalview.project.Jalview2xmlTests.gatherViewsHerejalview.project.Jalview2xmlTests.gatherViewsHere
|
1PASS
|
|
|
0.22222222
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances
|
1PASS
|
|
|
0.22222222
|
jalview.project.Jalview2xmlTests.testPcaViewAssociationjalview.project.Jalview2xmlTests.testPcaViewAssociation
|
1PASS
|
|
|
0.22222222
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumnsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumns
|
1PASS
|
|
|
0.22222222
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumnjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumn
|
1PASS
|
|
|
0.22222222
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModeljalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel
|
1PASS
|
|
|
0.22222222
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParamsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParams
|
1PASS
|
|
|
0.2
|
jalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeaturesjalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeatures
|
1PASS
|
|
|
0.2
|
jalview.ext.jmol.JmolParserTest.testAlignmentLoaderjalview.ext.jmol.JmolParserTest.testAlignmentLoader
|
1PASS
|
|
|
0.2
|
jalview.analysis.TestAlignSeq.testPrintAlignmentjalview.analysis.TestAlignSeq.testPrintAlignment
|
1PASS
|
|
|
0.17777778
|
jalview.analysis.scoremodels.ScoreMatrixTest.testEqualsAndHashCodejalview.analysis.scoremodels.ScoreMatrixTest.testEqualsAndHashCode
|
1PASS
|
|
|
0.15555556
|
jalview.analysis.AlignSeqTest.testIndexEncode_nucleotidejalview.analysis.AlignSeqTest.testIndexEncode_nucleotide
|
1PASS
|
|
|
0.15555556
|
jalview.analysis.AlignSeqTest.testIndexEncode_peptidejalview.analysis.AlignSeqTest.testIndexEncode_peptide
|
1PASS
|
|
|
0.15555556
|
jalview.datamodel.AlignmentAnnotationTests.testLiftOverjalview.datamodel.AlignmentAnnotationTests.testLiftOver
|
1PASS
|
|
|
0.15555556
|
mc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotationsmc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotations
|
1PASS
|
|
|
0.15555556
|
jalview.analysis.TestAlignSeq.testGetMappingForS1jalview.analysis.TestAlignSeq.testGetMappingForS1
|
1PASS
|
|
|
0.15555556
|
mc_view.PDBChainTest.testMakeExactMappingmc_view.PDBChainTest.testMakeExactMapping
|
1PASS
|
|
|
0.15555556
|
mc_view.PDBfileTest.testParse_withJmol_noAnnotationsmc_view.PDBfileTest.testParse_withJmol_noAnnotations
|
1PASS
|
|
|
0.13333334
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumnjalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumn
|
1PASS
|
|
|
0.13333334
|
jalview.schemes.ClustalxColourSchemeTest.testFindColourjalview.schemes.ClustalxColourSchemeTest.testFindColour
|
1PASS
|
|
|
0.13333334
|
jalview.analysis.scoremodels.ScoreMatrixTest.testGetMinimumScorejalview.analysis.scoremodels.ScoreMatrixTest.testGetMinimumScore
|
1PASS
|
|
|
0.13333334
|
jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation
|
1PASS
|
|
|
0.13333334
|
jalview.gui.AlignViewportTest.testGetConsensusSeqjalview.gui.AlignViewportTest.testGetConsensusSeq
|
1PASS
|
|
|
0.13333334
|
jalview.datamodel.AlignmentViewTest.testGetVisibleContigsjalview.datamodel.AlignmentViewTest.testGetVisibleContigs
|
1PASS
|
|
|
0.13333334
|
jalview.gui.SeqPanelTest.testFindColumn_unwrappedjalview.gui.SeqPanelTest.testFindColumn_unwrapped
|
1PASS
|
|
|
0.13333334
|
jalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessagejalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessage
|
1PASS
|
|
|
0.13333334
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforManyViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforManyViews
|
1PASS
|
|
|
0.13333334
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntry
|
1PASS
|
|
|
0.13333334
|
jalview.gui.ScalePanelTest.testPreventNegativeStartColumnjalview.gui.ScalePanelTest.testPreventNegativeStartColumn
|
1PASS
|
|
|
0.13333334
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResiduejalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResidue
|
1PASS
|
|
|
0.13333334
|
jalview.analysis.scoremodels.ScoreMatrixTest.testGetMaximumScorejalview.analysis.scoremodels.ScoreMatrixTest.testGetMaximumScore
|
1PASS
|
|
|
0.13333334
|
jalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGaps
|
1PASS
|
|
|
0.13333334
|
jalview.gui.AlignViewportTest.testDeregisterMapping_withReferencejalview.gui.AlignViewportTest.testDeregisterMapping_withReference
|
1PASS
|
|
|
0.13333334
|
jalview.analysis.scoremodels.ScoreMatrixTest.testBlosum62_valuesjalview.analysis.scoremodels.ScoreMatrixTest.testBlosum62_values
|
1PASS
|
|
|
0.13333334
|
jalview.io.BackupFilesTest.backupsEnabledNoRollMaxTestjalview.io.BackupFilesTest.backupsEnabledNoRollMaxTest
|
1PASS
|
|
|
0.13333334
|
jalview.io.FeaturesFileTest.testParse_mixedJalviewGffjalview.io.FeaturesFileTest.testParse_mixedJalviewGff
|
1PASS
|
|
|
0.13333334
|
jalview.io.FeaturesFileTest.testParsejalview.io.FeaturesFileTest.testParse
|
1PASS
|
|
|
0.13333334
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqsjalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqs
|
1PASS
|
|
|
0.13333334
|
jalview.gui.ScalePanelTest.testSelectColumns_withHiddenjalview.gui.ScalePanelTest.testSelectColumns_withHidden
|
1PASS
|
|
|
0.13333334
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_noAnnotationsjalview.gui.SeqPanelTest.testFindMousePosition_wrapped_noAnnotations
|
1PASS
|
|
|
0.13333334
|
jalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePositionjalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePosition
|
1PASS
|
|
|
0.13333334
|
jalview.gui.AlignViewportTest.testDeregisterMapping_withNoReferencejalview.gui.AlignViewportTest.testDeregisterMapping_withNoReference
|
1PASS
|
|
|
0.13333334
|
jalview.gui.AlignFrameTest.testNewView_colourThresholdsjalview.gui.AlignFrameTest.testNewView_colourThresholds
|
1PASS
|
|
|
0.13333334
|
jalview.analysis.scoremodels.ScoreMatrixTest.testComputePairwiseScoresjalview.analysis.scoremodels.ScoreMatrixTest.testComputePairwiseScores
|
1PASS
|
|
|
0.13333334
|
jalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFiltersjalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFilters
|
1PASS
|
|
|
0.13333334
|
jalview.project.Jalview2xmlTests.testRNAStructureRecoveryjalview.project.Jalview2xmlTests.testRNAStructureRecovery
|
1PASS
|
|
|
0.13333334
|
jalview.io.FeaturesFileTest.simpleGff3FileLoaderjalview.io.FeaturesFileTest.simpleGff3FileLoader
|
1PASS
|
|
|
0.13333334
|
jalview.gui.SeqPanelTest.testFindColumn_wrappedjalview.gui.SeqPanelTest.testFindColumn_wrapped
|
1PASS
|
|
|
0.13333334
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_annotationsjalview.gui.SeqPanelTest.testFindMousePosition_wrapped_annotations
|
1PASS
|
|
|
0.13333334
|
jalview.gui.ScalePanelTest.testBuildPopupMenujalview.gui.ScalePanelTest.testBuildPopupMenu
|
1PASS
|
