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package jalview.schemabinding.version2; |
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import org.exolab.castor.xml.Marshaller; |
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import org.exolab.castor.xml.Unmarshaller; |
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@version |
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| 60.7% |
Uncovered Elements: 203 (516) |
Complexity: 232 |
Complexity Density: 0.82 |
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public class Viewport implements java.io.Serializable |
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{ |
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private boolean _conservationSelected; |
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private boolean _has_conservationSelected; |
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private boolean _pidSelected; |
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private boolean _has_pidSelected; |
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private java.lang.String _bgColour; |
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private int _consThreshold; |
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private boolean _has_consThreshold; |
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private int _pidThreshold; |
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private boolean _has_pidThreshold; |
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private java.lang.String _title; |
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private boolean _showFullId; |
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private boolean _has_showFullId; |
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private boolean _rightAlignIds; |
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private boolean _has_rightAlignIds; |
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private boolean _showText; |
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private boolean _has_showText; |
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private boolean _showColourText; |
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private boolean _has_showColourText; |
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private boolean _showUnconserved = false; |
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private boolean _has_showUnconserved; |
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private boolean _showBoxes; |
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private boolean _has_showBoxes; |
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private boolean _wrapAlignment; |
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private boolean _has_wrapAlignment; |
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private boolean _renderGaps; |
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private boolean _has_renderGaps; |
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private boolean _showSequenceFeatures; |
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private boolean _has_showSequenceFeatures; |
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private boolean _showNPfeatureTooltip; |
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private boolean _has_showNPfeatureTooltip; |
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private boolean _showDbRefTooltip; |
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private boolean _has_showDbRefTooltip; |
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private boolean _followHighlight = true; |
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private boolean _has_followHighlight; |
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private boolean _followSelection = true; |
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private boolean _has_followSelection; |
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private boolean _showAnnotation; |
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private boolean _has_showAnnotation; |
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private boolean _centreColumnLabels = false; |
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private boolean _has_centreColumnLabels; |
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private boolean _showGroupConservation = false; |
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private boolean _has_showGroupConservation; |
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private boolean _showGroupConsensus = false; |
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private boolean _has_showGroupConsensus; |
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private boolean _showConsensusHistogram = true; |
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private boolean _has_showConsensusHistogram; |
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private boolean _showSequenceLogo = false; |
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private boolean _has_showSequenceLogo; |
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private boolean _normaliseSequenceLogo = false; |
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private boolean _has_normaliseSequenceLogo; |
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private boolean _ignoreGapsinConsensus = true; |
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private boolean _has_ignoreGapsinConsensus; |
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private int _startRes; |
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private boolean _has_startRes; |
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private int _startSeq; |
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private boolean _has_startSeq; |
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private java.lang.String _fontName; |
