| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| UIinfo | 9 | 24 | 23 | 0.686274568.6% |
|
Class UIinfo |
Line # 9 |
24 |
23 |
0.686274568.6% |
|---|---|---|---|---|
| UIinfo(String,String,String,String,String) UIinfo(String,String,String,String,String) | 1313 | 5.05 | 5.05 | 0.6923077 0.692307769.2% |
| getServiceType() : String getServiceType() : String | 2626 | 1.01 | 1.01 | 1.0 1.0100% |
| setServiceType(String) : void setServiceType(String) : void | 3131 | 1.01 | 1.01 | 1.0 1.0100% |
| getAction() : String getAction() : String | 3939 | 1.01 | 1.01 | 1.0 1.0100% |
| setAction(String) : void setAction(String) : void | 4444 | 1.01 | 1.01 | 0.0 0.00% |
| getName() : String getName() : String | 5454 | 1.01 | 1.01 | 1.0 1.0100% |
| setName(String) : void setName(String) : void | 5959 | 1.01 | 1.01 | 0.0 0.00% |
| getDescription() : String getDescription() : String | 6969 | 1.01 | 1.01 | 1.0 1.0100% |
| setDescription(String) : void setDescription(String) : void | 7474 | 1.01 | 1.01 | 0.0 0.00% |
| equals(Object) : boolean equals(Object) : boolean | 7979 | 4.04 | 3.03 | 0.6666667 0.666666766.7% |
| getActionText() : String getActionText() : String | 108108 | 1.01 | 1.01 | 1.0 1.0100% |
| getHostURL() : String getHostURL() : String | 121121 | 1.01 | 1.01 | 1.0 1.0100% |
| getParamStore() : ParamDatastoreI getParamStore() : ParamDatastoreI | 126126 | 1.01 | 1.01 | 0.0 0.00% |
| hasParameters() : boolean hasParameters() : boolean | 137137 | 1.01 | 1.01 | 0.0 0.00% |
| setDocumentationUrl(String) : void setDocumentationUrl(String) : void | 150150 | 1.01 | 1.01 | 1.0 1.0100% |
| hasDocumentationUrl() : boolean hasDocumentationUrl() : boolean | 155155 | 1.01 | 1.01 | 1.0 1.0100% |
| getDocumentationUrl() : String getDocumentationUrl() : String | 160160 | 1.01 | 1.01 | 1.0 1.0100% |
|
0.6862745
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.6862745
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.6862745
|
jalview.bin.CommandsTest.headlessOrGuiImageOutputTestjalview.bin.CommandsTest.headlessOrGuiImageOutputTest | 1PASS | ||
|
0.6862745
|
jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice | 1PASS | ||
|
0.6862745
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.6862745
|
jalview.gui.QuitHandlerTest.testUnsavedChangesjalview.gui.QuitHandlerTest.testUnsavedChanges | 1PASS | ||
|
0.6862745
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.64705884
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.64705884
|
jalview.gui.QuitHandlerTest.testSavedProjectChangesjalview.gui.QuitHandlerTest.testSavedProjectChanges | 1PASS | ||
|
0.64705884
|
jalview.io.FeaturesFileTest.testPrintJalviewFormatjalview.io.FeaturesFileTest.testPrintJalviewFormat | 1PASS | ||
|
0.64705884
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.64705884
|
jalview.io.FeaturesFileTest.testParsejalview.io.FeaturesFileTest.testParse | 1PASS | ||
|
0.64705884
|
jalview.gui.AlignViewportTest.testSetGetHasSearchResultsjalview.gui.AlignViewportTest.testSetGetHasSearchResults | 1PASS | ||
|
0.64705884
|
jalview.gui.QuitHandlerTest.testWaitForSaveQuitjalview.gui.QuitHandlerTest.testWaitForSaveQuit | 1PASS | ||
|
0.64705884
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.buildThreeDBQueryTestjalview.gui.structurechooser.StructureChooserQuerySourceTest.buildThreeDBQueryTest | 1PASS | ||
|
0.64705884
|
jalview.gui.QuitHandlerTest.testForceQuitjalview.gui.QuitHandlerTest.testForceQuit | 1PASS | ||
|
0.64705884
|
jalview.io.EmblFlatFileTest.testParsejalview.io.EmblFlatFileTest.testParse | 1PASS | ||
|
0.64705884
|
jalview.io.FeaturesFileTest.testParse_mixedJalviewGffjalview.io.FeaturesFileTest.testParse_mixedJalviewGff | 1PASS | ||
|
0.64705884
|
jalview.gui.AlignViewportTest.testSetGlobalColourSchemejalview.gui.AlignViewportTest.testSetGlobalColourScheme | 1PASS | ||
|
0.64705884
|
jalview.io.FeaturesFileTest.testParse_pureGff3jalview.io.FeaturesFileTest.testParse_pureGff3 | 1PASS | ||
|
0.64705884
|
jalview.gui.QuitHandlerTest.testSavedAlignmentChangesjalview.gui.QuitHandlerTest.testSavedAlignmentChanges | 1PASS | ||
|
0.64705884
|
jalview.gui.AlignViewportTest.testUpdateConservation_qualityOnlyjalview.gui.AlignViewportTest.testUpdateConservation_qualityOnly | 1PASS | ||
|
0.64705884
|
jalview.gui.AlignViewportTest.testShowOrDontShowOccupancyjalview.gui.AlignViewportTest.testShowOrDontShowOccupancy | 1PASS | ||
|
0.64705884
|
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRowsjalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRows | 1PASS | ||
|
0.64705884
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.64705884
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.64705884
|
jalview.gui.AlignViewportTest.testSetSelectionGroupjalview.gui.AlignViewportTest.testSetSelectionGroup | 1PASS | ||
|
0.64705884
|
jalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNonejalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNone | 1PASS | ||
|
0.64705884
|
jalview.gui.PopupMenuTest.testBuildLinkMenujalview.gui.PopupMenuTest.testBuildLinkMenu | 1PASS | ||
|
0.64705884
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.60784316
|
jalview.gui.DesktopTests.testInternalCopyPastejalview.gui.DesktopTests.testInternalCopyPaste | 1PASS | ||
|
0.54901963
|
jalview.bin.CommandsTest2.do_network_structureOpeningArgsTestjalview.bin.CommandsTest2.do_network_structureOpeningArgsTest | 1PASS | ||
|
0.54901963
|
jalview.gui.AlignViewportTest.testDeregisterMapping_onCloseViewjalview.gui.AlignViewportTest.testDeregisterMapping_onCloseView | 1PASS | ||
|
0.5294118
|
