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Test structureOpeningArgsTest

Test
structureOpeningArgsTest 1PASS 6 Dec 13:53:08 1.284
 
structureOpeningArgsTest
com.stevesoft.pat.patInf   com.stevesoft.pat.patInf 1.0100%
jalview.io.DataSourceType   jalview.io.DataSourceType 1.0100%
jalview.renderer.ScaleRenderer.ScaleMark   jalview.renderer.ScaleRenderer.ScaleMark 1.0100%
jalview.ws.WSClient   jalview.ws.WSClient 1.0100%
jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder   jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder 1.0100%
jalview.urls.IdOrgSettings   jalview.urls.IdOrgSettings 1.0100%
jalview.datamodel.SecondaryStructureCount.SymbolCounts   jalview.datamodel.SecondaryStructureCount.SymbolCounts 1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts 1.0100%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme 1.0100%
jalview.structure.StructureImportSettings.TFType   jalview.structure.StructureImportSettings.TFType 1.0100%
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jalview.gui.StructureViewer.ViewerType   jalview.gui.StructureViewer.ViewerType 0.8461538684.6%
jalview.json.binding.biojs.BioJSReleasePojo   jalview.json.binding.biojs.BioJSReleasePojo 0.8461538684.6%
com.stevesoft.pat.Rthings   com.stevesoft.pat.Rthings 0.8461538684.6%
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jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance 0.7701149677%
jalview.structures.models.SequenceStructureBindingModel   jalview.structures.models.SequenceStructureBindingModel 0.7575%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme 0.7575%
jalview.fts.core.FTSDataColumnPreferences   jalview.fts.core.FTSDataColumnPreferences 0.745762774.6%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme 0.738095273.8%
jalview.workers.SecondaryStructureConsensusThread   jalview.workers.SecondaryStructureConsensusThread 0.7333333573.3%
jalview.io.JalviewFileChooser.RecentlyOpened   jalview.io.JalviewFileChooser.RecentlyOpened 0.7333333573.3%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread 0.7272727572.7%
jalview.io.JalviewFileFilter   jalview.io.JalviewFileFilter 0.726415172.6%
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer 0.7142857371.4%
jalview.util.LinkedIdentityHashSet.IdentityWrapper   jalview.util.LinkedIdentityHashSet.IdentityWrapper 0.7142857371.4%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.70491870.5%
jalview.jbgui.GStructureViewer   jalview.jbgui.GStructureViewer 0.703296770.3%
jalview.ws.jws2.jabaws2.Jws2InstanceFactory   jalview.ws.jws2.jabaws2.Jws2InstanceFactory 0.770%
jalview.json.binding.biojs.BioJSRepositoryPojo   jalview.json.binding.biojs.BioJSRepositoryPojo 0.687568.8%
jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher 0.678571467.9%
jalview.log.JalviewAppender   jalview.log.JalviewAppender 0.666666766.7%
jalview.ws.sifts.SiftsSettings   jalview.ws.sifts.SiftsSettings 0.666666766.7%
jalview.ws.utils.UrlDownloadClient   jalview.ws.utils.UrlDownloadClient 0.657142965.7%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder 0.6428571364.3%
jalview.bin.Cache.VersionChecker   jalview.bin.Cache.VersionChecker 0.629629663%
jalview.ws.jws2.JabaWsServerQuery   jalview.ws.jws2.JabaWsServerQuery 0.62562.5%
jalview.util.MapUtils   jalview.util.MapUtils 0.608695660.9%
com.stevesoft.pat.SubMark   com.stevesoft.pat.SubMark 0.660%
jalview.bin.argparser.SubVals   jalview.bin.argparser.SubVals 0.597938159.8%
jalview.util.ParseHtmlBodyAndLinks   jalview.util.ParseHtmlBodyAndLinks 0.594202959.4%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame 0.57354357.4%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager 0.571428657.1%
jalview.schemes.FeatureSettingsAdapter   jalview.schemes.FeatureSettingsAdapter 0.571428657.1%
jalview.workers.ConservationThread   jalview.workers.ConservationThread 0.568965556.9%
jalview.util.CaseInsensitiveString   jalview.util.CaseInsensitiveString 0.565217456.5%
jalview.jbgui.GDesktop   jalview.jbgui.GDesktop 0.561855756.2%
jalview.io.BioJsHTMLOutput   jalview.io.BioJsHTMLOutput 0.5656%
jalview.renderer.ScaleRenderer   jalview.renderer.ScaleRenderer 0.5656%
