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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.workers.AlignCalcManager2.WorkerManager
jalview.workers.AlignCalcManager2.WorkerManager
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0.7575%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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0.7142857371.4%
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
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jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.6787439667.9%
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jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
|
0.6071428760.7%
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jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
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0.567556.7%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
|
0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
|
0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
|
0.550%
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jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
|
0.550%
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
|
0.550%
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jalview.util.MessageManager
jalview.util.MessageManager
|
0.4761904847.6%
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.4605263246.1%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
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0.4326530743.3%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.4322033843.2%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.4146341441.5%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.404761940.5%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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0.440%
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jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
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0.3921568739.2%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
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0.37537.5%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.3648648636.5%
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jalview.io.FastaFile
jalview.io.FastaFile
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0.3603603536%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.3586956635.9%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.3571428735.7%
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jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
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0.3544973435.4%
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jalview.util.Comparison
jalview.util.Comparison
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0.350393735%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.3333333433.3%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.3221649532.2%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.3013245230.1%
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
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0.330%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2896551829%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.2863741228.6%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.275261327.5%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.2737752227.4%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.2525%
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jalview.io.FileParse
jalview.io.FileParse
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0.2493074824.9%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.2465573724.7%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.2460401224.6%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.ws.WSClient
jalview.ws.WSClient
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0.2352941223.5%
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jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
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0.2285714322.9%
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jalview.gui.SeqPanel.MousePos
jalview.gui.SeqPanel.MousePos
|
0.2222222222.2%
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jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
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0.2123287621.2%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
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0.187518.8%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.1666666716.7%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.1466666614.7%
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jalview.log.JLogger
jalview.log.JLogger
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0.1428571514.3%
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jalview.schemes.HmmerGlobalBackground
jalview.schemes.HmmerGlobalBackground
|
0.1333333413.3%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.132812513.3%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.1320249713.2%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
|
0.1212%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.1176470611.8%
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jalview.util.StringUtils
jalview.util.StringUtils
|
0.1129943511.3%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1111111111.1%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.util.QuickSort
jalview.util.QuickSort
|
0.10355987410.4%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1005009410.1%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.0993788849.9%
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jalview.io.FileFormat
jalview.io.FileFormat
|
0.0965517249.7%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.093723859.4%
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jalview.bin.Console
jalview.bin.Console
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0.089622649%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.088888898.9%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.0853658548.5%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.0833333368.3%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.082191788.2%
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.081632658.2%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.080661848.1%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.076923087.7%
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jalview.schemes.HmmerLocalBackground
jalview.schemes.HmmerLocalBackground
|
0.076923087.7%
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.07547177.5%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.072368427.2%
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jalview.util.Platform
jalview.util.Platform
|
0.0710784357.1%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.070339987%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.068965526.9%
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jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.066666676.7%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.066666676.7%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.0657894766.6%
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jalview.gui.Desktop
jalview.gui.Desktop
|
0.064102576.4%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.063655036.4%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.062753046.3%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0617283966.2%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
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jalview.bin.Cache
jalview.bin.Cache
|
0.052845535.3%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.0512820525.1%
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jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.055%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0493827164.9%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.047619054.8%
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jalview.schemes.HMMMatchScoreColourScheme
jalview.schemes.HMMMatchScoreColourScheme
|
0.042553194.3%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
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jalview.ws.jws2.Jws2ClientFactory
jalview.ws.jws2.Jws2ClientFactory
|
0.044%
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jalview.schemes.HmmerColourScheme
jalview.schemes.HmmerColourScheme
|
0.038461543.8%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0373831763.7%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0365448523.7%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.035623413.6%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.035294123.5%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0352564123.5%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
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jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0296610173%
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.0268456382.7%
|
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jalview.util.FileUtils
jalview.util.FileUtils
|
0.0267857152.7%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.0252.5%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.0238095242.4%
|
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0238095242.4%
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jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.0193370171.9%
|
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jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
|
0.0188679251.9%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0188679251.9%
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jalview.workers.InformationThread
jalview.workers.InformationThread
|
0.0185185191.9%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0169491531.7%
|
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0144230771.4%
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jalview.hmmer.HmmerCommand
jalview.hmmer.HmmerCommand
|
0.0141509441.4%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0135593221.4%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.0128205131.3%
|
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.01275510251.3%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
|
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jalview.bin.Jalview
jalview.bin.Jalview
|
0.0121261111.2%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0112359551.1%
|
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0111329411.1%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.009842521%
|
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.00351185260.4%
|
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.00343642620.3%
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