jalview.ws.rest.RestClientTest.testGetRestClientjalview.ws.rest.RestClientTest.testGetRestClient | 1PASS | ||
|
0.50980395
|
jalview.gui.PopupMenuTest.testHideInsertionsjalview.gui.PopupMenuTest.testHideInsertions | 1PASS | ||
|
0.50980395
|
jalview.gui.AlignFrameTest.testNewView_dsRefPreservedjalview.gui.AlignFrameTest.testNewView_dsRefPreserved | 1PASS | ||
|
0.50980395
|
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRowsjalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRows | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.43137255
|
jalview.gui.SeqPanelTest.testFindColumn_and_FindAlignmentColumn_wrappedjalview.gui.SeqPanelTest.testFindColumn_and_FindAlignmentColumn_wrapped | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.43137255
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.43137255
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.43137255
|
jalview.bin.HiDPISettingTest1.testHiDPISettingInitjalview.bin.HiDPISettingTest1.testHiDPISettingInit | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.43137255
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.43137255
|
jalview.gui.StructureChooserTest.fetchStructuresInfoMockedTestjalview.gui.StructureChooserTest.fetchStructuresInfoMockedTest | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.43137255
|
jalview.io.RNAMLfileTest.testRnamlToStockholmIOjalview.io.RNAMLfileTest.testRnamlToStockholmIO | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.43137255
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.43137255
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.4117647
|
jalview.io.JSONFileTest.testGrpParsed_colourNonejalview.io.JSONFileTest.testGrpParsed_colourNone | 1PASS | ||
|
0.4117647
|
jalview.io.FeaturesFileTest.testPrintGffFormat_withFiltersjalview.io.FeaturesFileTest.testPrintGffFormat_withFilters | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest2.do_network_structureOpeningArgsTestjalview.bin.CommandsTest2.do_network_structureOpeningArgsTest | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_noSelectionGroupjalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_noSelectionGroup | 1PASS | ||
|
0.39215687
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_annotationsjalview.gui.SeqPanelTest.testFindMousePosition_wrapped_annotations | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.39215687
|
jalview.io.FeaturesFileTest.testPrintJalviewFormat_withFiltersjalview.io.FeaturesFileTest.testPrintJalviewFormat_withFilters | 1PASS | ||
|
0.39215687
|
jalview.gui.ScalePanelTest.testSelectColumns_withHiddenjalview.gui.ScalePanelTest.testSelectColumns_withHidden | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationChooserTest.testBuildActionButtonsPaneljalview.gui.AnnotationChooserTest.testBuildActionButtonsPanel | 1PASS | ||
|
0.39215687
|
jalview.gui.AssociatePDBFileTest.testAssociatePDBFilejalview.gui.AssociatePDBFileTest.testAssociatePDBFile | 1PASS | ||
|
0.39215687
|
jalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePositionjalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePosition | 1PASS | ||
|
0.39215687
|
jalview.gui.AlignViewportTest.testDeregisterMapping_withNoReferencejalview.gui.AlignViewportTest.testDeregisterMapping_withNoReference | 1PASS | ||
|
0.39215687
|
jalview.gui.StructureChooserTest.populateFilterComboBoxTestjalview.gui.StructureChooserTest.populateFilterComboBoxTest | 1PASS | ||
|
0.39215687
|
jalview.schemes.ColourSchemesTest.testRegisterColourSchemejalview.schemes.ColourSchemesTest.testRegisterColourScheme | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.39215687
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.39215687
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scaleAbovejalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scaleAbove | 1PASS | ||
|
0.39215687
|
jalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGaps | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.39215687
|
jalview.io.WindowsFileLoadAndSaveTest.loadAndSaveAlignmentjalview.io.WindowsFileLoadAndSaveTest.loadAndSaveAlignment | 1PASS | ||
|
0.39215687
|
jalview.io.TCoffeeScoreFileTest.testHeightAndWidthWithResidueNumbersjalview.io.TCoffeeScoreFileTest.testHeightAndWidthWithResidueNumbers | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.39215687
|
jalview.gui.AlignmentPanelTest.testSetOverviewTitlejalview.gui.AlignmentPanelTest.testSetOverviewTitle | 1PASS | ||
|
0.39215687
|
jalview.io.StockholmFileTest.stockholmFileRnaSSSpaceCharsjalview.io.StockholmFileTest.stockholmFileRnaSSSpaceChars | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
|
0.39215687
|
jalview.gui.AppVarnaTest.testReplaceOddGapsjalview.gui.AppVarnaTest.testReplaceOddGaps | 1PASS | ||
|
0.39215687
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsqjalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsq | 1PASS | ||
|
0.39215687
|
jalview.gui.AlignViewportTest.testGetConsensusSeqjalview.gui.AlignViewportTest.testGetConsensusSeq | 1PASS | ||
|
0.39215687
|
jalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumnsjalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumns | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.39215687
|
jalview.io.JalviewFileViewTest.testGetImageIconjalview.io.JalviewFileViewTest.testGetImageIcon | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationChooserTest.testDeselectType_hideForSelectedjalview.gui.AnnotationChooserTest.testDeselectType_hideForSelected | 1PASS | ||
|
0.39215687
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.39215687
|
jalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignmentjalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignment | 1PASS | ||
|
0.39215687
|
jalview.schemes.HmmerLocalBackgroundTest.testFindColourjalview.schemes.HmmerLocalBackgroundTest.testFindColour | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationChooserTest.testDeselectType_showForSelectedjalview.gui.AnnotationChooserTest.testDeselectType_showForSelected | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationChooserTest.testIsInActionScope_selectedScopejalview.gui.AnnotationChooserTest.testIsInActionScope_selectedScope | 1PASS | ||
|
0.39215687
|
jalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessagejalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessage | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationChooserTest.testResetOriginalStatejalview.gui.AnnotationChooserTest.testResetOriginalState | 1PASS | ||
|
0.39215687
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_withSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_withSelectionGroup | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.39215687
|
jalview.gui.AlignViewportTest.testDeregisterMapping_withReferencejalview.gui.AlignViewportTest.testDeregisterMapping_withReference | 1PASS | ||
|
0.39215687
|
jalview.gui.PopupMenuTest.testAddFeatureDetailsjalview.gui.PopupMenuTest.testAddFeatureDetails | 1PASS | ||
|
0.39215687
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.39215687
|
jalview.io.StockholmFileTest.testAnnotationEquivalencejalview.io.StockholmFileTest.testAnnotationEquivalence | 1PASS | ||
|
0.39215687
|
jalview.gui.AlignFrameTest.testColourThresholdActionsjalview.gui.AlignFrameTest.testColourThresholdActions | 1PASS | ||
|
0.39215687
|
jalview.io.StockholmFileTest.rfamFileIOjalview.io.StockholmFileTest.rfamFileIO | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.39215687
|
jalview.io.RNAMLfileTest.testRnamlSeqImportjalview.io.RNAMLfileTest.testRnamlSeqImport | 1PASS | ||
|
0.39215687
|
jalview.io.StockholmFileTest.pfamFileDataExtractionjalview.io.StockholmFileTest.pfamFileDataExtraction | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationLabelsTest.testDrawLabelsjalview.gui.AnnotationLabelsTest.testDrawLabels | 1PASS | ||
|
0.39215687
|
jalview.schemes.ColourSchemesTest.testGetColourSchemejalview.schemes.ColourSchemesTest.testGetColourScheme | 1PASS | ||
|
0.39215687
|
jalview.gui.AlignFrameTest.testChangeColour_background_groupsAndThresholdsjalview.gui.AlignFrameTest.testChangeColour_background_groupsAndThresholds | 1PASS | ||
|
0.39215687
|
jalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequencejalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequence | 1PASS | ||
|
0.39215687
|
jalview.io.StockholmFileTest.pfamFileIOjalview.io.StockholmFileTest.pfamFileIO | 1PASS | ||
|
0.39215687
|
jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_noAnnotationsjalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_noAnnotations | 1PASS | ||
|
0.39215687
|
jalview.io.TCoffeeScoreFileTest.testWrongFilejalview.io.TCoffeeScoreFileTest.testWrongFile | 1PASS | ||
|
0.39215687
|
jalview.schemes.HmmerGlobalBackgroundTest.testFindColourjalview.schemes.HmmerGlobalBackgroundTest.testFindColour | 1PASS | ||
|
0.39215687
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_noAnnotationsjalview.gui.SeqPanelTest.testFindMousePosition_wrapped_noAnnotations | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.39215687
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_aaindex_extraDataLinesjalview.io.ScoreMatrixFileTest.testParseMatrix_aaindex_extraDataLines | 1PASS | ||
|
0.39215687
|
jalview.gui.HelpTest.checkHelpTargetsjalview.gui.HelpTest.checkHelpTargets | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.39215687
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroup | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.39215687
|
jalview.ext.jmol.JmolParserTest.testAlignmentLoaderjalview.ext.jmol.JmolParserTest.testAlignmentLoader | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationChooserTest.testSelectType_hideForSelectedjalview.gui.AnnotationChooserTest.testSelectType_hideForSelected | 1PASS | ||
|
0.39215687
|
jalview.io.TCoffeeScoreFileTest.testGetAsArrayjalview.io.TCoffeeScoreFileTest.testGetAsArray | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.39215687
|
jalview.gui.AlignFrameTest.testNewView_colourThresholdsjalview.gui.AlignFrameTest.testNewView_colourThresholds | 1PASS | ||
|
0.39215687
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrandjalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrand | 1PASS | ||
|
0.39215687
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_aaIndexBlosum80jalview.io.ScoreMatrixFileTest.testParseMatrix_aaIndexBlosum80 | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationChooserTest.testSelectType_showForAlljalview.gui.AnnotationChooserTest.testSelectType_showForAll | 1PASS | ||
|
0.39215687
|
jalview.io.vcf.VCFLoaderTest.testDoLoadjalview.io.vcf.VCFLoaderTest.testDoLoad | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.39215687
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_forAlignFramejalview.gui.ColourMenuHelperTest.testAddMenuItems_forAlignFrame | 1PASS | ||
|
0.39215687
|
jalview.io.cache.JvCacheableInputBoxTest.updateCacheTestjalview.io.cache.JvCacheableInputBoxTest.updateCacheTest | 1PASS | ||
|
0.39215687
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.39215687
|