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private int _fontSize; |
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private boolean _has_fontSize; |
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private int _fontStyle; |
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private boolean _has_fontStyle; |
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private boolean _scaleProteinAsCdna = true; |
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private boolean _has_scaleProteinAsCdna; |
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private java.lang.String _viewName; |
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private java.lang.String _sequenceSetId; |
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private boolean _gatheredViews; |
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private boolean _has_gatheredViews; |
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private int _textCol1; |
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private boolean _has_textCol1; |
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private int _textCol2; |
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private boolean _has_textCol2; |
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private int _textColThreshold; |
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private boolean _has_textColThreshold; |
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private java.lang.String _id; |
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private java.lang.String _complementId; |
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private int _width; |
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private boolean _has_width; |
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private int _height; |
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private boolean _has_height; |
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private int _xpos; |
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private boolean _has_xpos; |
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private int _ypos; |
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private boolean _has_ypos; |
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private jalview.schemabinding.version2.AnnotationColours _annotationColours; |
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private java.util.Vector _hiddenColumnsList; |
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private java.util.Vector _calcIdParamList; |
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| 100% |
Uncovered Elements: 0 (3) |
Complexity: 1 |
Complexity Density: 0.33 |
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public Viewport()... |
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{ |
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super(); |
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this._hiddenColumnsList = new java.util.Vector(); |
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this._calcIdParamList = new java.util.Vector(); |
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} |
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@param |
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@throws |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void addCalcIdParam(... |
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final jalview.schemabinding.version2.CalcIdParam vCalcIdParam) |
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throws java.lang.IndexOutOfBoundsException |
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{ |
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this._calcIdParamList.addElement(vCalcIdParam); |
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} |
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@param |
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@param |
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@throws |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void addCalcIdParam(final int index,... |
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final jalview.schemabinding.version2.CalcIdParam vCalcIdParam) |
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throws java.lang.IndexOutOfBoundsException |
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{ |
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this._calcIdParamList.add(index, vCalcIdParam); |
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} |
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@param |
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@throws |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void addHiddenColumns(... |
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final jalview.schemabinding.version2.HiddenColumns vHiddenColumns) |
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throws java.lang.IndexOutOfBoundsException |
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{ |
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this._hiddenColumnsList.addElement(vHiddenColumns); |
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} |
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@param |
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@param |
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@throws |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void addHiddenColumns(final int index,... |
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final jalview.schemabinding.version2.HiddenColumns vHiddenColumns) |
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throws java.lang.IndexOutOfBoundsException |
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{ |
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this._hiddenColumnsList.add(index, vHiddenColumns); |
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} |
