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jalview.ws2.actions.hmmer.PhmmerAction.Builder
jalview.ws2.actions.hmmer.PhmmerAction.Builder
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1.0100%
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jalview.ws.params.simple.StringParameter.Builder
jalview.ws.params.simple.StringParameter.Builder
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1.0100%
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com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
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1.0100%
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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
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1.0100%
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jalview.ws2.actions.alignment.AlignmentAction.Builder
jalview.ws2.actions.alignment.AlignmentAction.Builder
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1.0100%
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jalview.ws2.actions.secstructpred.SecStructPredAction.Builder
jalview.ws2.actions.secstructpred.SecStructPredAction.Builder
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1.0100%
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jalview.ws2.api.WebService.Builder
jalview.ws2.api.WebService.Builder
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1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
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1.0100%
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jalview.structures.models.AAStructureBindingModel.SuperposeData
jalview.structures.models.AAStructureBindingModel.SuperposeData
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.ws2.actions.annotation.AnnotationAction.Builder
jalview.ws2.actions.annotation.AnnotationAction.Builder
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1.0100%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.structure.AtomSpecModel
jalview.structure.AtomSpecModel
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0.8809523688.1%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.8719806787.2%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
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0.866666786.7%
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jalview.ws.params.simple.BooleanOption.Builder
jalview.ws.params.simple.BooleanOption.Builder
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0.8571428785.7%
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
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0.85234985.2%
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jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
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0.8461538684.6%
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com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
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0.8461538684.6%
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mc_view.Residue
mc_view.Residue
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0.8461538684.6%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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0.880%
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jalview.ws.params.simple.Option.Builder
jalview.ws.params.simple.Option.Builder
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0.880%
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
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0.880%
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jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
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0.773584977.4%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
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0.771428677.1%
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jalview.workers.AlignCalcManager2.WorkerManager
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0.7575%
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jalview.structures.models.SequenceStructureBindingModel
jalview.structures.models.SequenceStructureBindingModel
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.7575%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
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0.738095273.8%
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jalview.datamodel.Profile
jalview.datamodel.Profile
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0.7377049373.8%
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jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
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0.7142857371.4%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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0.7142857371.4%
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
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0.7142857371.4%
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jalview.jbgui.GStructureViewer
jalview.jbgui.GStructureViewer
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0.7065217570.7%
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jalview.ws2.client.slivka.SlivkaParamStoreFactory
jalview.ws2.client.slivka.SlivkaParamStoreFactory
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0.7028985670.3%
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jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
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0.687568.8%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
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0.666666766.7%
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jalview.ws.params.simple.DoubleParameter.Builder
jalview.ws.params.simple.DoubleParameter.Builder
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0.655172465.5%
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jalview.ws.params.simple.IntegerParameter.Builder
jalview.ws.params.simple.IntegerParameter.Builder
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0.655172465.5%
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
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0.6470588464.7%
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jalview.schemes.FeatureSettingsAdapter
jalview.schemes.FeatureSettingsAdapter
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0.62562.5%
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jalview.ws2.actions.BaseAction.Builder
jalview.ws2.actions.BaseAction.Builder
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0.6190476461.9%
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
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0.612244961.2%
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jalview.ws2.actions.alignment.AlignmentAction
jalview.ws2.actions.alignment.AlignmentAction
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0.660%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.595238159.5%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.595238159.5%
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jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
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0.594202959.4%
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jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
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0.567556.7%
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jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
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0.565217456.5%
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jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
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0.5633074656.3%
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jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
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0.5656%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
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0.551020455.1%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.524390252.4%
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
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0.523255852.3%
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jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
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0.522648152.3%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.519230851.9%
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jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
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0.5128205451.3%
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com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
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0.550%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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mc_view.Bond
mc_view.Bond
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0.550%
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com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
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0.550%
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jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
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0.550%
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jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
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0.4953271249.5%
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mc_view.PDBChain
mc_view.PDBChain
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0.4947089949.5%
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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0.485714348.6%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.4761904847.6%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.466101746.6%
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
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0.4655870546.6%
