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com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
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1.0100%
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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
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1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
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1.0100%
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jalview.project.Jalview2XML.JvAnnotRow
jalview.project.Jalview2XML.JvAnnotRow
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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1.0100%
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jalview.gui.ProgressPanel
jalview.gui.ProgressPanel
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0.975609897.6%
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jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.869565287%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
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0.866666786.7%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.858695685.9%
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com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
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0.8461538684.6%
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jalview.datamodel.VisibleRowsCollection
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0.833333383.3%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.823529482.4%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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0.880%
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com.stevesoft.pat.SubMark
com.stevesoft.pat.SubMark
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0.880%
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jalview.datamodel.VisibleColsCollection
jalview.datamodel.VisibleColsCollection
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0.880%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.7857142778.6%
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jalview.workers.SecondaryStructureConsensusThread
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0.75471775.5%
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jalview.workers.AlignCalcManager2.WorkerManager
jalview.workers.AlignCalcManager2.WorkerManager
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0.7575%
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jalview.viewmodel.OverviewDimensions
jalview.viewmodel.OverviewDimensions
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0.7464788674.6%
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jalview.xml.binding.jalview.SequenceSet
jalview.xml.binding.jalview.SequenceSet
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0.736842173.7%
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jalview.datamodel.RangeElementsIterator
jalview.datamodel.RangeElementsIterator
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0.7187571.9%
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jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
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0.7142857371.4%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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0.7142857371.4%
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jalview.datamodel.Profile
jalview.datamodel.Profile
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0.70491870.5%
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jalview.datamodel.VisibleRowsIterator
jalview.datamodel.VisibleRowsIterator
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0.770%
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jalview.renderer.OverviewRenderer
jalview.renderer.OverviewRenderer
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0.6746987767.5%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
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0.666666766.7%
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jalview.renderer.OverviewResColourFinder
jalview.renderer.OverviewResColourFinder
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0.648648664.9%
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
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0.6470588464.7%
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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0.6285714562.9%
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com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
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0.62562.5%
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com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
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0.62562.5%
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
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0.6162790761.6%
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jalview.analysis.SequenceIdMatcher.SeqIdName
jalview.analysis.SequenceIdMatcher.SeqIdName
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0.605263260.5%
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jalview.xml.binding.jalview.JalviewModel
jalview.xml.binding.jalview.JalviewModel
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0.5961538659.6%
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jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
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0.594202959.4%
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jalview.gui.OverviewCanvas
jalview.gui.OverviewCanvas
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0.586206958.6%
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jalview.jbgui.GTreePanel
jalview.jbgui.GTreePanel
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0.5789473757.9%
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jalview.xml.binding.jalview.JalviewModel.JSeq
jalview.xml.binding.jalview.JalviewModel.JSeq
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0.576923157.7%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.571428657.1%
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jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
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0.567556.7%
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jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
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0.5656%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
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0.5428571754.3%
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com.stevesoft.pat.Boundary
com.stevesoft.pat.Boundary
|
0.518518551.9%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.550%
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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0.550%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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jalview.xml.binding.jalview.AnnotationElement
jalview.xml.binding.jalview.AnnotationElement
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0.550%
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jalview.xml.binding.jalview.SequenceType
jalview.xml.binding.jalview.SequenceType
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0.550%
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jalview.xml.binding.jalview.JalviewModel.JGroup
jalview.xml.binding.jalview.JalviewModel.JGroup
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0.550%
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jalview.xml.binding.jalview.Sequence
jalview.xml.binding.jalview.Sequence
|
0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
|
0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
|
0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
|
0.550%
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jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
|
0.550%
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jalview.xml.binding.jalview.Annotation
jalview.xml.binding.jalview.Annotation
|
0.4824561548.2%
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jalview.xml.binding.jalview.JalviewModel.Viewport
jalview.xml.binding.jalview.JalviewModel.Viewport
|
0.4806451548.1%
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.4772727247.7%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.4761904847.6%
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jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
|
0.4579439245.8%
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.453703745.4%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.4230769342.3%
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jalview.analysis.SequenceIdMatcher
jalview.analysis.SequenceIdMatcher
|
0.412280741.2%
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jalview.gui.OverviewPanel
jalview.gui.OverviewPanel
|
0.411764741.2%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
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jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
|
0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
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jalview.datamodel.BinaryNode
jalview.datamodel.BinaryNode
|
0.393939439.4%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
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0.37537.5%
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jalview.io.NewickFile
jalview.io.NewickFile
|
0.3709016437.1%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.3645901736.5%
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jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
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0.3630136836.3%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.3588850235.9%