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536 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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537 |
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public void deleteCentreColumnLabels()... |
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{ |
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this._has_centreColumnLabels = false; |
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} |
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542 |
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543 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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544 |
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public void deleteConsThreshold()... |
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{ |
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this._has_consThreshold = false; |
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} |
548 |
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549 |
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550 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
551 |
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public void deleteConservationSelected()... |
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{ |
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this._has_conservationSelected = false; |
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} |
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556 |
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557 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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558 |
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public void deleteFollowHighlight()... |
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{ |
560 |
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this._has_followHighlight = false; |
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} |
562 |
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563 |
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564 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
565 |
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public void deleteFollowSelection()... |
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{ |
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this._has_followSelection = false; |
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} |
569 |
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570 |
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571 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
572 |
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public void deleteFontSize()... |
573 |
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{ |
574 |
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this._has_fontSize = false; |
575 |
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} |
576 |
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577 |
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578 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
579 |
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public void deleteFontStyle()... |
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{ |
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this._has_fontStyle = false; |
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} |
583 |
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585 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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586 |
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public void deleteGatheredViews()... |
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{ |
588 |
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this._has_gatheredViews = false; |
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} |
590 |
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591 |
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592 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
593 |
0 |
public void deleteHeight()... |
594 |
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{ |
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this._has_height = false; |
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} |
597 |
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598 |
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599 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
600 |
0 |
public void deleteIgnoreGapsinConsensus()... |
601 |
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{ |
602 |
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this._has_ignoreGapsinConsensus = false; |
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} |
604 |
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605 |
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606 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
607 |
0 |
public void deleteNormaliseSequenceLogo()... |
608 |
|
{ |
609 |
0 |
this._has_normaliseSequenceLogo = false; |
610 |
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} |
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612 |
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|
613 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
614 |
0 |
public void deletePidSelected()... |
615 |
|
{ |
616 |
0 |
this._has_pidSelected = false; |
617 |
|
} |
618 |
|
|
619 |
|
|
620 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
621 |
0 |
public void deletePidThreshold()... |
622 |
|
{ |
623 |
0 |
this._has_pidThreshold = false; |
624 |
|
} |
625 |
|
|
626 |
|
|
627 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
628 |
0 |
public void deleteRenderGaps()... |
629 |
|
{ |
630 |
0 |
this._has_renderGaps = false; |
631 |
|
} |
632 |
|
|
633 |
|
|
634 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