jalview.gui.StructureChooserTest.displayTDBQueryTestjalview.gui.StructureChooserTest.displayTDBQueryTest | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationColumnChooserTest.testResetjalview.gui.AnnotationColumnChooserTest.testReset | 1PASS | ||
|
0.39215687
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scales_longSequencejalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scales_longSequence | 1PASS | ||
|
0.39215687
|
jalview.gui.AlignmentPanelTest.testSetOverviewTitle_automaticOverviewjalview.gui.AlignmentPanelTest.testSetOverviewTitle_automaticOverview | 1PASS | ||
|
0.39215687
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationChooserTest.testSelectType_hideForAlljalview.gui.AnnotationChooserTest.testSelectType_hideForAll | 1PASS | ||
|
0.39215687
|
jalview.gui.QuitHandlerTest.testNoGUIUnsavedChangesjalview.gui.QuitHandlerTest.testNoGUIUnsavedChanges | 1PASS | ||
|
0.39215687
|
jalview.gui.FeatureSettingsTest.testSaveLoadjalview.gui.FeatureSettingsTest.testSaveLoad | 1PASS | ||
|
0.39215687
|
jalview.io.StockholmFileTest.stockholmFileRnaSSAlphaCharsjalview.io.StockholmFileTest.stockholmFileRnaSSAlphaChars | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
|
0.39215687
|
jalview.io.StockholmFileTest.secondaryStructureForRNASequencejalview.io.StockholmFileTest.secondaryStructureForRNASequence | 1PASS | ||
|
0.39215687
|
jalview.gui.AnnotationChooserTest.testIsInActionScope_unselectedScopejalview.gui.AnnotationChooserTest.testIsInActionScope_unselectedScope | 1PASS | ||
|
0.3529412
|
jalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGaps | 1PASS | ||
|
0.3529412
|
jalview.schemes.ClustalxColourSchemeTest.testFindColourjalview.schemes.ClustalxColourSchemeTest.testFindColour | 1PASS | ||
|
0.3529412
|
jalview.gui.AlignViewportTest.testGetSelectionAsNewSequences_withContactMatricesjalview.gui.AlignViewportTest.testGetSelectionAsNewSequences_withContactMatrices | 1PASS | ||
|
0.3529412
|
jalview.gui.SeqPanelTest.testFindColumn_unwrappedjalview.gui.SeqPanelTest.testFindColumn_unwrapped | 1PASS | ||
|
0.3529412
|
jalview.gui.AlignmentPanelTest.testUpdateLayout_endResjalview.gui.AlignmentPanelTest.testUpdateLayout_endRes | 1PASS | ||
|
0.3529412
|
jalview.io.NewickFileTests.testTreeIOjalview.io.NewickFileTests.testTreeIO | 1PASS | ||
|
0.33333334
|
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRowsjalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRows | 1PASS | ||
|
0.33333334
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.testUpSeqsjalview.gui.structurechooser.StructureChooserQuerySourceTest.testUpSeqs | 1PASS | ||
|
0.3137255
|
jalview.analysis.AverageDistanceEngineTest.testUPGMAEnginejalview.analysis.AverageDistanceEngineTest.testUPGMAEngine | 1PASS | ||
|
0.3137255
|
jalview.io.BackupFilesTest.backupsEnabledSingleFileBackupTestjalview.io.BackupFilesTest.backupsEnabledSingleFileBackupTest | 1PASS | ||
|
0.3137255
|
jalview.io.BSMLFileTest.testParse_BSMLjalview.io.BSMLFileTest.testParse_BSML | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverview | 1PASS | ||
|
0.3137255
|
jalview.schemes.ColourSchemePropertyTest.testGetColourSchemejalview.schemes.ColourSchemePropertyTest.testGetColourScheme | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.3137255
|
jalview.io.NewickFileTests.testTreeIOjalview.io.NewickFileTests.testTreeIO | 1PASS | ||
|
0.3137255
|
jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation | 1PASS | ||
|
0.3137255
|
jalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeaturesjalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeatures | 1PASS | ||
|
0.3137255
|
jalview.util.FormatTest.testFormat_scientificjalview.util.FormatTest.testFormat_scientific | 1PASS | ||
|
0.3137255
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.3137255
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.3137255
|
jalview.structure.StructureSelectionManagerTest.testSaveAnnotationProviderjalview.structure.StructureSelectionManagerTest.testSaveAnnotationProvider | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocusjalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocus | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFiltersjalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFilters | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.3137255
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntry | 1PASS | ||
|
0.3137255
|
jalview.urls.UrlLinkTableModelTest.testInitialisationjalview.urls.UrlLinkTableModelTest.testInitialisation | 1PASS | ||
|
0.3137255
|
jalview.io.StockholmFileTest.dbrefOutputjalview.io.StockholmFileTest.dbrefOutput | 1PASS | ||
|
0.3137255
|
jalview.util.ColorUtilsTest.testBleachColourjalview.util.ColorUtilsTest.testBleachColour | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverHmmProfilejalview.project.Jalview2xmlTests.testStoreAndRecoverHmmProfile | 1PASS | ||
|
0.3137255
|
jalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMol | 1PASS | ||
|
0.3137255
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.3137255
|
jalview.gui.FeatureSettingsTest.testGetColorTooltipjalview.gui.FeatureSettingsTest.testGetColorTooltip | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.3137255
|
jalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMol | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testColourByAnnotScoresjalview.project.Jalview2xmlTests.testColourByAnnotScores | 1PASS | ||
|
0.3137255
|
jalview.util.LaunchUtilsTest.testJarVersionComparisonsjalview.util.LaunchUtilsTest.testJarVersionComparisons | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverOverview | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.testDirnamesAndBasenamesjalview.util.FileUtilsTest.testDirnamesAndBasenames | 1PASS | ||
