Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
JalviewExportPropertiesTests	40	17	4	0	1.0100%	Show methods

Class JalviewExportPropertiesTests

Class JalviewExportPropertiesTests	Line # 40	Total Statements 17	Complexity 4	Uncovered Elements 0	TOTAL Coverage 1.0100%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	4343	2.02	1.01	0.00	1.0 1.0100%
setUpBeforeClass() : void   setUpBeforeClass() : void	5353	1.01	1.01	0.00	1.0 1.0100%
tearDownAfterClass() : void   tearDownAfterClass() : void	6363	1.01	1.01	0.00	1.0 1.0100%
testImportExportPeriodGaps() : void   testImportExportPeriodGaps() : void	7070	13.013	1.01	0.00	1.0 1.0100%

 

Contributing tests

Contributing tests

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	Test contribution	Test	Result	Actions
	0.6666667	jalview.io.JalviewExportPropertiesTests.testImportExportPeriodGapsjalview.io.JalviewExportPropertiesTests.testImportExportPeriodGaps	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.io;
22
23		import static org.testng.AssertJUnit.assertTrue;
24
25		import jalview.datamodel.SequenceGroup;
26		import jalview.gui.AlignFrame;
27		import jalview.gui.JvOptionPane;
28
29		import org.testng.annotations.AfterClass;
30		import org.testng.annotations.BeforeClass;
31		import org.testng.annotations.Test;
32
33		/**
34		* tests which verify that properties and preferences are correctly interpreted
35		* when exporting/importing data
36		*
37		* @author jprocter
38		*
39		*/
		100% Uncovered Elements: 0 (21) Complexity: 4 Complexity Density: 0.24
40		public class JalviewExportPropertiesTests
41		{
42
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
43	1	@BeforeClass(alwaysRun = true)...
44		public void setUpJvOptionPane()
45		{
46	1	JvOptionPane.setInteractiveMode(false);
47	1	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
48		}
49
50		/**
51		* @throws java.lang.Exception
52		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
53	1	@BeforeClass(alwaysRun = true)...
54		public static void setUpBeforeClass() throws Exception
55		{
56	1	jalview.bin.Jalview.main(new String[] { "-props",
57		"test/jalview/io/testProps.jvprops" });
58		}
59
60		/**
61		* @throws java.lang.Exception
62		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
63	1	@AfterClass(alwaysRun = true)...
64		public static void tearDownAfterClass() throws Exception
65		{
66	1	jalview.gui.Desktop.instance.closeAll_actionPerformed(null);
67
68		}
69
		100% Uncovered Elements: 0 (13) Complexity: 1 Complexity Density: 0.08 1PASS
70	1	@Test(groups = { "Functional" })...
71		public void testImportExportPeriodGaps() throws Exception
72		{
73	1	jalview.bin.Cache.setProperty("GAP_SYMBOL", ".");
74	1	assertTrue("Couldn't set gap character to '.'",
75		".".equals("" + jalview.bin.Cache.getProperty("GAP_SYMBOL")));
76	1	AlignFrame af = new jalview.io.FileLoader().LoadFileWaitTillLoaded(
77		"examples/uniref50.fa", DataSourceType.FILE);
78	1	assertTrue("Didn't read in the example file correctly.", af != null);
79	1	assertTrue("Didn't set the gap character correctly", af.getViewport()
80		.getAlignment().getSequenceAt(0).getCharAt(5) == '.');
81
82	1	SequenceGroup sg = new SequenceGroup();
83	1	sg.addSequence(af.getViewport().getAlignment().getSequenceAt(0), false);
84	1	sg.addSequence(af.getViewport().getAlignment().getSequenceAt(1), false);
85	1	sg.setStartRes(1);
86	1	sg.setEndRes(7);
87	1	af.getViewport().setSelectionGroup(sg);
88	1	String fseqs = new FormatAdapter(af.alignPanel).formatSequences(
89		FileFormat.Fasta, af.alignPanel, true);
90	1	assertTrue("Couldn't find '.' in the exported region\n" + fseqs,
91		fseqs.indexOf(".") > -1);
92		}
93		}