635 |
0 |
public void deleteRightAlignIds()... |
636 |
|
{ |
637 |
0 |
this._has_rightAlignIds = false; |
638 |
|
} |
639 |
|
|
640 |
|
|
641 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
642 |
0 |
public void deleteScaleProteinAsCdna()... |
643 |
|
{ |
644 |
0 |
this._has_scaleProteinAsCdna = false; |
645 |
|
} |
646 |
|
|
647 |
|
|
648 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
649 |
0 |
public void deleteShowAnnotation()... |
650 |
|
{ |
651 |
0 |
this._has_showAnnotation = false; |
652 |
|
} |
653 |
|
|
654 |
|
|
655 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
656 |
0 |
public void deleteShowBoxes()... |
657 |
|
{ |
658 |
0 |
this._has_showBoxes = false; |
659 |
|
} |
660 |
|
|
661 |
|
|
662 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
663 |
0 |
public void deleteShowColourText()... |
664 |
|
{ |
665 |
0 |
this._has_showColourText = false; |
666 |
|
} |
667 |
|
|
668 |
|
|
669 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
670 |
0 |
public void deleteShowConsensusHistogram()... |
671 |
|
{ |
672 |
0 |
this._has_showConsensusHistogram = false; |
673 |
|
} |
674 |
|
|
675 |
|
|
676 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
677 |
0 |
public void deleteShowDbRefTooltip()... |
678 |
|
{ |
679 |
0 |
this._has_showDbRefTooltip = false; |
680 |
|
} |
681 |
|
|
682 |
|
|
683 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
684 |
0 |
public void deleteShowFullId()... |
685 |
|
{ |
686 |
0 |
this._has_showFullId = false; |
687 |
|
} |
688 |
|
|
689 |
|
|
690 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
691 |
0 |
public void deleteShowGroupConsensus()... |
692 |
|
{ |
693 |
0 |
this._has_showGroupConsensus = false; |
694 |
|
} |
695 |
|
|
696 |
|
|
697 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
698 |
0 |
public void deleteShowGroupConservation()... |
699 |
|
{ |
700 |
0 |
this._has_showGroupConservation = false; |
701 |
|
} |
702 |
|
|
703 |
|
|
704 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
705 |
0 |
public void deleteShowNPfeatureTooltip()... |
706 |
|
{ |
707 |
0 |
this._has_showNPfeatureTooltip = false; |
708 |
|
} |
709 |
|
|
710 |
|
|
711 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
712 |
0 |
public void deleteShowSequenceFeatures()... |
713 |
|
{ |
714 |
0 |
this._has_showSequenceFeatures = false; |
715 |
|
} |
716 |
|
|
717 |
|
|
718 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
719 |
0 |
public void deleteShowSequenceLogo()... |
720 |
|
{ |
721 |
0 |
this._has_showSequenceLogo = false; |
722 |
|
} |
723 |
|
|
724 |
|
|
725 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
726 |
0 |
public void deleteShowText()... |
727 |
|
{ |
728 |
0 |
this._has_showText = false; |
729 |
|
} |
730 |
|
|
731 |
|
|
732 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
733 |
0 |
public void deleteShowUnconserved()... |
734 |
|
{ |
735 |
0 |
this._has_showUnconserved = false; |
736 |
|
} |
737 |
|
|
738 |
|
|
739 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
740 |
0 |
public void deleteStartRes()... |
741 |
|
{ |
742 |
0 |
this._has_startRes = false; |
743 |
|
} |
744 |
|
|
745 |
|
|
746 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
747 |
0 |
public void deleteStartSeq()... |
748 |
|
{ |
749 |
0 |
this._has_startSeq = false; |
750 |
|
} |
751 |
|
|
752 |
|
|
753 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
754 |
0 |
public void deleteTextCol1()... |
755 |
|
{ |
756 |
0 |
this._has_textCol1 = false; |
757 |
|
} |
758 |
|
|
759 |
|
|
760 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
761 |
0 |
public void deleteTextCol2()... |
762 |
|
{ |
763 |
0 |
this._has_textCol2 = false; |
764 |
|
} |
765 |
|
|
766 |
|
|
767 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
768 |
0 |
public void deleteTextColThreshold()... |
769 |
|
{ |
770 |
0 |
this._has_textColThreshold = false; |
771 |
|
} |
772 |
|
|
773 |
|
|
774 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
775 |
0 |
public void deleteWidth()... |
776 |
|
{ |
777 |
0 |
this._has_width = false; |
778 |
|
} |
779 |
|
|
780 |
|
|
781 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
782 |
0 |
public void deleteWrapAlignment()... |
783 |
|
{ |
784 |
0 |
this._has_wrapAlignment = false; |
785 |
|
} |
786 |
|
|
787 |
|
|
788 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
789 |
0 |
public void deleteXpos()... |
790 |
|
{ |
791 |
0 |
this._has_xpos = false; |
792 |
|
} |
793 |
|
|
794 |
|
|
795 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
796 |
0 |
public void deleteYpos()... |
797 |
|
{ |
798 |
0 |
this._has_ypos = false; |
799 |
|
} |
800 |
|
|
801 |
|
|
802 |
|
|
803 |
|
|
804 |
|
@return |
805 |
|
|
806 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
807 |
0 |
public java.util.Enumeration enumerateCalcIdParam()... |
808 |
|
{ |
809 |
0 |
return this._calcIdParamList.elements(); |
810 |
|
} |
811 |
|
|
812 |
|
|
813 |
|
|
814 |
|
|
815 |
|
@return |
816 |
|
|
817 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
818 |
0 |
public java.util.Enumeration enumerateHiddenColumns()... |
819 |
|
{ |
820 |
0 |
return this._hiddenColumnsList.elements(); |
821 |
|
} |
822 |
|
|
823 |
|
|
824 |
|
|
825 |
|
|
826 |
|
@return |
827 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
828 |
39 |
public jalview.schemabinding.version2.AnnotationColours getAnnotationColours()... |
829 |
|
{ |
830 |
39 |
return this._annotationColours; |
831 |
|
} |
832 |
|
|
833 |
|
|
834 |
|
|
835 |
|
|
836 |
|
@return |
837 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
838 |
325 |
public java.lang.String getBgColour()... |
839 |
|
{ |
840 |
325 |
return this._bgColour; |
841 |
|
} |
842 |
|
|
843 |
|
|
844 |
|
|
845 |
|
|
846 |
|
@param |
847 |
|
@throws |
848 |
|
|
849 |
|
@return |
850 |
|
|
851 |
|
|
|
|
| 0% |
Uncovered Elements: 5 (5) |
Complexity: 3 |