|
0.3137255
|
jalview.datamodel.AllColsIteratorTest.testOneElementjalview.datamodel.AllColsIteratorTest.testOneElement | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings | 1PASS | ||
|
0.3137255
|
jalview.workers.AlignCaclManager2Test.testCancelOneShotWorkerjalview.workers.AlignCaclManager2Test.testCancelOneShotWorker | 1PASS | ||
|
0.3137255
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiBadDelimiterjalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiBadDelimiter | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testRNAStructureRecoveryjalview.project.Jalview2xmlTests.testRNAStructureRecovery | 1PASS | ||
|
0.3137255
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumnjalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumn | 1PASS | ||
|
0.3137255
|
jalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotationjalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotation | 1PASS | ||
|
0.3137255
|
jalview.util.ComparisonTest.testIsNucleotideAmbiguityjalview.util.ComparisonTest.testIsNucleotideAmbiguity | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforViews | 1PASS | ||
|
0.3137255
|
jalview.gui.ScalePanelTest.testBuildPopupMenujalview.gui.ScalePanelTest.testBuildPopupMenu | 1PASS | ||
|
0.3137255
|
jalview.structure.AtomSpecModelTest.testGetRangesjalview.structure.AtomSpecModelTest.testGetRanges | 1PASS | ||
|
0.3137255
|
jalview.structure.StructureSelectionManagerTest.testSaveAnnotationProviderjalview.structure.StructureSelectionManagerTest.testSaveAnnotationProvider | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.3137255
|
jalview.schemes.ResidueColourSchemeTest.testIsApplicableTo_dynamicColourSchemejalview.schemes.ResidueColourSchemeTest.testIsApplicableTo_dynamicColourScheme | 1PASS | ||
|
0.3137255
|
jalview.gui.JvSwingUtilsTest.testGetScrollValueForProportionjalview.gui.JvSwingUtilsTest.testGetScrollValueForProportion | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjectsjalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjects | 1PASS | ||
|
0.3137255
|
jalview.io.PhylipFileTests.testSequentialIOjalview.io.PhylipFileTests.testSequentialIO | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqsjalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqs | 1PASS | ||
|
0.3137255
|
jalview.util.LaunchUtilsTest.testJarVersionComparisonsjalview.util.LaunchUtilsTest.testJarVersionComparisons | 1PASS | ||
|
0.3137255
|
jalview.workers.AlignCaclManager2Test.testIsWorkingWithAnnotationjalview.workers.AlignCaclManager2Test.testIsWorkingWithAnnotation | 1PASS | ||
|
0.3137255
|
jalview.schemes.ColourSchemesTest.testGetColourSchemesjalview.schemes.ColourSchemesTest.testGetColourSchemes | 1PASS | ||
|
0.3137255
|
jalview.workers.AlignCaclManager2Test.testRestartCancelsWorkersjalview.workers.AlignCaclManager2Test.testRestartCancelsWorkers | 1PASS | ||
|
0.3137255
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumnsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumns | 1PASS | ||
|
0.3137255
|
jalview.gui.StructureChooserTest.sanitizeSeqNameTestjalview.gui.StructureChooserTest.sanitizeSeqNameTest | 1PASS | ||
|
0.3137255
|
jalview.io.PhylipFileTests.testInterleavedDataExtractionjalview.io.PhylipFileTests.testInterleavedDataExtraction | 1PASS | ||
|
0.3137255
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.3137255
|
jalview.io.BackupFilesTest.backupsEnabledRollMaxTestjalview.io.BackupFilesTest.backupsEnabledRollMaxTest | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColoursjalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColours | 1PASS | ||
|
0.3137255
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.3137255
|
jalview.renderer.seqfeatures.FeatureRendererTest.testIsVisiblejalview.renderer.seqfeatures.FeatureRendererTest.testIsVisible | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsPropertiesjalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsProperties | 1PASS | ||
|
0.3137255
|
jalview.util.DnaUtilsTest.testParseLocationjalview.util.DnaUtilsTest.testParseLocation | 1PASS | ||
|
0.3137255
|
jalview.io.BackupFilesTest.backupsEnabledNoRollMaxTestjalview.io.BackupFilesTest.backupsEnabledNoRollMaxTest | 1PASS | ||
|
0.3137255
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.buildPDBQueryTestjalview.gui.structurechooser.StructureChooserQuerySourceTest.buildPDBQueryTest | 1PASS | ||
|
0.3137255
|
jalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_compareNullDescriptionToEmptyjalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_compareNullDescriptionToEmpty | 1PASS | ||
|
0.3137255
|
jalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlightjalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlight | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testTCoffeeScoresjalview.project.Jalview2xmlTests.testTCoffeeScores | 1PASS | ||
|
0.3137255
|
jalview.gui.QuitHandlerTest.testInstantQuitjalview.gui.QuitHandlerTest.testInstantQuit | 1PASS | ||
|
0.3137255
|
jalview.io.StockholmFileTest.descriptionLineOutputjalview.io.StockholmFileTest.descriptionLineOutput | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.gatherViewsHerejalview.project.Jalview2xmlTests.gatherViewsHere | 1PASS | ||
|
0.3137255
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.3137255
|
jalview.renderer.seqfeatures.FeatureRendererTest.testGetColourjalview.renderer.seqfeatures.FeatureRendererTest.testGetColour | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testPAEsaveRestorejalview.project.Jalview2xmlTests.testPAEsaveRestore | 1PASS | ||
