Class |
Line # |
Actions |
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PDBFeatureSettings | 31 | 14 | 9 |
1 | /* | |
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
4 | * | |
5 | * This file is part of Jalview. | |
6 | * | |
7 | * Jalview is free software: you can redistribute it and/or | |
8 | * modify it under the terms of the GNU General Public License | |
9 | * as published by the Free Software Foundation, either version 3 | |
10 | * of the License, or (at your option) any later version. | |
11 | * | |
12 | * Jalview is distributed in the hope that it will be useful, but | |
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
15 | * PURPOSE. See the GNU General Public License for more details. | |
16 | * | |
17 | * You should have received a copy of the GNU General Public License | |
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
20 | */ | |
21 | package jalview.io; | |
22 | ||
23 | import jalview.api.FeatureColourI; | |
24 | import jalview.schemes.FeatureColour; | |
25 | import jalview.schemes.FeatureSettingsAdapter; | |
26 | ||
27 | import java.awt.Color; | |
28 | ||
29 | import mc_view.PDBChain; | |
30 | ||
31 | public class PDBFeatureSettings extends FeatureSettingsAdapter | |
32 | { | |
33 | // TODO find one central place to define feature names | |
34 | private static final String FEATURE_INSERTION = "INSERTION"; | |
35 | ||
36 | private static final String FEATURE_RES_NUM = PDBChain.RESNUM_FEATURE; | |
37 | ||
38 | 191 | @Override |
39 | public boolean isFeatureHidden(String type) | |
40 | { | |
41 | 191 | return type.equalsIgnoreCase(FEATURE_RES_NUM); |
42 | } | |
43 | ||
44 | 191 | @Override |
45 | public FeatureColourI getFeatureColour(String type) | |
46 | { | |
47 | 191 | if (type.equalsIgnoreCase(FEATURE_INSERTION)) |
48 | { | |
49 | 0 | return new FeatureColour() |
50 | { | |
51 | ||
52 | 0 | @Override |
53 | public Color getColour() | |
54 | { | |
55 | 0 | return Color.RED; |
56 | } | |
57 | }; | |
58 | } | |
59 | 191 | return null; |
60 | } | |
61 | ||
62 | /** | |
63 | * Order to render insertion after ResNum | |
64 | */ | |
65 | 384 | @Override |
66 | public int compare(String feature1, String feature2) | |
67 | { | |
68 | 384 | if (feature1.equalsIgnoreCase(FEATURE_INSERTION)) |
69 | { | |
70 | 0 | return +1; |
71 | } | |
72 | 384 | if (feature2.equalsIgnoreCase(FEATURE_INSERTION)) |
73 | { | |
74 | 0 | return -1; |
75 | } | |
76 | 384 | if (feature1.equalsIgnoreCase(FEATURE_RES_NUM)) |
77 | { | |
78 | 1 | return +1; |
79 | } | |
80 | 383 | if (feature2.equalsIgnoreCase(FEATURE_RES_NUM)) |
81 | { | |
82 | 112 | return -1; |
83 | } | |
84 | 271 | return 0; |
85 | } | |
86 | } |