Complexity Density: 1 |
|
852 |
0 |
public jalview.schemabinding.version2.CalcIdParam getCalcIdParam(... |
853 |
|
final int index) throws java.lang.IndexOutOfBoundsException |
854 |
|
{ |
855 |
|
|
856 |
0 |
if (index < 0 || index >= this._calcIdParamList.size()) |
857 |
|
{ |
858 |
0 |
throw new IndexOutOfBoundsException("getCalcIdParam: Index value '" |
859 |
|
+ index + "' not in range [0.." |
860 |
|
+ (this._calcIdParamList.size() - 1) + "]"); |
861 |
|
} |
862 |
|
|
863 |
0 |
return (jalview.schemabinding.version2.CalcIdParam) _calcIdParamList |
864 |
|
.get(index); |
865 |
|
} |
866 |
|
|
867 |
|
|
868 |
|
|
869 |
|
|
870 |
|
|
871 |
|
|
872 |
|
|
873 |
|
|
874 |
|
@return |
875 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
876 |
182 |
public jalview.schemabinding.version2.CalcIdParam[] getCalcIdParam()... |
877 |
|
{ |
878 |
182 |
jalview.schemabinding.version2.CalcIdParam[] array = new jalview.schemabinding.version2.CalcIdParam[0]; |
879 |
182 |
return (jalview.schemabinding.version2.CalcIdParam[]) this._calcIdParamList |
880 |
|
.toArray(array); |
881 |
|
} |
882 |
|
|
883 |
|
|
884 |
|
|
885 |
|
|
886 |
|
@return |
887 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
888 |
0 |
public int getCalcIdParamCount()... |
889 |
|
{ |
890 |
0 |
return this._calcIdParamList.size(); |
891 |
|
} |
892 |
|
|
893 |
|
|
894 |
|
|
895 |
|
|
896 |
|
@return |
897 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
898 |
0 |
public boolean getCentreColumnLabels()... |
899 |
|
{ |
900 |
0 |
return this._centreColumnLabels; |
901 |
|
} |
902 |
|
|
903 |
|
|
904 |
|
|
905 |
|
|
906 |
|
|
907 |
|
|
908 |
|
|
909 |
|
@return |
910 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
911 |
110 |
public java.lang.String getComplementId()... |
912 |
|
{ |
913 |
110 |
return this._complementId; |
914 |
|
} |
915 |
|
|
916 |
|
|
917 |
|
|
918 |
|
|
919 |
|
@return |
920 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
921 |
76 |
public int getConsThreshold()... |
922 |
|
{ |
923 |
76 |
return this._consThreshold; |
924 |
|
} |
925 |
|
|
926 |
|
|
927 |
|
|
928 |
|
|
929 |
|
@return |
930 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
931 |
182 |
public boolean getConservationSelected()... |
932 |
|
{ |
933 |
182 |
return this._conservationSelected; |
934 |
|
} |
935 |
|
|
936 |
|
|
937 |
|
|
938 |
|
|
939 |
|
@return |
940 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
941 |
110 |
public boolean getFollowHighlight()... |
942 |
|
{ |
943 |
110 |
return this._followHighlight; |
944 |
|
} |
945 |
|
|
946 |
|
|
947 |
|
|
948 |
|
|
949 |
|
@return |
950 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
951 |
110 |
public boolean getFollowSelection()... |
952 |
|
{ |
953 |
110 |
return this._followSelection; |
954 |
|
} |
955 |
|
|
956 |
|
|
957 |
|
|
958 |
|
|
959 |
|
@return |
960 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
961 |
110 |
public java.lang.String getFontName()... |
962 |
|
{ |
963 |
110 |
return this._fontName; |
964 |
|
} |
965 |
|
|
966 |
|
|
967 |
|
|
968 |
|
|
969 |
|
@return |
970 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
971 |
110 |
public int getFontSize()... |
972 |
|
{ |
973 |
110 |
return this._fontSize; |
974 |
|
} |
975 |
|
|
976 |
|
|
977 |
|
|
978 |
|
|
979 |
|
@return |
980 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
981 |
110 |
public int getFontStyle()... |
982 |
|
{ |
983 |
110 |
return this._fontStyle; |
984 |
|
} |
985 |
|
|
986 |
|
|
987 |
|
|
988 |
|
|
989 |
|
@return |
990 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
991 |
110 |
public boolean getGatheredViews()... |
992 |
|
{ |
993 |
110 |
return this._gatheredViews; |
994 |
|
} |
995 |
|
|
996 |
|
|
997 |
|
|
998 |
|
|
999 |
|
@return |
1000 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1001 |
254 |
public int getHeight()... |
1002 |
|
{ |
1003 |
254 |
return this._height; |
1004 |
|
} |
1005 |
|
|
1006 |
|
|
1007 |
|
|
1008 |
|
|
1009 |
|
@param |
1010 |
|
@throws |
1011 |
|
|
1012 |
|
@return |
1013 |
|
|
1014 |
|
|
|
|
| 60% |
Uncovered Elements: 2 (5) |
Complexity: 3 |
Complexity Density: 1 |
|
1015 |
72 |
public jalview.schemabinding.version2.HiddenColumns getHiddenColumns(... |
1016 |
|
final int index) throws java.lang.IndexOutOfBoundsException |
1017 |
|
{ |
1018 |
|
|
1019 |
72 |
if (index < 0 || index >= this._hiddenColumnsList.size()) |
1020 |
|
{ |
1021 |
0 |
throw new IndexOutOfBoundsException("getHiddenColumns: Index value '" |
1022 |
|
+ index + "' not in range [0.." |
1023 |
|
+ (this._hiddenColumnsList.size() - 1) + "]"); |
1024 |
|
} |
1025 |
|
|
1026 |
72 |
return (jalview.schemabinding.version2.HiddenColumns) _hiddenColumnsList |
1027 |
|
.get(index); |
1028 |
|
} |
1029 |
|
|
1030 |
|
|
1031 |
|
|
1032 |
|
|
1033 |
|
|
1034 |
|
|
1035 |
|
|
1036 |
|
|
1037 |
|
@return |
1038 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
1039 |
38 |
public jalview.schemabinding.version2.HiddenColumns[] getHiddenColumns()... |
1040 |
|
{ |
1041 |
38 |
jalview.schemabinding.version2.HiddenColumns[] array = new jalview.schemabinding.version2.HiddenColumns[0]; |
1042 |
38 |
return (jalview.schemabinding.version2.HiddenColumns[]) this._hiddenColumnsList |
1043 |
|
.toArray(array); |
1044 |
|
} |
1045 |
|
|
1046 |
|
|
1047 |
|
|
1048 |
|
|
1049 |
|
@return |
1050 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1051 |
132 |
public int getHiddenColumnsCount()... |
1052 |
|
{ |
1053 |
132 |
return this._hiddenColumnsList.size(); |
1054 |
|
} |
1055 |
|
|
1056 |
|
|
1057 |
|
|
1058 |
|
|
1059 |
|
|
1060 |
|
|
1061 |
|
|
1062 |
|
@return |
1063 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1064 |
179 |
public java.lang.String getId()... |
1065 |
|
{ |
1066 |
179 |
return this._id; |
1067 |
|
} |
1068 |
|
|
1069 |
|
|
1070 |
|
|
1071 |
|
|
1072 |
|
@return |
1073 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1074 |
