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Coverage Report

  1. Project Clover database Thu Aug 13 2020 12:04:21 BST
  2. Package jalview.xml.binding.jalview

File SequenceSet.java

 

Coverage histogram

../../../../img/srcFileCovDistChart10.png
0% of files have more coverage

Code metrics

8
20
12
2
318
86
16
0.8
1.67
6
1.33

Classes

Class Line # Actions
SequenceSet 62 16 12
0.9062590.6%
SequenceSet.SequenceSetProperties 261 4 4
1.0100%
 

Contributing tests

This file is covered by 22 tests. .

Source view

1    //
2    // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
3    // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
4    // Any modifications to this file will be lost upon recompilation of the source schema.
5    // Generated on: 2019.06.07 at 02:21:15 PM BST
6    //
7   
8   
9    package jalview.xml.binding.jalview;
10   
11    import java.util.ArrayList;
12    import java.util.List;
13    import javax.xml.bind.annotation.XmlAccessType;
14    import javax.xml.bind.annotation.XmlAccessorType;
15    import javax.xml.bind.annotation.XmlAttribute;
16    import javax.xml.bind.annotation.XmlElement;
17    import javax.xml.bind.annotation.XmlRootElement;
18    import javax.xml.bind.annotation.XmlType;
19   
20   
21    /**
22    * <p>Java class for anonymous complex type.
23    *
24    * <p>The following schema fragment specifies the expected content contained within this class.
25    *
26    * <pre>
27    * &lt;complexType>
28    * &lt;complexContent>
29    * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
30    * &lt;sequence>
31    * &lt;element ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" minOccurs="0"/>
32    * &lt;element ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" minOccurs="0"/>
33    * &lt;element name="sequenceSetProperties" maxOccurs="unbounded" minOccurs="0">
34    * &lt;complexType>
35    * &lt;complexContent>
36    * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
37    * &lt;attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
38    * &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
39    * &lt;/restriction>
40    * &lt;/complexContent>
41    * &lt;/complexType>
42    * &lt;/element>
43    * &lt;element ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" minOccurs="0"/>
44    * &lt;/sequence>
45    * &lt;attribute name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
46    * &lt;attribute name="datasetId" type="{http://www.w3.org/2001/XMLSchema}string" />
47    * &lt;/restriction>
48    * &lt;/complexContent>
49    * &lt;/complexType>
50    * </pre>
51    *
52    *
53    */
54    @XmlAccessorType(XmlAccessType.FIELD)
55    @XmlType(name = "", propOrder = {
56    "sequence",
57    "annotation",
58    "sequenceSetProperties",
59    "alcodonFrame"
60    })
61    @XmlRootElement(name = "SequenceSet")
 
62    public class SequenceSet {
63   
64    @XmlElement(name = "Sequence")
65    protected List<Sequence> sequence;
66    @XmlElement(name = "Annotation")
67    protected List<Annotation> annotation;
68    protected List<SequenceSet.SequenceSetProperties> sequenceSetProperties;
69    @XmlElement(name = "AlcodonFrame")
70    protected List<AlcodonFrame> alcodonFrame;
71    @XmlAttribute(name = "gapChar", required = true)
72    protected String gapChar;
73    @XmlAttribute(name = "datasetId")
74    protected String datasetId;
75   
76    /**
77    * Gets the value of the sequence property.
78    *
79    * <p>
80    * This accessor method returns a reference to the live list,
81    * not a snapshot. Therefore any modification you make to the
82    * returned list will be present inside the JAXB object.
83    * This is why there is not a <CODE>set</CODE> method for the sequence property.
84    *
85    * <p>
86    * For example, to add a new item, do as follows:
87    * <pre>
88    * getSequence().add(newItem);
89    * </pre>
90    *
91    *
92    * <p>
93    * Objects of the following type(s) are allowed in the list
94    * {@link Sequence }
95    *
96    *
97    */
 
98  1309 toggle public List<Sequence> getSequence() {
99  1309 if (sequence == null) {
100  75 sequence = new ArrayList<Sequence>();
101    }
102  1309 return this.sequence;
103    }
104   
105    /**
106    * Gets the value of the annotation property.
107    *
108    * <p>
109    * This accessor method returns a reference to the live list,
110    * not a snapshot. Therefore any modification you make to the
111    * returned list will be present inside the JAXB object.
112    * This is why there is not a <CODE>set</CODE> method for the annotation property.
113    *
114    * <p>
115    * For example, to add a new item, do as follows:
116    * <pre>
117    * getAnnotation().add(newItem);
118    * </pre>
119    *
120    *
121    * <p>
122    * Objects of the following type(s) are allowed in the list
123    * {@link Annotation }
124    *
125    *
126    */
 