|
0.3137255
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResiduejalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResidue | 1PASS | ||
|
0.3137255
|
jalview.gui.AlignmentPanelTest.testPrintWrappedAlignmentjalview.gui.AlignmentPanelTest.testPrintWrappedAlignment | 1PASS | ||
|
0.3137255
|
jalview.util.ArrayUtilsTest.testReverseIntArrayjalview.util.ArrayUtilsTest.testReverseIntArray | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.3137255
|
jalview.io.TCoffeeScoreFileTest.testGetAsListjalview.io.TCoffeeScoreFileTest.testGetAsList | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.3137255
|
jalview.io.JalviewExportPropertiesTests.testImportExportPeriodGapsjalview.io.JalviewExportPropertiesTests.testImportExportPeriodGaps | 1PASS | ||
|
0.3137255
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModeljalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel | 1PASS | ||
|
0.3137255
|
jalview.schemes.ResiduePropertiesTest.testGetCanonicalAminoAcidjalview.schemes.ResiduePropertiesTest.testGetCanonicalAminoAcid | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testPcaViewAssociationjalview.project.Jalview2xmlTests.testPcaViewAssociation | 1PASS | ||
|
0.3137255
|
jalview.util.Log4jTest.testLog4jjalview.util.Log4jTest.testLog4j | 1PASS | ||
|
0.3137255
|
jalview.util.LaunchUtilsTest.testJarVersionComparisonsjalview.util.LaunchUtilsTest.testJarVersionComparisons | 1PASS | ||
|
0.3137255
|
jalview.bin.CommandsTest2.do_network_structureOpeningArgsTestjalview.bin.CommandsTest2.do_network_structureOpeningArgsTest | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.3137255
|
jalview.workers.AlignCaclManager2Test.testIsWorkingjalview.workers.AlignCaclManager2Test.testIsWorking | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews | 1PASS | ||
|
0.3137255
|
jalview.io.AnnotationFileIOTest.testProviderRestorejalview.io.AnnotationFileIOTest.testProviderRestore | 1PASS | ||
|
0.3137255
|
jalview.schemes.FeatureColourTest.testGetDescriptionjalview.schemes.FeatureColourTest.testGetDescription | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testCopyViewSettingsjalview.project.Jalview2xmlTests.testCopyViewSettings | 1PASS | ||
|
0.3137255
|
jalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_nullNotMatchEmptyjalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_nullNotMatchEmpty | 1PASS | ||
|
0.3137255
|
jalview.schemes.ResiduePropertiesTest.testPhysicoChemicalPropertiesjalview.schemes.ResiduePropertiesTest.testPhysicoChemicalProperties | 1PASS | ||
|
0.3137255
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.3137255
|
jalview.io.PhylipFileTests.testInterleavedIOjalview.io.PhylipFileTests.testInterleavedIO | 1PASS | ||
|
0.3137255
|
jalview.gui.PaintRefresherTest.testGetAssociatedPanelsjalview.gui.PaintRefresherTest.testGetAssociatedPanels | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholdsjalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholds | 1PASS | ||
|
0.3137255
|
jalview.workers.AlignCaclManager2Test.testStartOneShotWorkerjalview.workers.AlignCaclManager2Test.testStartOneShotWorker | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.3137255
|
jalview.renderer.ScaleRendererTest.testCalculateMarksjalview.renderer.ScaleRendererTest.testCalculateMarks | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTreejalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTree | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.3137255
|
jalview.util.ImageMakerTest.testParseScaleWidthHeightStringsjalview.util.ImageMakerTest.testParseScaleWidthHeightStrings | 1PASS | ||
|
0.3137255
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeaturejalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeature | 1PASS | ||
|
0.3137255
|
jalview.workers.AlignCaclManager2Test.restartOneShotWorkerjalview.workers.AlignCaclManager2Test.restartOneShotWorker | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMade | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.3137255
|
jalview.schemes.FeatureColourTest.testGetColor_colourByAttributeTextjalview.schemes.FeatureColourTest.testGetColor_colourByAttributeText | 1PASS | ||
|
0.3137255
|
jalview.structures.models.AAStructureBindingModelTest.testBuildColoursMapjalview.structures.models.AAStructureBindingModelTest.testBuildColoursMap | 1PASS | ||
|
0.3137255
|
jalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTestjalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTest | 1PASS | ||
|
0.3137255
|
jalview.schemes.FeatureColourTest.testCopyConstructorjalview.schemes.FeatureColourTest.testCopyConstructor | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforManyViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforManyViews | 1PASS | ||
|
0.3137255
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances | 1PASS | ||
|
0.3137255
|
jalview.workers.AlignCaclManager2Test.testRestartCompletedWorkersjalview.workers.AlignCaclManager2Test.testRestartCompletedWorkers | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.viewRefPdbAnnotationjalview.project.Jalview2xmlTests.viewRefPdbAnnotation | 1PASS | ||
|
0.3137255
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.3137255
|
jalview.workers.AlignCaclManager2Test.testRestartDisabledWorkerjalview.workers.AlignCaclManager2Test.testRestartDisabledWorker | 1PASS | ||
|
0.3137255
|
jalview.testutils.AnnotationsMatcherTest.testMatchesSafely_matchingAnnotationsjalview.testutils.AnnotationsMatcherTest.testMatchesSafely_matchingAnnotations | 1PASS | ||
|
0.3137255
|