182 |
public boolean getIgnoreGapsinConsensus()... |
1075 |
|
{ |
1076 |
182 |
return this._ignoreGapsinConsensus; |
1077 |
|
} |
1078 |
|
|
1079 |
|
|
1080 |
|
|
1081 |
|
|
1082 |
|
@return |
1083 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1084 |
60 |
public boolean getNormaliseSequenceLogo()... |
1085 |
|
{ |
1086 |
60 |
return this._normaliseSequenceLogo; |
1087 |
|
} |
1088 |
|
|
1089 |
|
|
1090 |
|
|
1091 |
|
|
1092 |
|
@return |
1093 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1094 |
110 |
public boolean getPidSelected()... |
1095 |
|
{ |
1096 |
110 |
return this._pidSelected; |
1097 |
|
} |
1098 |
|
|
1099 |
|
|
1100 |
|
|
1101 |
|
|
1102 |
|
@return |
1103 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1104 |
152 |
public int getPidThreshold()... |
1105 |
|
{ |
1106 |
152 |
return this._pidThreshold; |
1107 |
|
} |
1108 |
|
|
1109 |
|
|
1110 |
|
|
1111 |
|
|
1112 |
|
@return |
1113 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1114 |
110 |
public boolean getRenderGaps()... |
1115 |
|
{ |
1116 |
110 |
return this._renderGaps; |
1117 |
|
} |
1118 |
|
|
1119 |
|
|
1120 |
|
|
1121 |
|
|
1122 |
|
@return |
1123 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1124 |
110 |
public boolean getRightAlignIds()... |
1125 |
|
{ |
1126 |
110 |
return this._rightAlignIds; |
1127 |
|
} |
1128 |
|
|
1129 |
|
|
1130 |
|
|
1131 |
|
|
1132 |
|
@return |
1133 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1134 |
38 |
public boolean getScaleProteinAsCdna()... |
1135 |
|
{ |
1136 |
38 |
return this._scaleProteinAsCdna; |
1137 |
|
} |
1138 |
|
|
1139 |
|
|
1140 |
|
|
1141 |
|
|
1142 |
|
@return |
1143 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1144 |
182 |
public java.lang.String getSequenceSetId()... |
1145 |
|
{ |
1146 |
182 |
return this._sequenceSetId; |
1147 |
|
} |
1148 |
|
|
1149 |
|
|
1150 |
|
|
1151 |
|
|
1152 |
|
@return |
1153 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1154 |
182 |
public boolean getShowAnnotation()... |
1155 |
|
{ |
1156 |
182 |
return this._showAnnotation; |
1157 |
|
} |
1158 |
|
|
1159 |
|
|
1160 |
|
|
1161 |
|
|
1162 |
|
@return |
1163 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1164 |
110 |
public boolean getShowBoxes()... |
1165 |
|
{ |
1166 |
110 |
return this._showBoxes; |
1167 |
|
} |
1168 |
|
|
1169 |
|
|
1170 |
|
|
1171 |
|
|
1172 |
|
@return |
1173 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1174 |
110 |
public boolean getShowColourText()... |
1175 |
|
{ |
1176 |
110 |
return this._showColourText; |
1177 |
|
} |
1178 |
|
|
1179 |
|
|
1180 |
|
|
1181 |
|
|
1182 |
|
@return |
1183 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1184 |
110 |
public boolean getShowConsensusHistogram()... |
1185 |
|
{ |
1186 |
110 |
return this._showConsensusHistogram; |
1187 |
|
} |
1188 |
|
|
1189 |
|
|
1190 |
|
|
1191 |
|
|
1192 |
|
@return |
1193 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1194 |
110 |
public boolean getShowDbRefTooltip()... |
1195 |
|
{ |
1196 |
110 |
return this._showDbRefTooltip; |
1197 |
|
} |
1198 |
|
|
1199 |
|
|
1200 |
|
|
1201 |
|
|
1202 |
|
@return |
1203 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1204 |
110 |
public boolean getShowFullId()... |
1205 |
|
{ |
1206 |
110 |
return this._showFullId; |
1207 |
|
} |
1208 |
|
|
1209 |
|
|
1210 |
|
|
1211 |
|
|
1212 |
|
@return |
1213 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1214 |
110 |
public boolean getShowGroupConsensus()... |
1215 |
|
{ |
1216 |
110 |
return this._showGroupConsensus; |
1217 |
|
} |
1218 |
|
|
1219 |
|
|
1220 |
|
|
1221 |
|
|
1222 |
|
@return |
1223 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1224 |
110 |
public boolean getShowGroupConservation()... |
1225 |
|
{ |
1226 |
110 |
return this._showGroupConservation; |
1227 |
|
} |
1228 |
|
|
1229 |
|
|
1230 |
|
|
1231 |
|
|
1232 |
|
@return |
1233 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1234 |
38 |
public boolean getShowNPfeatureTooltip()... |
1235 |
|
{ |
1236 |
38 |
return this._showNPfeatureTooltip; |
1237 |
|
} |
1238 |
|
|
1239 |
|
|
1240 |
|
|
1241 |
|
|
1242 |
|
@return |
1243 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1244 |
110 |
public boolean getShowSequenceFeatures()... |
1245 |
|
{ |
1246 |
110 |
return this._showSequenceFeatures; |
1247 |
|
} |
1248 |
|
|
1249 |
|
|
1250 |
|
|
1251 |
|
|
1252 |
|
@return |
1253 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1254 |
110 |
public boolean getShowSequenceLogo()... |
1255 |
|
{ |
1256 |
110 |
return this._showSequenceLogo; |
1257 |
|
} |
1258 |
|
|
1259 |
|
|
1260 |
|
|
1261 |
|
|
1262 |
|
@return |
1263 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1264 |
110 |
public boolean getShowText()... |
1265 |
|
{ |
1266 |
110 |
return this._showText; |
1267 |
|
} |
1268 |
|
|
1269 |
|
|
1270 |
|
|
1271 |
|
|
1272 |
|
@return |
1273 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1274 |
38 |
public boolean getShowUnconserved()... |
1275 |
|
{ |
1276 |
38 |
return this._showUnconserved; |
1277 |
|
} |
1278 |
|
|
1279 |
|
|
1280 |
|
|
1281 |
|
|
1282 |
|
@return |
1283 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1284 |
110 |
public int getStartRes()... |
1285 |
|
{ |
1286 |
110 |
return this._startRes; |
1287 |
|
} |
1288 |
|
|
1289 |
|
|
1290 |
|
|
1291 |
|
|
1292 |
|
@return |
1293 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1294 |
38 |
public int getStartSeq()... |
1295 |
|
{ |
1296 |
38 |
return this._startSeq; |
1297 |
|
} |
1298 |
|
|
1299 |
|
|
1300 |
|
|
1301 |
|
|
1302 |
|
@return |
1303 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1304 |
110 |
public int getTextCol1()... |
1305 |
|
{ |
1306 |
110 |
return this._textCol1; |
1307 |
|
} |
1308 |
|
|
1309 |
|
|
1310 |
|
|
1311 |
|
|
1312 |
|
@return |
1313 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1314 |
110 |
