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com.stevesoft.pat.oneChar
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com.stevesoft.pat.Range
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com.stevesoft.pat.StrPos
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com.stevesoft.pat.Pattern
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jalview.viewmodel.ViewportProperties
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mc_view.Bond
mc_view.Bond
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jalview.datamodel.ResidueCount
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com.stevesoft.pat.parsePerl
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jalview.gui.SeqCanvas
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jalview.xml.binding.jalview.Sequence
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jalview.io.StructureFile
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jalview.util.ShortcutKeyMaskExWrapper11
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
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jalview.util.Comparison
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0.440%
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jalview.datamodel.Range
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org.json.simple.parser.Yylex
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jalview.util.Format
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jalview.ws.jws1.Discoverer
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jalview.xml.binding.jalview.VAMSAS
jalview.xml.binding.jalview.VAMSAS
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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jalview.datamodel.PDBEntry.Type
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jalview.gui.IdwidthAdjuster
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0.302631630.3%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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jalview.datamodel.HiddenSequences
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ext.vamsas.ServiceHandle
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mc_view.Atom
mc_view.Atom
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jalview.structure.StructureSelectionManager
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jalview.datamodel.features.FeatureAttributes
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.2695312527%
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jalview.util.QuickSort
jalview.util.QuickSort
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jalview.schemes.IdColourScheme
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jalview.project.Jalview2XML
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
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com.stevesoft.pat.NullPattern
com.stevesoft.pat.NullPattern
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0.2525%
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com.stevesoft.pat.StringRule
com.stevesoft.pat.StringRule
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0.2525%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.schemes.ColourSchemeProperty
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0.2525%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
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0.2456140424.6%
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jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.io.FileParse
jalview.io.FileParse
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0.2423398324.2%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.2424%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
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0.2397260224%
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
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0.2391304423.9%
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jalview.gui.TreePanel
jalview.gui.TreePanel
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0.2390670623.9%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2312925223.1%
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jalview.datamodel.SequenceNode
jalview.datamodel.SequenceNode
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0.2307692323.1%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.2287581722.9%
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jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
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0.2270029622.7%
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jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
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0.226123622.6%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.2233115422.3%
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jalview.structure.StructureMapping
jalview.structure.StructureMapping
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0.2176165721.8%
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jalview.gui.AppJmol
jalview.gui.AppJmol
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0.2142857221.4%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.2115384621.2%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.2079207920.8%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.2029795220.3%
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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0.220%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.1986301419.9%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1970443319.7%
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jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
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0.1962616919.6%
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jalview.io.JalviewFileChooser
jalview.io.JalviewFileChooser
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0.1955719619.6%
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jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
|
0.1935483819.4%
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jalview.gui.BlogReader
jalview.gui.BlogReader
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0.1933701619.3%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.1914062519.1%
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jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
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0.1805392818.1%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1803278618%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.176470617.6%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1723076917.2%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.1672060316.7%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.1650793716.5%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1555555615.6%
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jalview.viewmodel.seqfeatures.FeatureRendererSettings
jalview.viewmodel.seqfeatures.FeatureRendererSettings
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0.1555555615.6%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1462728514.6%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.1458333314.6%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.1428571514.3%
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jalview.log.JLogger
jalview.log.JLogger
|
0.1428571514.3%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.1428571514.3%
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com.stevesoft.pat.Branch
com.stevesoft.pat.Branch
|
0.140939614.1%
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jalview.gui.Desktop
jalview.gui.Desktop
|
0.13847913.8%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.1367924513.7%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.1333333413.3%
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jalview.bin.Console
jalview.bin.Console
|
0.1330049213.3%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.1229508212.3%
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jalview.structure.StructureCommand
jalview.structure.StructureCommand
|
0.1212%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.11538461611.5%
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jalview.util.MapList
jalview.util.MapList
|
0.11526479611.5%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
|
0.1111111111.1%
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jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
|
0.1111111111.1%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.1095890411%
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jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
|
0.10736842510.7%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.1057401810.6%
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.10389610410.4%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.1028806610.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
|
0.096774199.7%
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jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.096774199.7%
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jalview.util.ChannelProperties
jalview.util.ChannelProperties
|
0.0965517249.7%
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jalview.util.JSONUtils
jalview.util.JSONUtils
|
0.090909099.1%
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com.stevesoft.pat.ReplaceRule
com.stevesoft.pat.ReplaceRule
|
0.08771938.8%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.085106388.5%
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jalview.util.Platform
jalview.util.Platform
|
0.084905668.5%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.0843373468.4%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.gui.Console
jalview.gui.Console
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0.082568818.3%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.081300818.1%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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0.081081088.1%
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jalview.urls.UrlProvider
jalview.urls.UrlProvider
|
0.079207927.9%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.074766357.5%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.067264576.7%
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.0620155046.2%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
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jalview.gui.TreeCanvas
jalview.gui.TreeCanvas
|
0.0590858425.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
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jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
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0.0576923085.8%
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jalview.urls.CustomUrlProvider
jalview.urls.CustomUrlProvider
|
0.0569620245.7%
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jalview.bin.Cache
jalview.bin.Cache
|
0.0509641885.1%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.043478264.3%
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
|
0.0429447854.3%
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jalview.util.UrlLink
jalview.util.UrlLink
|
0.037878793.8%
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org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
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jalview.urls.IdentifiersUrlProvider
jalview.urls.IdentifiersUrlProvider
|
0.0366972463.7%
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jalview.gui.SliderPanel
jalview.gui.SliderPanel
|
0.0348837233.5%
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jalview.gui.StructureViewer
jalview.gui.StructureViewer
|
0.0346534663.5%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0254237282.5%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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0.024171272.4%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0237288142.4%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.017182131.7%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0155642021.6%
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mc_view.PDBfile
mc_view.PDBfile
|
0.0150375941.5%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.0128205131.3%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0125082291.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0122699381.2%
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jalview.bin.Jalview
jalview.bin.Jalview
|
0.0117328521.2%
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jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
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org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
|
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.0077519380.8%
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com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
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jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00105042020.1%
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