jalview.gui.AssociatePdbFileWithSeq   jalview.gui.AssociatePdbFileWithSeq 0.5555%
com.stevesoft.pat.OrMark   com.stevesoft.pat.OrMark 0.5555%
jalview.bin.ArgsParser   jalview.bin.ArgsParser 0.5555%
jalview.bin.argparser.BootstrapArgs   jalview.bin.argparser.BootstrapArgs 0.5454545654.5%
jalview.ext.jmol.JmolParser   jalview.ext.jmol.JmolParser 0.54454.4%
mc_view.PDBChain   mc_view.PDBChain 0.5439560454.4%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper 0.533898353.4%
com.stevesoft.pat.StrPos   com.stevesoft.pat.StrPos 0.523255852.3%
jalview.jbgui.GStructureChooser   jalview.jbgui.GStructureChooser 0.5024752650.2%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport 0.550%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties 0.550%
mc_view.Bond   mc_view.Bond 0.550%
com.stevesoft.pat.wrap.StringWrap   com.stevesoft.pat.wrap.StringWrap 0.550%
jalview.datamodel.ContactMapHolder   jalview.datamodel.ContactMapHolder 0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme 0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme 0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme 0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme 0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme 0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme 0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme 0.550%
com.stevesoft.pat.oneChar   com.stevesoft.pat.oneChar 0.485714348.6%
com.stevesoft.pat.Range   com.stevesoft.pat.Range 0.4772727247.7%
jalview.io.AlignFile   jalview.io.AlignFile 0.4726027347.3%
jalview.gui.PromptUserConfig   jalview.gui.PromptUserConfig 0.465909146.6%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer 0.4653465446.5%
jalview.gui.ProgressBar   jalview.gui.ProgressBar 0.4634146446.3%
jalview.bin.argparser.ArgParser   jalview.bin.argparser.ArgParser 0.4616541346.2%
com.stevesoft.pat.Bracket   com.stevesoft.pat.Bracket 0.4545%
jalview.bin.argparser.ArgValue   jalview.bin.argparser.ArgValue 0.447761244.8%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount 0.4436363644.4%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient 0.4429530244.3%
com.stevesoft.pat.FastMulti   com.stevesoft.pat.FastMulti 0.435185243.5%
jalview.gui.APQHandlers   jalview.gui.APQHandlers 0.434782643.5%
jalview.gui.Console   jalview.gui.Console 0.4334862543.3%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer 0.4326923243.3%
jalview.gui.AppJmol.RenderPanel   jalview.gui.AppJmol.RenderPanel 0.4324324443.2%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 0.4285714342.9%
jalview.io.StructureFile   jalview.io.StructureFile 0.42790742.8%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11 0.4166666641.7%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq 0.4153846241.5%
jalview.ext.so.SequenceOntology   jalview.ext.so.SequenceOntology 0.412541.2%
jalview.util.HttpUtils   jalview.util.HttpUtils 0.411764741.2%
jalview.gui.AppJmolBinding   jalview.gui.AppJmolBinding 0.4112149541.1%
jalview.datamodel.annotations.AnnotationRowBuilder   jalview.datamodel.annotations.AnnotationRowBuilder 0.4102564241%
jalview.util.Comparison   jalview.util.Comparison 0.4094488340.9%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset 0.409090940.9%
org.json.simple.parser.Yylex   org.json.simple.parser.Yylex 0.4076433240.8%
jalview.io.FileFormats   jalview.io.FileFormats 0.440%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource 0.440%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme 0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme 0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme 0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme 0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme 0.440%
jalview.structure.StructureImportSettings   jalview.structure.StructureImportSettings 0.440%
jalview.bin.Cache   jalview.bin.Cache 0.3980716239.8%
jalview.datamodel.PDBEntry   jalview.datamodel.PDBEntry 0.3913043439.1%
jalview.ext.jmol.JalviewJmolBinding   jalview.ext.jmol.JalviewJmolBinding 0.38989939%
jalview.io.FileLoader   jalview.io.FileLoader 0.3879598738.8%
jalview.datamodel.FloatContactMatrix   jalview.datamodel.FloatContactMatrix 0.3838%
