|
jalview.ws.params.simple.StringParameter.Builder
jalview.ws.params.simple.StringParameter.Builder
|
1.0100%
|
|
|
jalview.ws2.actions.alignment.AlignmentAction.Builder
jalview.ws2.actions.alignment.AlignmentAction.Builder
|
1.0100%
|
|
|
jalview.ws2.api.WebService.Builder
jalview.ws2.api.WebService.Builder
|
1.0100%
|
|
|
jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
|
1.0100%
|
|
|
jalview.structure.StructureImportSettings.TFType
jalview.structure.StructureImportSettings.TFType
|
1.0100%
|
|
|
jalview.ws2.actions.annotation.AnnotationAction.Builder
jalview.ws2.actions.annotation.AnnotationAction.Builder
|
1.0100%
|
|
|
jalview.ws.params.simple.BooleanOption.Builder
jalview.ws.params.simple.BooleanOption.Builder
|
0.8571428785.7%
|
|
|
jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.85234985.2%
|
|
|
jalview.ws.params.simple.Option.Builder
jalview.ws.params.simple.Option.Builder
|
0.880%
|
|
|
jalview.ws2.api.WebService
jalview.ws2.api.WebService
|
0.880%
|
|
|
jalview.fts.core.FTSDataColumnPreferences
jalview.fts.core.FTSDataColumnPreferences
|
0.77966178%
|
|
|
jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
|
0.771428677.1%
|
|
|
jalview.fts.core.FTSRestRequest
jalview.fts.core.FTSRestRequest
|
0.741935574.2%
|
|
|
jalview.ws2.client.slivka.SlivkaParamStoreFactory
jalview.ws2.client.slivka.SlivkaParamStoreFactory
|
0.7028985670.3%
|
|
|
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
|
0.695652269.6%
|
|
|
jalview.ws.params.simple.DoubleParameter.Builder
jalview.ws.params.simple.DoubleParameter.Builder
|
0.655172465.5%
|
|
|
jalview.ws.params.simple.IntegerParameter.Builder
jalview.ws.params.simple.IntegerParameter.Builder
|
0.655172465.5%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.6470588464.7%
|
|
|
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
|
0.637563.7%
|
|
|
jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.62562.5%
|
|
|
jalview.ws2.actions.BaseAction.Builder
jalview.ws2.actions.BaseAction.Builder
|
0.6190476461.9%
|
|
|
jalview.fts.service.threedbeacons.TDB_FTSData
jalview.fts.service.threedbeacons.TDB_FTSData
|
0.6129032461.3%
|
|
|
jalview.ws2.actions.alignment.AlignmentAction
jalview.ws2.actions.alignment.AlignmentAction
|
0.660%
|
|
|
jalview.jbgui.FilterOption
jalview.jbgui.FilterOption
|
0.589743659%
|
|
|
jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
|
0.583333358.3%
|
|
|
jalview.fts.core.FTSRestResponse
jalview.fts.core.FTSRestResponse
|
0.527272752.7%
|
|
|
jalview.fts.service.pdb.PDBFTSRestClient
jalview.fts.service.pdb.PDBFTSRestClient
|
0.5244444652.4%
|
|
|
jalview.jbgui.GStructureChooser
jalview.jbgui.GStructureChooser
|
0.514851551.5%
|
|
|
jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.5142857451.4%
|
|
|
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
|
0.495750749.6%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.4711538647.1%
|
|
|
jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.4605263246.1%
|
|
|
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
|
0.4579439245.8%
|
|
|
jalview.ws2.actions.annotation.AnnotationAction
jalview.ws2.actions.annotation.AnnotationAction
|
0.4444444544.4%
|
|
|
jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.4313725543.1%
|
|
|
jalview.ws.params.simple.BooleanOption
jalview.ws.params.simple.BooleanOption
|
0.4242424442.4%
|
|
|
org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
|
0.4140127341.4%
|
|
|
org.json.JSONTokener
org.json.JSONTokener
|
0.4132841241.3%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.388888938.9%
|
|
|
jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.37537.5%
|
|
|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.37537.5%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.3571428735.7%
|
|
|
jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
|
0.3544973435.4%
|
|
|
jalview.jbgui.GStructureChooser.AssociateSeqPanel
jalview.jbgui.GStructureChooser.AssociateSeqPanel
|
0.352941235.3%
|
|
|
jalview.gui.structurechooser.StructureChooserQuerySource
jalview.gui.structurechooser.StructureChooserQuerySource
|
0.3466666634.7%
|
|
|
jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
|
0.3333333433.3%
|
|
|
jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
|
0.3333333433.3%
|
|
|
org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
|
0.3292079332.9%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.3269230732.7%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.3221649532.2%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