jalview.workers.AlignCaclManager2Test.testCancelWorkerjalview.workers.AlignCaclManager2Test.testCancelWorker | 1PASS | ||
|
0.3137255
|
jalview.io.PhylipFileTests.testSequentialDataExtractionjalview.io.PhylipFileTests.testSequentialDataExtraction | 1PASS | ||
|
0.3137255
|
jalview.workers.AlignCaclManager2Test.testStartRegisteredWorkerjalview.workers.AlignCaclManager2Test.testStartRegisteredWorker | 1PASS | ||
|
0.3137255
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.3137255
|
jalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeightjalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeight | 1PASS | ||
|
0.3137255
|
jalview.io.AnnotationExporterTest.testAnnotationExportAsCSVjalview.io.AnnotationExporterTest.testAnnotationExportAsCSV | 1PASS | ||
|
0.3137255
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.3137255
|
jalview.gui.ScalePanelTest.testPreventNegativeStartColumnjalview.gui.ScalePanelTest.testPreventNegativeStartColumn | 1PASS | ||
|
0.27450982
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.27450982
|
jalview.schemes.FeatureColourTest.testGetColor_aboveBelowThresholdjalview.schemes.FeatureColourTest.testGetColor_aboveBelowThreshold | 1PASS | ||
|
0.27450982
|
jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_withAnnotationsjalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_withAnnotations | 1PASS | ||
|
0.23529412
|
jalview.gui.AlignViewportTest.testHideRevealSequencesjalview.gui.AlignViewportTest.testHideRevealSequences | 1PASS | ||
|
0.15686275
|
jalview.io.TCoffeeScoreFileTest.testReadHeaderjalview.io.TCoffeeScoreFileTest.testReadHeader | 1PASS | ||
|
0.15686275
|
jalview.gui.SeqPanelTest.testGetEditStatusMessagejalview.gui.SeqPanelTest.testGetEditStatusMessage | 1PASS | ||
|
0.15686275
|
jalview.gui.AnnotationChooserTest.testDeselectType_hideForAlljalview.gui.AnnotationChooserTest.testDeselectType_hideForAll | 1PASS | ||
|
0.15686275
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiBadFloatjalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiBadFloat | 1PASS | ||
|
0.15686275
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiMixedDelimitersjalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiMixedDelimiters | 1PASS | ||
|
0.15686275
|
jalview.io.SequenceAnnotationReportTest.testCreateSequenceAnnotationReport_withEllipsisjalview.io.SequenceAnnotationReportTest.testCreateSequenceAnnotationReport_withEllipsis | 1PASS | ||
|
0.15686275
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.15686275
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiHeaderRepeatedjalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiHeaderRepeated | 1PASS | ||
|
0.15686275
|
jalview.gui.SequenceRendererTest.testGetResidueColour_WithGroupjalview.gui.SequenceRendererTest.testGetResidueColour_WithGroup | 1PASS | ||
|
0.15686275
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiBadGuideCharacterjalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiBadGuideCharacter | 1PASS | ||
|
0.15686275
|
jalview.io.TCoffeeScoreFileTest.testReadBlockjalview.io.TCoffeeScoreFileTest.testReadBlock | 1PASS | ||
|
0.15686275
|
jalview.gui.AnnotationLabelsTest.testDrawLabelsjalview.gui.AnnotationLabelsTest.testDrawLabels | 1PASS | ||
|
0.15686275
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiTooManyRowsjalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiTooManyRows | 1PASS | ||
|
0.15686275
|
jalview.gui.JvSwingUtilsTest.testWrapTooltip_shortTextjalview.gui.JvSwingUtilsTest.testWrapTooltip_shortText | 1PASS | ||
|
0.15686275
|
jalview.io.TCoffeeScoreFileTest.testHeightAndWidthjalview.io.TCoffeeScoreFileTest.testHeightAndWidth | 1PASS | ||
|
0.15686275
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_aaindex_tooManyRowsjalview.io.ScoreMatrixFileTest.testParseMatrix_aaindex_tooManyRows | 1PASS | ||
|
0.15686275
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_aaindex_rowColMismatchjalview.io.ScoreMatrixFileTest.testParseMatrix_aaindex_rowColMismatch | 1PASS | ||
|
0.11764706
|
jalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenu_noReferenceAnnotationsjalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenu_noReferenceAnnotations | 1PASS | ||
|
0.078431375
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiTooManyColumnsjalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiTooManyColumns | 1PASS | ||
|
0.078431375
|
jalview.io.NewickFileTests.testTreeIOjalview.io.NewickFileTests.testTreeIO | 1PASS | ||
|
0.078431375
|
jalview.io.PfamFormatInputTest.testPfamFormatNoLimitsjalview.io.PfamFormatInputTest.testPfamFormatNoLimits | 1PASS | ||
|
0.078431375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.078431375
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.078431375
|
jalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_matchingAnnotationsjalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_matchingAnnotations | 1PASS | ||
|
0.078431375
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.078431375
|
jalview.gui.AlignFrameTest.testHideFeatureColumnsjalview.gui.AlignFrameTest.testHideFeatureColumns | 1PASS |
| 1 | package jalview.ws.api; | ||||||
| 2 | |||||||
| 3 | import jalview.ws.params.ParamDatastoreI; | ||||||
| 4 | |||||||
| 5 | /** | ||||||
| 6 | * Service UI Info { Action, Specific Name of Service, Brief Description } | ||||||
| 7 | */ | ||||||
| 8 | |||||||
|
|||||||
| 9 | public class UIinfo | ||||||
| 10 | { | ||||||
| 11 | private String ServiceType; | ||||||
| 12 | |||||||
|
|||||||
| 13 | 8746 | public UIinfo(String serviceType, String action, String name,... |
|||||