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jalview.util.Comparison
jalview.util.Comparison
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0.350393735%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.3458401334.6%
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jalview.gui.TreePanel.TreeLoader
jalview.gui.TreePanel.TreeLoader
|
0.3404255234%
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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0.340277834%
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jalview.xml.binding.jalview.VAMSAS
jalview.xml.binding.jalview.VAMSAS
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0.3333333433.3%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.329268332.9%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.3278145832.8%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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0.3274802632.7%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.3241816232.4%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.3221649532.2%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.318706731.9%
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
|
0.313725531.4%
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jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.313725531.4%
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.3072727330.7%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.302631630.3%
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
|
0.330%
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.294871829.5%
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jalview.analysis.TreeModel
jalview.analysis.TreeModel
|
0.2945736329.5%
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jalview.io.FileLoader
jalview.io.FileLoader
|
0.2926829229.3%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2827586228.3%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.275747527.6%
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jalview.xml.binding.jalview.JalviewModel.Tree
jalview.xml.binding.jalview.JalviewModel.Tree
|
0.2692307826.9%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.2525%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
|
0.2525%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.2525%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
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jalview.io.FileFormats
jalview.io.FileFormats
|
0.2424%
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jalview.datamodel.VisibleContigsIterator
jalview.datamodel.VisibleContigsIterator
|
0.2340425623.4%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.2274509822.7%
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jalview.io.FileParse
jalview.io.FileParse
|
0.213296421.3%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
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jalview.viewmodel.OverviewDimensionsHideHidden
jalview.viewmodel.OverviewDimensionsHideHidden
|
0.2054794620.5%
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.220%
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jalview.project.Jalview2XML
jalview.project.Jalview2XML
|
0.1961023219.6%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.1819803718.2%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.1794871817.9%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.1791497917.9%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.1771653617.7%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
|
0.1739130517.4%
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jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
|
0.1686746916.9%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.1642651316.4%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
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0.1598639516%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.1594372815.9%
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.159420315.9%
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jalview.util.StringUtils
jalview.util.StringUtils
|
0.1581920815.8%
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jalview.datamodel.SequenceNode
jalview.datamodel.SequenceNode
|
0.1538461615.4%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.151315815.1%
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jalview.util.Format
jalview.util.Format
|
0.1490683314.9%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1475409914.8%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.1466666614.7%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1445312514.5%
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jalview.log.JLogger
jalview.log.JLogger
|
0.1428571514.3%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.1428571514.3%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.1365046513.7%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.1333333413.3%
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jalview.schemes.HmmerGlobalBackground
jalview.schemes.HmmerGlobalBackground
|
0.1333333413.3%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.1252348112.5%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.11428571511.4%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.1111111111.1%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.1028806610.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.1020920510.2%
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jalview.gui.TreePanel
jalview.gui.TreePanel
|
0.10116731410.1%
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jalview.bin.Console
jalview.bin.Console
|
0.09905669.9%
|
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jalview.ws.WSClient
jalview.ws.WSClient
|
0.098039229.8%
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jalview.gui.Desktop
jalview.gui.Desktop
|
0.096432559.6%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
|
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.0943396249.4%
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jalview.util.Platform
jalview.util.Platform
|
0.08823538.8%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
|
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.0833333368.3%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.082191788.2%
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.081632658.2%
|
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jalview.util.QuickSort
jalview.util.QuickSort
|
0.0809061458.1%
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jalview.schemes.HmmerLocalBackground
jalview.schemes.HmmerLocalBackground
|
0.076923087.7%
|
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jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0762711847.6%
|
|
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.068965526.9%
|
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.067430036.7%
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jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.066666676.7%
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.063655036.4%
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jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.0635359146.4%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
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jalview.bin.Cache
jalview.bin.Cache
|
0.056910575.7%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0560747655.6%
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jalview.workers.InformationThread
jalview.workers.InformationThread
|
0.0555555565.6%
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jalview.io.FileFormat
jalview.io.FileFormat
|
0.0551724145.5%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
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jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.055%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.04952835%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.04566214.6%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.044642864.5%
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jalview.schemes.HMMMatchScoreColourScheme
jalview.schemes.HMMMatchScoreColourScheme
|
0.042553194.3%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.0408163264.1%
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jalview.schemes.HmmerColourScheme
jalview.schemes.HmmerColourScheme
|
0.038461543.8%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
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jalview.gui.TreeCanvas
jalview.gui.TreeCanvas
|
0.0292968752.9%
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.0268456382.7%
|
|
|
jalview.util.FileUtils
jalview.util.FileUtils
|
0.0267857152.7%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0256410262.6%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0170268511.7%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0169491531.7%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.015325671.5%
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jalview.hmmer.HmmerCommand
jalview.hmmer.HmmerCommand
|
0.0141509441.4%
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jalview.bin.Jalview
jalview.bin.Jalview
|
0.01374292651.4%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0135593221.4%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0129954521.3%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.0128205131.3%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.01275510251.3%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0112359551.1%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0103092781%
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jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.010101011%
|
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.00312989040.3%
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|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
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