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jalview.io.BioJsHTMLOutput
jalview.io.BioJsHTMLOutput
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0.46446.4%
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jalview.io.StructureFile
jalview.io.StructureFile
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0.460465146%
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jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
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0.4579439245.8%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.4551724245.5%
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jalview.ws2.actions.annotation.AnnotationAction
jalview.ws2.actions.annotation.AnnotationAction
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0.4444444544.4%
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
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0.437543.8%
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jalview.ws2.actions.secstructpred.SecStructPredAction
jalview.ws2.actions.secstructpred.SecStructPredAction
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0.4285714342.9%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.4272517342.7%
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
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0.424528342.5%
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jalview.ws.params.simple.BooleanOption
jalview.ws.params.simple.BooleanOption
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0.4242424442.4%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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0.4183673641.8%
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org.json.JSONTokener
org.json.JSONTokener
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0.4132841241.3%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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0.440%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
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0.3910256339.1%
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jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
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0.3939%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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0.3853503238.5%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
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0.37537.5%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.3720930237.2%
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jalview.gui.AppJmol
jalview.gui.AppJmol
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0.3717472337.2%
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jalview.util.Format
jalview.util.Format
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0.3685300436.9%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.3684210536.8%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.3676844836.8%
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jalview.util.Comparison
jalview.util.Comparison
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0.3661417436.6%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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0.364354736.4%
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jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
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0.3630136836.3%
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jalview.datamodel.SequenceFeature
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0.35251835.3%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.3484688434.8%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.3476821234.8%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.344594634.5%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.344202934.4%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.3414634234.1%
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jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
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0.3318903433.2%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.3295269333%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.3289473732.9%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.3248407532.5%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.3221649532.2%
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
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0.313725531.4%
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jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
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0.313725531.4%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
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0.312531.2%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.309495930.9%
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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0.3055555530.6%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.3054393230.5%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
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0.2957746429.6%
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jalview.structure.StructureMapping
jalview.structure.StructureMapping
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0.2953367829.5%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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0.2945544429.5%
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jalview.ws2.actions.hmmer.PhmmerAction
jalview.ws2.actions.hmmer.PhmmerAction
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0.2941176629.4%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.2918032729.2%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
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0.2909090829.1%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.285714328.6%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2827586228.3%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.282051328.2%
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jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
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0.282051328.2%
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mc_view.Atom
mc_view.Atom
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0.282051328.2%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.2766570727.7%
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jalview.gui.AppJmol.RenderPanel
jalview.gui.AppJmol.RenderPanel
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0.2702702627%
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
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0.2692307826.9%
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
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0.2660406826.6%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.2608695626.1%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.2567975825.7%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.2549019825.5%
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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0.250909125.1%
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org.json.JSONObject.Null
org.json.JSONObject.Null
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0.2525%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.ext.jmol.JmolCommands
jalview.ext.jmol.JmolCommands
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0.2440944924.4%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.2338056723.4%
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jalview.ws.params.simple.Option
jalview.ws.params.simple.Option
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0.2333333323.3%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.structure.StructureCommandsBase
jalview.structure.StructureCommandsBase
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0.2317073223.2%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.2304687523%
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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0.2272727322.7%
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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0.22522.5%
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jalview.ws.params.simple.IntegerParameter
jalview.ws.params.simple.IntegerParameter
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0.2142857221.4%
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jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
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0.2142857221.4%
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jalview.io.FileParse
jalview.io.FileParse
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0.213296421.3%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.2070707120.7%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.200787420.1%
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jalview.ws.params.simple.DoubleParameter
jalview.ws.params.simple.DoubleParameter
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0.1956521719.6%
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jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
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0.1949152519.5%
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jalview.ws.params.simple.StringParameter
jalview.ws.params.simple.StringParameter
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0.190476219%
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jalview.ws.sifts.SiftsSettings
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jalview.datamodel.Alignment
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jalview.analysis.scoremodels.ScoreModels
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jalview.datamodel.SearchResults.Match
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jalview.schemes.TCoffeeColourScheme
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jalview.schemes.Blosum62ColourScheme