|
|
0.13333334
|
jalview.analysis.scoremodels.ScoreMatrixTest.testOutputMatrix_roundTripjalview.analysis.scoremodels.ScoreMatrixTest.testOutputMatrix_roundTrip
|
1PASS
|
|
|
0.13333334
|
jalview.gui.AlignFrameTest.testNewView_dsRefPreservedjalview.gui.AlignFrameTest.testNewView_dsRefPreserved
|
1PASS
|
|
|
0.13333334
|
jalview.gui.AlignViewportTest.testSetGlobalColourSchemejalview.gui.AlignViewportTest.testSetGlobalColourScheme
|
1PASS
|
|
|
0.13333334
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeaturesjalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeatures
|
1PASS
|
|
|
0.13333334
|
jalview.gui.FeatureSettingsTest.testSaveLoadjalview.gui.FeatureSettingsTest.testSaveLoad
|
1PASS
|
|
|
0.13333334
|
jalview.analysis.scoremodels.ScoreMatrixTest.testcomputeSimilarity_matchLongestSequencejalview.analysis.scoremodels.ScoreMatrixTest.testcomputeSimilarity_matchLongestSequence
|
1PASS
|
|
|
0.13333334
|
jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice
|
1PASS
|
|
|
0.13333334
|
jalview.analysis.scoremodels.ScoreMatrixTest.testcomputeSimilarity_matchShortestSequencejalview.analysis.scoremodels.ScoreMatrixTest.testcomputeSimilarity_matchShortestSequence
|
1PASS
|
|
|
0.13333334
|
jalview.project.Jalview2xmlTests.testTCoffeeScoresjalview.project.Jalview2xmlTests.testTCoffeeScores
|
1PASS
|
|
|
0.13333334
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholdsjalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholds
|
1PASS
|
|
|
0.13333334
|
jalview.renderer.seqfeatures.FeatureRendererTest.testIsVisiblejalview.renderer.seqfeatures.FeatureRendererTest.testIsVisible
|
1PASS
|
|
|
0.13333334
|
jalview.schemes.ColourSchemesTest.testGetColourSchemejalview.schemes.ColourSchemesTest.testGetColourScheme
|
1PASS
|
|
|
0.13333334
|
jalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTestjalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTest
|
1PASS
|
|
|
0.13333334
|
jalview.gui.AlignViewportTest.testSetSelectionGroupjalview.gui.AlignViewportTest.testSetSelectionGroup
|
1PASS
|
|
|
0.13333334
|
jalview.io.FeaturesFileTest.testPrintGffFormatjalview.io.FeaturesFileTest.testPrintGffFormat
|
1PASS
|
|
|
0.13333334
|
jalview.renderer.ScaleRendererTest.testCalculateMarksjalview.renderer.ScaleRendererTest.testCalculateMarks
|
1PASS
|
|
|
0.13333334
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scaleAbovejalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scaleAbove
|
1PASS
|
|
|
0.13333334
|
jalview.gui.PaintRefresherTest.testGetAssociatedPanelsjalview.gui.PaintRefresherTest.testGetAssociatedPanels
|
1PASS
|
|
|
0.13333334
|
jalview.io.FeaturesFileTest.testParse_pureGff3jalview.io.FeaturesFileTest.testParse_pureGff3
|
1PASS
|
|
|
0.13333334
|
jalview.io.BackupFilesTest.backupsEnabledRollMaxTestjalview.io.BackupFilesTest.backupsEnabledRollMaxTest
|
1PASS
|
|
|
0.13333334
|
jalview.io.JSONFileTest.testGrpParsed_colourNonejalview.io.JSONFileTest.testGrpParsed_colourNone
|
1PASS
|
|
|
0.13333334
|
jalview.io.gff.GffTests.testResolveExonerateGffjalview.io.gff.GffTests.testResolveExonerateGff
|
1PASS
|
|
|
0.13333334
|
jalview.schemes.Blosum62ColourSchemeTest.testFindColourjalview.schemes.Blosum62ColourSchemeTest.testFindColour
|
1PASS
|
|
|
0.13333334
|
jalview.analysis.scoremodels.ScoreMatrixTest.testGetSizejalview.analysis.scoremodels.ScoreMatrixTest.testGetSize
|
1PASS
|
|
|
0.13333334
|