jalview.gui.AlignViewport   jalview.gui.AlignViewport 0.3767123237.7%
jalview.bin.argparser.ArgValues   jalview.bin.argparser.ArgValues 0.3730158837.3%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.3724279737.2%
jalview.util.Format   jalview.util.Format 0.3685300436.9%
jalview.ws.datamodel.alphafold.PAEContactMatrix   jalview.ws.datamodel.alphafold.PAEContactMatrix 0.3628318636.3%
jalview.io.FastaFile   jalview.io.FastaFile 0.3603603536%
jalview.bin.Commands   jalview.bin.Commands 0.360303436%
jalview.util.MessageManager   jalview.util.MessageManager 0.3571428735.7%
jalview.jbgui.GStructureChooser.AssociateSeqPanel   jalview.jbgui.GStructureChooser.AssociateSeqPanel 0.352941235.3%
jalview.gui.UserQuestionnaireCheck   jalview.gui.UserQuestionnaireCheck 0.349397634.9%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature 0.3489208534.9%
jalview.bin.argparser.ArgValuesMap   jalview.bin.argparser.ArgValuesMap 0.3471882634.7%
org.json.simple.parser.JSONParser   org.json.simple.parser.JSONParser 0.3465346434.7%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle 0.344202934.4%
com.stevesoft.pat.Pattern   com.stevesoft.pat.Pattern 0.340277834%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer 0.3397435834%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.3287197432.9%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.3248407532.5%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges 0.3201320232%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.3171036231.7%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription 0.31531.5%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel 0.3144876431.4%
jalview.renderer.seqfeatures.FeatureColourFinder   jalview.renderer.seqfeatures.FeatureColourFinder 0.313725531.4%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager 0.3116219631.2%
jalview.gui.Desktop.MyDesktopPane   jalview.gui.Desktop.MyDesktopPane 0.3095238231%
jalview.gui.AppJmol   jalview.gui.AppJmol 0.3082706630.8%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader 0.298780529.9%
com.stevesoft.pat.Or   com.stevesoft.pat.Or 0.294871829.5%
jalview.structures.models.AAStructureBindingModel   jalview.structures.models.AAStructureBindingModel 0.2942555529.4%
jalview.ws.jws2.SequenceAnnotationWSClient   jalview.ws.jws2.SequenceAnnotationWSClient 0.2903225729%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource 0.285714328.6%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle 0.285714328.6%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.285714328.6%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme 0.285714328.6%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport 0.2847919828.5%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer 0.2830357328.3%
mc_view.Atom   mc_view.Atom 0.282051328.2%
jalview.gui.structurechooser.StructureChooserQuerySource   jalview.gui.structurechooser.StructureChooserQuerySource 0.2828%
jalview.io.IdentifyFile   jalview.io.IdentifyFile 0.279365127.9%
jalview.io.FileParse   jalview.io.FileParse 0.2785515227.9%
jalview.gui.IdCanvas   jalview.gui.IdCanvas 0.2771929827.7%
jalview.util.Log4j   jalview.util.Log4j 0.2727272827.3%
jalview.util.QuickSort   jalview.util.QuickSort 0.2718446627.2%
jalview.bin.Jalview   jalview.bin.Jalview 0.2689530626.9%
jalview.io.JalviewFileChooser   jalview.io.JalviewFileChooser 0.2656826726.6%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme 0.2608695626.1%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.258503425.9%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore 0.2567975825.7%
jalview.structure.StructureCommandsBase   jalview.structure.StructureCommandsBase 0.2560975625.6%
com.stevesoft.pat.Regex   com.stevesoft.pat.Regex 0.2536363625.4%
jalview.gui.StructureViewerBase   jalview.gui.StructureViewerBase 0.2522255225.2%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster 0.2525%
jalview.renderer.AnnotationRendererFactory   jalview.renderer.AnnotationRendererFactory 0.2525%
jalview.io.gff.SequenceOntologyFactory   jalview.io.gff.SequenceOntologyFactory 0.2525%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty 0.2525%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes 0.2456140424.6%