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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jalview.io.AppletFormatAdapter
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jalview.bin.Console
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jalview.log.JLogger
jalview.log.JLogger
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0.1648351716.5%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.1613236816.1%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.analysis.AnnotationSorter
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jalview.ws.rest.RestClient
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jalview.gui.Desktop.MyDesktopPane
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jalview.workers.AlignCalcWorker
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jalview.schemes.HmmerGlobalBackground
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jalview.schemes.PIDColourScheme
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0.1333333413.3%
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jalview.gui.StructureViewer
jalview.gui.StructureViewer
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0.1328903613.3%
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org.json.JSONObject
org.json.JSONObject
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0.1322549913.2%
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jalview.ws2.client.jpred4.JPred4WSClient
jalview.ws2.client.jpred4.JPred4WSClient
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0.1290322512.9%
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jalview.structure.AtomSpec
jalview.structure.AtomSpec
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0.1279069812.8%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.util.Platform
jalview.util.Platform
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0.1225490212.3%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.structure.StructureCommand
jalview.structure.StructureCommand
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0.1212%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.118346911.8%
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jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
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0.11428571511.4%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1111111111.1%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1111111111.1%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.1095890411%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.1028806610.3%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
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0.1027397310.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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org.json.JSONArray
org.json.JSONArray
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0.1010638310.1%
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
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0.098639469.9%
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jalview.ws.WSClient
jalview.ws.WSClient
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0.098039229.8%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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0.096774199.7%
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jalview.util.JSONUtils
jalview.util.JSONUtils
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0.090909099.1%
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jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
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0.090526319.1%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.090395489%
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jalview.ws2.client.slivka.SlivkaAlignmentWSClient
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
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0.086956528.7%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.086309528.6%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.0853658548.5%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.0848484868.5%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.082758628.3%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.081632658.2%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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0.081081088.1%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.08011058%
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jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
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0.076923087.7%
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jalview.schemes.HmmerLocalBackground
jalview.schemes.HmmerLocalBackground
|
0.076923087.7%
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jalview.schemes.HmmerColourScheme
jalview.schemes.HmmerColourScheme
|
0.076923087.7%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.074766357.5%
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
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0.0740740757.4%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.071906367.2%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.067264576.7%
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
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jalview.schemes.HMMMatchScoreColourScheme
jalview.schemes.HMMMatchScoreColourScheme
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0.063829796.4%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.063655036.4%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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0.061224496.1%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.workers.InformationThread
jalview.workers.InformationThread
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0.0555555565.6%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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0.0545808975.5%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0542452825.4%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
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0.0512820525.1%
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jalview.bin.Cache
jalview.bin.Cache
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0.05013555%
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jalview.ws2.client.slivka.SlivkaAnnotationWSClient
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
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0.055%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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0.045841524.6%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.04566214.6%
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jalview.util.MapList
jalview.util.MapList
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0.044%
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org.json.simple.JSONObject
org.json.simple.JSONObject
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0.037735853.8%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
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0.0310559013.1%
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jalview.ws2.client.slivka.SlivkaWSClient
jalview.ws2.client.slivka.SlivkaWSClient
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0.033%
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
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0.0289855082.9%
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jalview.util.FileUtils
jalview.util.FileUtils
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0.0267857152.7%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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0.0254237282.5%
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
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0.0216450232.2%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.017182131.7%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
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0.0156251.6%
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jalview.bin.Jalview
jalview.bin.Jalview
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0.0153597421.5%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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0.015325671.5%
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mc_view.PDBfile
mc_view.PDBfile
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0.0150375941.5%
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jalview.hmmer.HmmerCommand
jalview.hmmer.HmmerCommand
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0.0141509441.4%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0135593221.4%
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jalview.gui.JvOptionPane
jalview.gui.JvOptionPane
|
0.0115830121.2%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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0.0112359551.1%
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jalview.ws2.client.ebi.ParamStores
jalview.ws2.client.ebi.ParamStores
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0.0102040811%
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jalview.ws2.client.ebi.PhmmerWSClient
jalview.ws2.client.ebi.PhmmerWSClient
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0.0101522841%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
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org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
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0.00722021660.7%
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com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
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0.00278551530.3%
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jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
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0.00103039670.1%
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