public int getTextCol2()... |
1315 |
|
{ |
1316 |
110 |
return this._textCol2; |
1317 |
|
} |
1318 |
|
|
1319 |
|
|
1320 |
|
|
1321 |
|
|
1322 |
|
@return |
1323 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1324 |
110 |
public int getTextColThreshold()... |
1325 |
|
{ |
1326 |
110 |
return this._textColThreshold; |
1327 |
|
} |
1328 |
|
|
1329 |
|
|
1330 |
|
|
1331 |
|
|
1332 |
|
@return |
1333 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1334 |
182 |
public java.lang.String getTitle()... |
1335 |
|
{ |
1336 |
182 |
return this._title; |
1337 |
|
} |
1338 |
|
|
1339 |
|
|
1340 |
|
|
1341 |
|
|
1342 |
|
@return |
1343 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1344 |
172 |
public java.lang.String getViewName()... |
1345 |
|
{ |
1346 |
172 |
return this._viewName; |
1347 |
|
} |
1348 |
|
|
1349 |
|
|
1350 |
|
|
1351 |
|
|
1352 |
|
@return |
1353 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1354 |
254 |
public int getWidth()... |
1355 |
|
{ |
1356 |
254 |
return this._width; |
1357 |
|
} |
1358 |
|
|
1359 |
|
|
1360 |
|
|
1361 |
|
|
1362 |
|
@return |
1363 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1364 |
110 |
public boolean getWrapAlignment()... |
1365 |
|
{ |
1366 |
110 |
return this._wrapAlignment; |
1367 |
|
} |
1368 |
|
|
1369 |
|
|
1370 |
|
|
1371 |
|
|
1372 |
|
@return |
1373 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1374 |
110 |
public int getXpos()... |
1375 |
|
{ |
1376 |
110 |
return this._xpos; |
1377 |
|
} |
1378 |
|
|
1379 |
|
|
1380 |
|
|
1381 |
|
|
1382 |
|
@return |
1383 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1384 |
110 |
public int getYpos()... |
1385 |
|
{ |
1386 |
110 |
return this._ypos; |
1387 |
|
} |
1388 |
|
|
1389 |
|
|
1390 |
|
|
1391 |
|
|
1392 |
|
@return |
1393 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1394 |
110 |
public boolean hasCentreColumnLabels()... |
1395 |
|
{ |
1396 |
110 |
return this._has_centreColumnLabels; |
1397 |
|
} |
1398 |
|
|
1399 |
|
|
1400 |
|
|
1401 |
|
|
1402 |
|
@return |
1403 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1404 |
38 |
public boolean hasConsThreshold()... |
1405 |
|
{ |
1406 |
38 |
return this._has_consThreshold; |
1407 |
|
} |
1408 |
|
|
1409 |
|
|
1410 |
|
|
1411 |
|
|
1412 |
|
@return |
1413 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1414 |
38 |
public boolean hasConservationSelected()... |
1415 |
|
{ |
1416 |
38 |
return this._has_conservationSelected; |
1417 |
|
} |
1418 |
|
|
1419 |
|
|
1420 |
|
|
1421 |
|
|
1422 |
|
@return |
1423 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1424 |
110 |
public boolean hasFollowHighlight()... |
1425 |
|
{ |
1426 |
110 |
return this._has_followHighlight; |
1427 |
|
} |
1428 |
|
|
1429 |
|
|
1430 |
|
|
1431 |
|
|
1432 |
|
@return |
1433 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1434 |
110 |
public boolean hasFollowSelection()... |
1435 |
|
{ |
1436 |
110 |
return this._has_followSelection; |
1437 |
|
} |
1438 |
|
|
1439 |
|
|
1440 |
|
|
1441 |
|
|
1442 |
|
@return |
1443 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1444 |
38 |
public boolean hasFontSize()... |
1445 |
|
{ |
1446 |
38 |
return this._has_fontSize; |
1447 |
|
} |
1448 |
|
|
1449 |
|
|
1450 |
|
|
1451 |
|
|
1452 |
|
@return |
1453 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1454 |
38 |
public boolean hasFontStyle()... |
1455 |
|
{ |
1456 |
38 |
return this._has_fontStyle; |
1457 |
|
} |
1458 |
|
|
1459 |
|
|
1460 |
|
|
1461 |
|
|
1462 |
|
@return |
1463 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1464 |
38 |
public boolean hasGatheredViews()... |
1465 |
|
{ |
1466 |
38 |
return this._has_gatheredViews; |
1467 |
|
} |
1468 |
|
|
1469 |
|
|
1470 |
|
|
1471 |
|
|
1472 |
|
@return |
1473 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1474 |
38 |
public boolean hasHeight()... |
1475 |
|
{ |
1476 |
38 |
return this._has_height; |
1477 |
|
} |
1478 |
|
|
1479 |
|
|
1480 |
|
|
1481 |
|
|
1482 |
|
@return |
1483 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1484 |
110 |
public boolean hasIgnoreGapsinConsensus()... |
1485 |
|
{ |
1486 |
110 |
return this._has_ignoreGapsinConsensus; |
1487 |
|
} |
1488 |
|
|
1489 |
|
|
1490 |
|
|
1491 |
|
|
1492 |
|
@return |
1493 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1494 |
110 |
public boolean hasNormaliseSequenceLogo()... |
1495 |
|
{ |
1496 |
110 |
return this._has_normaliseSequenceLogo; |
1497 |
|
} |
1498 |
|
|
1499 |
|
|
1500 |
|
|
1501 |
|
|
1502 |
|
@return |
1503 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1504 |
38 |
public boolean hasPidSelected()... |
1505 |
|
{ |
1506 |
38 |
return this._has_pidSelected; |
1507 |
|
} |
1508 |
|
|
1509 |
|
|
1510 |
|
|
1511 |
|
|
1512 |
|
@return |
1513 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1514 |
38 |
public boolean hasPidThreshold()... |
1515 |
|
{ |
1516 |
38 |
return this._has_pidThreshold; |
1517 |
|
} |
1518 |
|
|
1519 |
|
|
1520 |
|
|
1521 |
|
|
1522 |
|
@return |
1523 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1524 |
38 |
public boolean hasRenderGaps()... |
1525 |
|
{ |
1526 |
38 |
return this._has_renderGaps; |
1527 |
|
} |
1528 |
|
|
1529 |
|
|
1530 |
|
|
1531 |
|
|
1532 |
|
@return |
1533 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1534 |
38 |
public boolean hasRightAlignIds()... |
1535 |
|
{ |
1536 |
38 |
return this._has_rightAlignIds; |
1537 |
|
} |
1538 |
|
|
1539 |
|
|
1540 |
|
|
1541 |
|
|
1542 |
|
@return |
1543 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1544 |
38 |
public boolean hasScaleProteinAsCdna()... |
1545 |
|
{ |
1546 |
38 |
return this._has_scaleProteinAsCdna; |
1547 |
|
} |
1548 |
|
|
1549 |
|
|
1550 |
|
|
1551 |
|
|
1552 |
|
@return |
1553 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1554 |
38 |
public boolean hasShowAnnotation()... |
1555 |
|
{ |
1556 |
38 |
return this._has_showAnnotation; |
