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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
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1.0100%
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jalview.datamodel.SecondaryStructureCount.SymbolCounts
jalview.datamodel.SecondaryStructureCount.SymbolCounts
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.util.imagemaker.BitmapImageSizing
jalview.util.imagemaker.BitmapImageSizing
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0.8709677587.1%
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jalview.datamodel.Profiles
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jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
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jalview.workers.ConsensusThread
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0.880%
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jalview.analysis.Conservation
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0.782608778.3%
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jalview.gui.ItemsRenderer
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0.777777877.8%
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jalview.util.LinkedIdentityHashSet
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jalview.workers.SecondaryStructureConsensusThread
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0.75471775.5%
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jalview.workers.AlignCalcManager2.WorkerManager
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jalview.schemes.ZappoColourScheme
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jalview.schemes.NucleotideColourScheme
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0.7575%
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jalview.workers.AlignCalcManager2.SimpleWorkerManager
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jalview.gui.FeatureRenderer
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
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jalview.datamodel.Profile
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jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
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jalview.workers.ConservationThread
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0.666666766.7%
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jalview.ws.SequenceFetcher
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jalview.math.AlignmentDimension
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jalview.util.ImageMaker.TYPE
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jalview.bin.Cache.VersionChecker
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jalview.ws.sifts.SiftsSettings
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jalview.io.BioJsHTMLOutput
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jalview.urls.IdOrgSettings
jalview.urls.IdOrgSettings
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
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jalview.viewmodel.ViewportProperties
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jalview.bin.argparser.ArgParser
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0.550%
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jalview.bin.argparser.SubVals
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jalview.ws2.gui.WebServicesMenuManager
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jalview.gui.ColourMenuHelper
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jalview.util.QuickSort.IntComparator
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jalview.datamodel.HiddenCursorPosition
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jalview.bin.argparser.ArgValue
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.4134615441.3%
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org.json.JSONTokener
org.json.JSONTokener
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0.4132841241.3%
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jalview.ext.so.SequenceOntology
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0.412541.2%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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jalview.bin.Cache
jalview.bin.Cache
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.io.gff.SequenceOntologyFactory
jalview.io.gff.SequenceOntologyFactory
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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0.440%
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0.440%
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jalview.schemes.BuriedColourScheme
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0.440%
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jalview.datamodel.ResidueCount
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0.390243939%
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jalview.log.JalviewAppender
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0.388888938.9%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.387195138.7%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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0.3853503238.5%
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jalview.util.ImageMaker
jalview.util.ImageMaker
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jalview.util.HttpUtils
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jalview.io.AlignFile
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jalview.bin.argparser.ArgValues
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jalview.bin.argparser.ArgValuesMap
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jalview.io.FastaFile
jalview.io.FastaFile
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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jalview.bin.Commands
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0.308353830.8%
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jalview.gui.AlignViewport
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0.3002309530%
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
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0.330%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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0.2945544429.5%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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0.2914837629.1%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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jalview.renderer.ResidueColourFinder
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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jalview.ws2.actions.BaseAction
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jalview.schemes.JalviewColourScheme
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jalview.gui.JvSwingUtils
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jalview.bin.Jalview
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jalview.io.IdentifyFile
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jalview.util.FileUtils
jalview.util.FileUtils
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jalview.renderer.ResidueShader
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jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.io.FileParse
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jalview.ws.rest.params.Alignment
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jalview.gui.IdCanvas
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jalview.bin.BuildDetails
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jalview.bin.Console
jalview.bin.Console
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jalview.ws.rest.InputType
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jalview.bin.JalviewTaskbar
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0.220%
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jalview.datamodel.SecondaryStructureCount
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0.1914062519.1%
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jalview.gui.AnnotationLabels
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jalview.schemes.IdColourScheme
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jalview.datamodel.Alignment
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jalview.util.UserAgent
jalview.util.UserAgent
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jalview.util.QuickSort
jalview.util.QuickSort
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jalview.log.JLogger
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jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.PaintRefresher
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jalview.util.Format
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jalview.gui.AlignFrame
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jalview.io.AppletFormatAdapter
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jalview.util.StringUtils
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jalview.io.FormatAdapter
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jalview.datamodel.Annotation
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jalview.gui.Desktop
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jalview.gui.PromptUserConfig
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jalview.log.JLoggerLog4j
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jalview.util.Platform
jalview.util.Platform
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jalview.ws.WSClient
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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jalview.io.FileFormat
jalview.io.FileFormat
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
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0.0939597349.4%
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jalview.util.JSONUtils
jalview.util.JSONUtils
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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org.json.JSONObject
org.json.JSONObject
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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jalview.analysis.scoremodels.ScoreModels
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jalview.schemes.RNAHelicesColour
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jalview.datamodel.AlignmentAnnotation
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
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jalview.schemes.HmmerLocalBackground
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jalview.util.ChannelProperties
jalview.util.ChannelProperties
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.0698151967%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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jalview.schemes.PIDColourScheme
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jalview.util.LaunchUtils
jalview.util.LaunchUtils
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0.066339076.6%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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jalview.bin.argparser.Arg
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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jalview.datamodel.ColumnSelection.IntList
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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jalview.workers.InformationThread
jalview.workers.InformationThread
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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org.json.JSONArray
org.json.JSONArray
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
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jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
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0.055%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.044642864.5%
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jalview.schemes.HMMMatchScoreColourScheme
jalview.schemes.HMMMatchScoreColourScheme
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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jalview.schemes.HmmerColourScheme
jalview.schemes.HmmerColourScheme
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0.038461543.8%
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org.json.simple.JSONObject
org.json.simple.JSONObject
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
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0.0310559013.1%
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jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
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0.0296610173%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.027397262.7%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.0188679251.9%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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0.0188434051.9%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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0.0170268511.7%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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0.0169491531.7%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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jalview.hmmer.HmmerCommand
jalview.hmmer.HmmerCommand
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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0.0135593221.4%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.0127388541.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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0.0112359551.1%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.0103092781%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
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0.0081632650.8%
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org.json.simple.JSONArray
org.json.simple.JSONArray
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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0.007547170.8%
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
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