|
|
jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.2830188628.3%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.2827586228.3%
|
|
|
jalview.fts.core.FTSRestClient
jalview.fts.core.FTSRestClient
|
0.2779922827.8%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.2755905427.6%
|
|
|
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.2653061226.5%
|
|
|
org.json.JSONObject.Null
org.json.JSONObject.Null
|
0.2525%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
0.2352941223.5%
|
|
|
jalview.ws.params.simple.Option
jalview.ws.params.simple.Option
|
0.2333333323.3%
|
|
|
jalview.ws.params.simple.IntegerParameter
jalview.ws.params.simple.IntegerParameter
|
0.2142857221.4%
|
|
|
jalview.gui.StructureChooser.PDBEntryTableModel
jalview.gui.StructureChooser.PDBEntryTableModel
|
0.2105263221.1%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.2070707120.7%
|
|
|
jalview.gui.StructureChooser
jalview.gui.StructureChooser
|
0.2062430420.6%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.ws.params.simple.DoubleParameter
jalview.ws.params.simple.DoubleParameter
|
0.1956521719.6%
|
|
|
jalview.ws.params.simple.StringParameter
jalview.ws.params.simple.StringParameter
|
0.190476219%
|
|
|
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
|
0.1857142918.6%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.1466666614.7%
|
|
|
org.json.simple.JSONValue
org.json.simple.JSONValue
|
0.1460674114.6%
|
|
|
jalview.gui.structurechooser.TDBResultAnalyser
jalview.gui.structurechooser.TDBResultAnalyser
|
0.1460674114.6%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.1458333314.6%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.1428571514.3%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.1415094314.2%
|
|
|
org.json.JSONObject
org.json.JSONObject
|
0.1322549913.2%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.11428571511.4%
|
|
|
org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.1129032211.3%
|
|
|
jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.1111111111.1%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.10355987410.4%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
org.json.JSONArray
org.json.JSONArray
|
0.1010638310.1%
|
|
|
org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
|
0.096774199.7%
|
|
|
jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.09523819.5%
|
|
|
jalview.util.JSONUtils
jalview.util.JSONUtils
|
0.090909099.1%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.090395489%
|
|
|
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
|
0.086956528.7%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
|
|
|
jalview.gui.structurechooser.PDBStructureChooserQuerySource
jalview.gui.structurechooser.PDBStructureChooserQuerySource
|
0.076923087.7%
|
|
|
jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.068965526.9%
|
|
|
junit.extensions.PrivilegedAccessor
junit.extensions.PrivilegedAccessor
|
0.0669456056.7%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
junit.extensions.PA
junit.extensions.PA
|
0.0576923085.8%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
|
|
|
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
|
0.055%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.049609815%
|
|
|
jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
|
0.0429447854.3%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0416666684.2%
|
|
|
jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.041095894.1%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.0408163264.1%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0400751424%
|
|
|
jalview.ws.jws2.Jws2ClientFactory
jalview.ws.jws2.Jws2ClientFactory
|
0.044%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.037940383.8%
|
|
|
org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.0317991643.2%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.ws2.client.slivka.SlivkaWSClient
jalview.ws2.client.slivka.SlivkaWSClient
|
0.033%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0275862072.8%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0208333342.1%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.015325671.5%
|
|
|
jalview.gui.StructureViewer
jalview.gui.StructureViewer
|
0.0099667781%
|
|
|
jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0080840750.8%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.00178412130.2%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.00131147540.1%
|
|
|
jalview.project.Jalview2XML
jalview.project.Jalview2XML
|
0.00121802690.1%
|
|
