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Coverage Report

  1. Project Clover database Thu Dec 4 2025 14:43:25 GMT
  2. Package jalview.ws.dbsources

File EmblSource.java

 

Coverage histogram

../../../img/srcFileCovDistChart6.png
37% of files have more coverage

Code metrics

0
5
5
1
76
30
5
1
1
5
1

Classes

Class Line # Actions
EmblSource 31 5 5
0.660%
 

Contributing tests

This file is covered by 196 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.ws.dbsources;
22   
23    import jalview.datamodel.AlignmentI;
24    import jalview.datamodel.DBRefSource;
25   
26   
27    /**
28    * @author JimP
29    *
30    */
 
31    public class EmblSource extends EmblFlatfileSource // was EmblXmlSource
32    {
33   
 
34  17 toggle public EmblSource()
35    {
36  17 super();
37    }
38   
39    /*
40    * (non-Javadoc)
41    *
42    * @see jalview.ws.DbSourceProxy#getDbSource()
43    */
 
44  8263 toggle @Override
45    public String getDbSource()
46    {
47  8263 return DBRefSource.EMBL;
48    }
49   
50    /*
51    * (non-Javadoc)
52    *
53    * @see jalview.ws.DbSourceProxy#getSequenceRecords(java.lang.String[])
54    */
 
55  0 toggle @Override
56    public AlignmentI getSequenceRecords(String queries) throws Exception
57    {
58  0 return getEmblSequenceRecords(DBRefSource.EMBL, queries);
59   
60    }
61   
62    /**
63    * return LHD_CHICK coding gene
64    */
 
65  0 toggle @Override
66    public String getTestQuery()
67    {
68  0 return "X53828";
69    }
70   
 
71  8246 toggle @Override
72    public String getDbName()
73    {
74  8246 return "EMBL"; // getDbSource();
75    }
76    }
  • Report generated by OpenClover v 4.4.1 on Thu Dec 4 2025 14:53:28 GMT using coverage data from Thu Dec 4 2025 14:53:14 GMT.
  • OpenClover is free and open-source software.