jalview.ws.uimodel.AlignAnalysisUIText   jalview.ws.uimodel.AlignAnalysisUIText 0.2439024424.4%
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jalview.log.JLogger   jalview.log.JLogger 0.2417582424.2%
jalview.util.ErrorLog   jalview.util.ErrorLog 0.2352941223.5%
jalview.bin.BuildDetails   jalview.bin.BuildDetails 0.2352941223.5%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher 0.2323943723.2%
jalview.gui.Desktop   jalview.gui.Desktop 0.2264472222.6%
jalview.datamodel.features.FeatureAttributes   jalview.datamodel.features.FeatureAttributes 0.224806222.5%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client 0.2228915722.3%
jalview.gui.ScalePanel   jalview.gui.ScalePanel 0.2187521.9%
jalview.viewmodel.seqfeatures.FeaturesDisplayed   jalview.viewmodel.seqfeatures.FeaturesDisplayed 0.2187521.9%
jalview.util.MapList   jalview.util.MapList 0.2149532721.5%
jalview.io.PDBFeatureSettings   jalview.io.PDBFeatureSettings 0.2142857221.4%
jalview.datamodel.features.FeatureAttributes.AttributeData   jalview.datamodel.features.FeatureAttributes.AttributeData 0.2127659621.3%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels 0.2115384621.2%
jalview.ws.dbsources.EBIAlfaFold   jalview.ws.dbsources.EBIAlfaFold 0.2089552320.9%
jalview.ws.rest.InputType   jalview.ws.rest.InputType 0.2056074720.6%
jalview.viewmodel.seqfeatures.FeatureRendererModel   jalview.viewmodel.seqfeatures.FeatureRendererModel 0.2050078220.5%
jalview.log.JLoggerLog4j   jalview.log.JLoggerLog4j 0.203883520.4%
jalview.bin.Console   jalview.bin.Console 0.2019704420.2%
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com.stevesoft.pat.patInt   com.stevesoft.pat.patInt 0.220%
jalview.bin.JalviewTaskbar   jalview.bin.JalviewTaskbar 0.220%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels 0.1982570719.8%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.1964618319.6%
jalview.ws.datamodel.alphafold.MappableContactMatrix   jalview.ws.datamodel.alphafold.MappableContactMatrix 0.1924686119.2%
jalview.datamodel.SecondaryStructureCount   jalview.datamodel.SecondaryStructureCount 0.1914062519.1%
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jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme 0.176470617.6%
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jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter 0.1674876816.7%
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jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel 0.1477885714.8%
jalview.fts.core.FTSRestClient   jalview.fts.core.FTSRestClient 0.1467181414.7%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore 0.1458333314.6%
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jalview.util.FileUtils   jalview.util.FileUtils 0.1397849514%
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jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.1318565513.2%
jalview.util.ColorUtils   jalview.util.ColorUtils 0.1290322512.9%
jalview.gui.StructureViewer   jalview.gui.StructureViewer 0.1287128812.9%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector 0.12408759412.4%
jalview.io.FileFormat   jalview.io.FileFormat 0.1240310112.4%
jalview.util.StringUtils   jalview.util.StringUtils 0.1230769212.3%
jalview.ext.jmol.JmolCommands   jalview.ext.jmol.JmolCommands 0.1214953312.1%
jalview.io.FormatAdapter   jalview.io.FormatAdapter 0.1212%
jalview.structure.StructureCommand   jalview.structure.StructureCommand 0.1212%
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jalview.util.ShortcutKeyMaskExWrapper   jalview.util.ShortcutKeyMaskExWrapper 0.1111111111.1%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour 0.1095890411%
jalview.datamodel.Mapping   jalview.datamodel.Mapping 0.10389610410.4%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix 0.1028806610.3%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile 0.10256410410.3%
jalview.bin.argparser.Arg   jalview.bin.argparser.Arg 0.099397599.9%
com.stevesoft.pat.parsePerl   com.stevesoft.pat.parsePerl 0.098639469.9%