| 14 | String description, String hosturl) | ||||||
| 15 | { | ||||||
| 16 | 8746 | this.setServiceType(serviceType == null ? "" : serviceType); | |||||
| 17 | 8746 | this.Action = action == null ? "" : action; | |||||
| 18 | 8746 | this.description = description == null ? "" : description; | |||||
| 19 | 8746 | this.Name = name == null ? "" : name; | |||||
| 20 | 8746 | this.hostURL = hosturl; | |||||
| 21 | } | ||||||
| 22 | |||||||
| 23 | /** | ||||||
| 24 | * The type of analysis the service performs | ||||||
| 25 | */ | ||||||
|
|||||||
| 26 | 5567 | public String getServiceType()... |
|||||
| 27 | { | ||||||
| 28 | 5567 | return ServiceType; | |||||
| 29 | } | ||||||
| 30 | |||||||
|
|||||||
| 31 | 8746 | public void setServiceType(String serviceType)... |
|||||
| 32 | { | ||||||
| 33 | 8746 | ServiceType = serviceType; | |||||
| 34 | } | ||||||
| 35 | |||||||
| 36 | /** | ||||||
| 37 | * The action when the service performs the analysis | ||||||
| 38 | */ | ||||||
|
|||||||
| 39 | 111285 | public String getAction()... |
|||||
| 40 | { | ||||||
| 41 | 111285 | return Action; | |||||
| 42 | } | ||||||
| 43 | |||||||
|
|||||||
| 44 | 0 | public void setAction(String action)... |
|||||
| 45 | { | ||||||
| 46 | 0 | Action = action; | |||||
| 47 | } | ||||||
| 48 | |||||||
| 49 | /** | ||||||
| 50 | * name shown to user | ||||||
| 51 | * | ||||||
| 52 | * @return | ||||||
| 53 | */ | ||||||
|
|||||||
| 54 | 1294545 | public String getName()... |
|||||
| 55 | { | ||||||
| 56 | 1294545 | return Name; | |||||
| 57 | } | ||||||
| 58 | |||||||
|
|||||||
| 59 | 0 | public void setName(String name)... |
|||||
| 60 | { | ||||||
| 61 | 0 | Name = name; | |||||
| 62 | } | ||||||
| 63 | |||||||
| 64 | /** | ||||||
| 65 | * Detailed description (may include references, URLs, html,etc) | ||||||
| 66 | * | ||||||
| 67 | * @return | ||||||
| 68 | */ | ||||||
|
|||||||
| 69 | 3758 | public String getDescription()... |
|||||
| 70 | { | ||||||
| 71 | 3758 | return description; | |||||
| 72 | } | ||||||
| 73 | |||||||
|
|||||||
| 74 | 0 | public void setDescription(String description)... |
|||||
| 75 | { | ||||||
| 76 | 0 | this.description = description; | |||||
| 77 | } | ||||||
| 78 | |||||||
|
|||||||
| 79 | 1842 | @Override... |
|||||
| 80 | public boolean equals(Object object) | ||||||
| 81 | { | ||||||
| 82 | 1842 | if (object == null || !(object instanceof UIinfo)) | |||||
| 83 | { | ||||||
| 84 | 0 | return false; | |||||
| 85 | } | ||||||
| 86 | 1842 | UIinfo other = (UIinfo) object; | |||||
| 87 | |||||||
| 88 | 1842 | return (ServiceType == null && other.getServiceType() == null | |||||
| 89 | || ServiceType != null && other.getServiceType() != null | ||||||
| 90 | && ServiceType.equals(other.getServiceType())) | ||||||
| 91 | && (hostURL == null && other.getHostURL() == null | ||||||
| 92 | || hostURL != null && other.getHostURL() != null | ||||||
| 93 | && hostURL.equals(other.getHostURL())) | ||||||
| 94 | && (Name == null && other.getName() == null | ||||||
| 95 | || Name != null && other.getName() != null | ||||||
| 96 | && Name.equals(other.getName())) | ||||||
| 97 | && (Action == null && other.getAction() == null | ||||||
| 98 | || Action != null && other.getAction() != null | ||||||
| 99 | && Action.equals(other.getAction())) | ||||||
| 100 | && (description == null && other.getDescription() == null | ||||||
| 101 | || description != null && other.getDescription() != null | ||||||
| 102 | && description.equals(other.getDescription())); | ||||||
| 103 | } | ||||||
| 104 | |||||||
| 105 | /** | ||||||
| 106 | * @return short description of what the service will do | ||||||
| 107 | */ | ||||||
|
|||||||
| 108 | 44182 | public String getActionText()... |
|||||
| 109 | { | ||||||
| 110 | 44182 | return getAction() + " with " + getName(); | |||||
| 111 | } | ||||||
| 112 | |||||||
| 113 | String Action; | ||||||
| 114 | |||||||
| 115 | String Name; | ||||||
| 116 | |||||||
| 117 | String description; | ||||||
| 118 | |||||||
| 119 | String hostURL; | ||||||
| 120 | |||||||
|
|||||||
| 121 | 42882 | public String getHostURL()... |
|||||
| 122 | { | ||||||
| 123 | 42882 | return hostURL; | |||||
| 124 | } | ||||||
| 125 | |||||||
|
|||||||
| 126 | 0 | public ParamDatastoreI getParamStore()... |
|||||
| 127 | { | ||||||
| 128 | // TODO Auto-generated method stub | ||||||
| 129 | 0 | return null; | |||||
| 130 | } | ||||||
| 131 | |||||||
| 132 | /** | ||||||
| 133 | * | ||||||
| 134 | * @return true if the service has parameters (ie is instance of | ||||||
| 135 | * jalview.ws.api.ServiceWithParameters) | ||||||
| 136 | */ | ||||||
|
|||||||
| 137 | 0 | public boolean hasParameters()... |
|||||
| 138 | { | ||||||
| 139 | // TODO Auto-generated method stub | ||||||
| 140 | 0 | return false; | |||||
| 141 | } | ||||||
| 142 | |||||||
| 143 | private String docUrl = null; | ||||||
| 144 | |||||||
| 145 | /** | ||||||
| 146 | * set the URL that will be offered to show documentation for the service | ||||||
| 147 | * | ||||||
| 148 | * @param url | ||||||
| 149 | */ | ||||||
|
|||||||
| 150 | 479 | public void setDocumentationUrl(String url)... |
|||||
| 151 | { | ||||||
| 152 | 479 | docUrl = url; | |||||
| 153 | } | ||||||
| 154 | |||||||
|
|||||||
| 155 | 2780 | public boolean hasDocumentationUrl()... |
|||||
| 156 | { | ||||||
| 157 | 2780 | return docUrl != null && docUrl.length() > 7; | |||||
| 158 | } | ||||||
| 159 | |||||||
|
|||||||
| 160 | 5560 | public String getDocumentationUrl()... |
|||||
| 161 | { | ||||||
| 162 | 5560 | return docUrl; | |||||
| 163 | } | ||||||
| 164 | } |