127  518 toggle public List<Annotation> getAnnotation() {
128  518 if (annotation == null) {
129  49 annotation = new ArrayList<Annotation>();
130    }
131  518 return this.annotation;
132    }
133   
134    /**
135    * Gets the value of the sequenceSetProperties property.
136    *
137    * <p>
138    * This accessor method returns a reference to the live list,
139    * not a snapshot. Therefore any modification you make to the
140    * returned list will be present inside the JAXB object.
141    * This is why there is not a <CODE>set</CODE> method for the sequenceSetProperties property.
142    *
143    * <p>
144    * For example, to add a new item, do as follows:
145    * <pre>
146    * getSequenceSetProperties().add(newItem);
147    * </pre>
148    *
149    *
150    * <p>
151    * Objects of the following type(s) are allowed in the list
152    * {@link SequenceSet.SequenceSetProperties }
153    *
154    *
155    */
 
156  149 toggle public List<SequenceSet.SequenceSetProperties> getSequenceSetProperties() {
157  149 if (sequenceSetProperties == null) {
158  86 sequenceSetProperties = new ArrayList<SequenceSet.SequenceSetProperties>();
159    }
160  149 return this.sequenceSetProperties;
161    }
162   
163    /**
164    * Gets the value of the alcodonFrame property.
165    *
166    * <p>
167    * This accessor method returns a reference to the live list,
168    * not a snapshot. Therefore any modification you make to the
169    * returned list will be present inside the JAXB object.
170    * This is why there is not a <CODE>set</CODE> method for the alcodonFrame property.
171    *
172    * <p>
173    * For example, to add a new item, do as follows:
174    * <pre>
175    * getAlcodonFrame().add(newItem);
176    * </pre>
177    *
178    *
179    * <p>
180    * Objects of the following type(s) are allowed in the list
181    * {@link AlcodonFrame }
182    *
183    *
184    */
 
185  86 toggle public List<AlcodonFrame> getAlcodonFrame() {
186  86 if (alcodonFrame == null) {
187  86 alcodonFrame = new ArrayList<AlcodonFrame>();
188    }
189  86 return this.alcodonFrame;
190    }
191   
192    /**
193    * Gets the value of the gapChar property.
194    *
195    * @return
196    * possible object is
197    * {@link String }
198    *
199    */
 
200  0 toggle public String getGapChar() {
201  0 return gapChar;
202    }
203   
204    /**
205    * Sets the value of the gapChar property.
206    *
207    * @param value
208    * allowed object is
209    * {@link String }
210    *
211    */
 
212  45 toggle public void setGapChar(String value) {
213  45 this.gapChar = value;
214    }
215   
216    /**
217    * Gets the value of the datasetId property.
218    *
219    * @return
220    * possible object is
221    * {@link String }
222    *
223    */
 
224  285 toggle public String getDatasetId() {
225  285 return datasetId;
226    }
227   
228    /**
229    * Sets the value of the datasetId property.
230    *
231    * @param value
232    * allowed object is
233    * {@link String }
234    *
235    */
 
236  45 toggle public void setDatasetId(String value) {
237  45 this.datasetId = value;
238    }
239   
240   
241    /**
242    * <p>Java class for anonymous complex type.
243    *
244    * <p>The following schema fragment specifies the expected content contained within this class.
245    *
246    * <pre>
247    * &lt;complexType>
248    * &lt;complexContent>
249    * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
250    * &lt;attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
251    * &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
252    * &lt;/restriction>
253    * &lt;/complexContent>
254    * &lt;/complexType>
255    * </pre>
256    *
257    *
258    */
259    @XmlAccessorType(XmlAccessType.FIELD)
260    @XmlType(name = "")
 
261    public static class SequenceSetProperties {
262   
263    @XmlAttribute(name = "key")
264    protected String key;
265    @XmlAttribute(name = "value")
266    protected String value;
267   
268    /**
269    * Gets the value of the key property.
270    *
271    * @return
272    * possible object is
273    * {@link String }
274    *
275    */
 
276  21 toggle public String getKey() {
277  21 return key;
278    }
279   
280    /**
281    * Sets the value of the key property.
282    *
283    * @param value
284    * allowed object is
285    * {@link String }
286    *
287    */
 
288  21 toggle public void setKey(String value) {
289  21 this.key = value;
290    }
291   
292    /**
293    * Gets the value of the value property.
294    *
295    * @return
296    * possible object is
297    * {@link String }
298    *
299    */
 
300  21 toggle public String getValue() {
301  21 return value;
302    }
303   
304    /**
305    * Sets the value of the value property.
306    *
307    * @param value
308    * allowed object is
309    * {@link String }
310    *
311    */
 
312  21 toggle public void setValue(String value) {
313  21 this.value = value;
314    }
315   
316    }
317   
318    }
  • Report generated by OpenClover v 4.4.1 on Thu Aug 13 2020 12:06:48 BST using coverage data from Thu Aug 13 2020 12:06:40 BST.
  • OpenClover is free and open-source software.