org.json.simple.parser.Yytoken   org.json.simple.parser.Yytoken 0.096774199.7%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas 0.096192389.6%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker 0.09523819.5%
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient   jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient 0.093759.4%
jalview.util.JSONUtils   jalview.util.JSONUtils 0.090909099.1%
jalview.util.ChannelProperties   jalview.util.ChannelProperties 0.0896551769%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam 0.086956528.7%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb 0.085106388.5%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher 0.0833333368.3%
jalview.structure.StructureMapping   jalview.structure.StructureMapping 0.082901558.3%
jalview.gui.StructureChooser   jalview.gui.StructureChooser 0.082853858.3%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl 0.081081088.1%
jalview.urls.UrlProvider   jalview.urls.UrlProvider 0.079207927.9%
jalview.schemes.FeatureColour   jalview.schemes.FeatureColour 0.077894747.8%
jalview.gui.IdPanel   jalview.gui.IdPanel 0.067264576.7%
jalview.util.LaunchUtils   jalview.util.LaunchUtils 0.0661764746.6%
jalview.fts.service.pdb.PDBFTSRestClient   jalview.fts.service.pdb.PDBFTSRestClient 0.065502186.6%
com.stevesoft.pat.RegOpt   com.stevesoft.pat.RegOpt 0.06474826.5%
jalview.analysis.CrossRef   jalview.analysis.CrossRef 0.063524596.4%
jalview.datamodel.DBRefEntry   jalview.datamodel.DBRefEntry 0.0616438356.2%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu 0.059405945.9%
jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher 0.0577777775.8%
jalview.urls.CustomUrlProvider   jalview.urls.CustomUrlProvider 0.0569620245.7%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList 0.0560747655.6%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.0542452825.4%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes 0.0496894425%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.045317224.5%
jalview.gui.WsParamSetManager   jalview.gui.WsParamSetManager 0.0429447854.3%
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource   jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource 0.0390879473.9%
org.json.simple.JSONObject   org.json.simple.JSONObject 0.037735853.8%
jalview.urls.IdentifiersUrlProvider   jalview.urls.IdentifiersUrlProvider 0.0366972463.7%
jalview.util.UrlLink   jalview.util.UrlLink 0.034090913.4%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient 0.0310559013.1%
com.stevesoft.pat.RegRes   com.stevesoft.pat.RegRes 0.0289855082.9%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.027397262.7%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme 0.0254237282.5%
jalview.util.MappingUtils   jalview.util.MappingUtils 0.0237068962.4%
jalview.gui.structurechooser.PDBStructureChooserQuerySource   jalview.gui.structurechooser.PDBStructureChooserQuerySource 0.017751481.8%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils 0.0172651931.7%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.0156251.6%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot 0.0155642021.6%
mc_view.PDBfile   mc_view.PDBfile 0.0150375941.5%
jalview.controller.AlignViewController   jalview.controller.AlignViewController 0.0135593221.4%
jalview.datamodel.SearchResults   jalview.datamodel.SearchResults 0.0128205131.3%
jalview.gui.SeqPanel   jalview.gui.SeqPanel 0.0125082291.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport 0.0122699381.2%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection 0.0103092781%
jalview.gui.JvOptionPane   jalview.gui.JvOptionPane 0.0091383810.9%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher 0.0089285720.9%
jalview.datamodel.GroupSet   jalview.datamodel.GroupSet 0.008620690.9%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene 0.0081632650.8%
org.json.simple.JSONArray   org.json.simple.JSONArray 0.0080645160.8%
jalview.gui.QuitHandler   jalview.gui.QuitHandler 0.0077519380.8%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer 0.007547170.8%
com.stevesoft.pat.CaseMgr   com.stevesoft.pat.CaseMgr 0.00278551530.3%
jalview.schemes.ResidueProperties   jalview.schemes.ResidueProperties 0.00105042020.1%