jalview.controller.AlignViewControllerTest.testFindColumnsWithFeaturejalview.controller.AlignViewControllerTest.testFindColumnsWithFeature
|
1PASS
|
|
|
0.13333334
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_forAlignFramejalview.gui.ColourMenuHelperTest.testAddMenuItems_forAlignFrame
|
1PASS
|
|
|
0.13333334
|
jalview.io.BackupFilesTest.noBackupsEnabledTestjalview.io.BackupFilesTest.noBackupsEnabledTest
|
1PASS
|
|
|
0.13333334
|
jalview.project.Jalview2xmlTests.testColourByAnnotScoresjalview.project.Jalview2xmlTests.testColourByAnnotScores
|
1PASS
|
|
|
0.13333334
|
jalview.gui.AlignViewportTest.testUpdateConservation_qualityOnlyjalview.gui.AlignViewportTest.testUpdateConservation_qualityOnly
|
1PASS
|
|
|
0.13333334
|
jalview.analysis.scoremodels.ScoreModelsTest.testConstructorjalview.analysis.scoremodels.ScoreModelsTest.testConstructor
|
1PASS
|
|
|
0.13333334
|
jalview.ext.jmol.JmolParserTest.testFileParserjalview.ext.jmol.JmolParserTest.testFileParser
|
1PASS
|
|
|
0.13333334
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplayjalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplay
|
1PASS
|
|
|
0.13333334
|
jalview.analysis.scoremodels.ScoreMatrixTest.testGetMatrixjalview.analysis.scoremodels.ScoreMatrixTest.testGetMatrix
|
1PASS
|
|
|
0.13333334
|
jalview.gui.AlignFrameTest.testHideFeatureColumnsjalview.gui.AlignFrameTest.testHideFeatureColumns
|
1PASS
|
|
|
0.13333334
|
jalview.io.FeaturesFileTest.testPrintJalviewFormat_withFiltersjalview.io.FeaturesFileTest.testPrintJalviewFormat_withFilters
|
1PASS
|
|
|
0.13333334
|
jalview.analysis.scoremodels.ScoreMatrixTest.testGetMatrixIndexjalview.analysis.scoremodels.ScoreMatrixTest.testGetMatrixIndex
|
1PASS
|
|
|
0.13333334
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforViews
|
1PASS
|
|
|
0.13333334
|
jalview.util.MapListTest.testCoalesceRanges_withOverlapjalview.util.MapListTest.testCoalesceRanges_withOverlap
|
1PASS
|
|
|
0.13333334
|
jalview.io.FeaturesFileTest.testPrintJalviewFormatjalview.io.FeaturesFileTest.testPrintJalviewFormat
|
1PASS
|
|
|
0.13333334
|
jalview.schemes.ColourSchemesTest.testRegisterColourSchemejalview.schemes.ColourSchemesTest.testRegisterColourScheme
|
1PASS
|
|
|
0.13333334
|
jalview.gui.AlignViewportTest.testSetGetHasSearchResultsjalview.gui.AlignViewportTest.testSetGetHasSearchResults
|
1PASS
|
|
|
0.13333334
|
jalview.io.FeaturesFileTest.testPrintGffFormat_withFiltersjalview.io.FeaturesFileTest.testPrintGffFormat_withFilters
|
1PASS
|
|
|
0.13333334
|
jalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlightjalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlight
|
1PASS
|
|
|
0.13333334
|
jalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumnsjalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumns
|
1PASS
|
|
|
0.13333334
|
jalview.structures.models.AAStructureBindingModelTest.testBuildColoursMapjalview.structures.models.AAStructureBindingModelTest.testBuildColoursMap
|
1PASS
|
|
|
0.13333334
|
jalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNonejalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNone
|
1PASS
|
|
|
0.13333334
|
jalview.gui.AlignViewportTest.testShowOrDontShowOccupancyjalview.gui.AlignViewportTest.testShowOrDontShowOccupancy
|
1PASS
|
|
|
0.13333334
|
jalview.renderer.seqfeatures.FeatureRendererTest.testGetColourjalview.renderer.seqfeatures.FeatureRendererTest.testGetColour
|
1PASS
|
|