1557 |
|
} |
1558 |
|
|
1559 |
|
|
1560 |
|
|
1561 |
|
|
1562 |
|
@return |
1563 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1564 |
38 |
public boolean hasShowBoxes()... |
1565 |
|
{ |
1566 |
38 |
return this._has_showBoxes; |
1567 |
|
} |
1568 |
|
|
1569 |
|
|
1570 |
|
|
1571 |
|
|
1572 |
|
@return |
1573 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1574 |
38 |
public boolean hasShowColourText()... |
1575 |
|
{ |
1576 |
38 |
return this._has_showColourText; |
1577 |
|
} |
1578 |
|
|
1579 |
|
|
1580 |
|
|
1581 |
|
|
1582 |
|
@return |
1583 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1584 |
110 |
public boolean hasShowConsensusHistogram()... |
1585 |
|
{ |
1586 |
110 |
return this._has_showConsensusHistogram; |
1587 |
|
} |
1588 |
|
|
1589 |
|
|
1590 |
|
|
1591 |
|
|
1592 |
|
@return |
1593 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1594 |
110 |
public boolean hasShowDbRefTooltip()... |
1595 |
|
{ |
1596 |
110 |
return this._has_showDbRefTooltip; |
1597 |
|
} |
1598 |
|
|
1599 |
|
|
1600 |
|
|
1601 |
|
|
1602 |
|
@return |
1603 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1604 |
38 |
public boolean hasShowFullId()... |
1605 |
|
{ |
1606 |
38 |
return this._has_showFullId; |
1607 |
|
} |
1608 |
|
|
1609 |
|
|
1610 |
|
|
1611 |
|
|
1612 |
|
@return |
1613 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1614 |
110 |
public boolean hasShowGroupConsensus()... |
1615 |
|
{ |
1616 |
110 |
return this._has_showGroupConsensus; |
1617 |
|
} |
1618 |
|
|
1619 |
|
|
1620 |
|
|
1621 |
|
|
1622 |
|
@return |
1623 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1624 |
110 |
public boolean hasShowGroupConservation()... |
1625 |
|
{ |
1626 |
110 |
return this._has_showGroupConservation; |
1627 |
|
} |
1628 |
|
|
1629 |
|
|
1630 |
|
|
1631 |
|
|
1632 |
|
@return |
1633 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1634 |
182 |
public boolean hasShowNPfeatureTooltip()... |
1635 |
|
{ |
1636 |
182 |
return this._has_showNPfeatureTooltip; |
1637 |
|
} |
1638 |
|
|
1639 |
|
|
1640 |
|
|
1641 |
|
|
1642 |
|
@return |
1643 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1644 |
38 |
public boolean hasShowSequenceFeatures()... |
1645 |
|
{ |
1646 |
38 |
return this._has_showSequenceFeatures; |
1647 |
|
} |
1648 |
|
|
1649 |
|
|
1650 |
|
|
1651 |
|
|
1652 |
|
@return |
1653 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1654 |
110 |
public boolean hasShowSequenceLogo()... |
1655 |
|
{ |
1656 |
110 |
return this._has_showSequenceLogo; |
1657 |
|
} |
1658 |
|
|
1659 |
|
|
1660 |
|
|
1661 |
|
|
1662 |
|
@return |
1663 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1664 |
38 |
public boolean hasShowText()... |
1665 |
|
{ |
1666 |
38 |
return this._has_showText; |
1667 |
|
} |
1668 |
|
|
1669 |
|
|
1670 |
|
|
1671 |
|
|
1672 |
|
@return |
1673 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1674 |
110 |
public boolean hasShowUnconserved()... |
1675 |
|
{ |
1676 |
110 |
return this._has_showUnconserved; |
1677 |
|
} |
1678 |
|
|
1679 |
|
|
1680 |
|
|
1681 |
|
|
1682 |
|
@return |
1683 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1684 |
38 |
public boolean hasStartRes()... |
1685 |
|
{ |
1686 |
38 |
return this._has_startRes; |
1687 |
|
} |
1688 |
|
|
1689 |
|
|
1690 |
|
|
1691 |
|
|
1692 |
|
@return |
1693 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1694 |
38 |
public boolean hasStartSeq()... |
1695 |
|
{ |
1696 |
38 |
return this._has_startSeq; |
1697 |
|
} |
1698 |
|
|
1699 |
|
|
1700 |
|
|
1701 |
|
|
1702 |
|
@return |
1703 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1704 |
38 |
public boolean hasTextCol1()... |
1705 |
|
{ |
1706 |
38 |
return this._has_textCol1; |
1707 |
|
} |
1708 |
|
|
1709 |
|
|
1710 |
|
|
1711 |
|
|
1712 |
|
@return |
1713 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1714 |
38 |
public boolean hasTextCol2()... |
1715 |
|
{ |
1716 |
38 |
return this._has_textCol2; |
1717 |
|
} |
1718 |
|
|
1719 |
|
|
1720 |
|
|
1721 |
|
|
1722 |
|
@return |
1723 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1724 |
38 |
public boolean hasTextColThreshold()... |
1725 |
|
{ |
1726 |
38 |
return this._has_textColThreshold; |
1727 |
|
} |
1728 |
|
|
1729 |
|
|
1730 |
|
|
1731 |
|
|
1732 |
|
@return |
1733 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1734 |
38 |
public boolean hasWidth()... |
1735 |
|
{ |
1736 |
38 |
return this._has_width; |
1737 |
|
} |
1738 |
|
|
1739 |
|
|
1740 |
|
|
1741 |
|
|
1742 |
|
@return |
1743 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1744 |
38 |
public boolean hasWrapAlignment()... |
1745 |
|
{ |
1746 |
38 |
return this._has_wrapAlignment; |
1747 |
|
} |
1748 |
|
|
1749 |
|
|
1750 |
|
|
1751 |
|
|
1752 |
|
@return |
1753 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1754 |
38 |
public boolean hasXpos()... |
1755 |
|
{ |
1756 |
38 |
return this._has_xpos; |
1757 |
|
} |
1758 |
|
|
1759 |
|
|
1760 |
|
|
1761 |
|
|
1762 |
|
@return |
1763 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1764 |
38 |
public boolean hasYpos()... |
1765 |
|
{ |
1766 |
38 |
return this._has_ypos; |
1767 |
|
} |
1768 |
|
|
1769 |
|
|
1770 |
|
|
1771 |
|
|
1772 |
|
@return |
1773 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1774 |
0 |
public boolean isCentreColumnLabels()... |
1775 |
|
{ |
1776 |
0 |
return this._centreColumnLabels; |
1777 |
|
} |
1778 |
|
|
1779 |
|
|
1780 |
|
|
1781 |
|
|
1782 |
|
@return |
1783 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1784 |
0 |
public boolean isConservationSelected()... |
1785 |
|
{ |
1786 |
0 |
return this._conservationSelected; |
1787 |
|
} |
1788 |
|
|
1789 |
|
|
1790 |
|
|
1791 |
|
|
1792 |
|
@return |
1793 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1794 |
0 |
public boolean isFollowHighlight()... |
1795 |
|
{ |
1796 |
0 |
return this._followHighlight; |
1797 |
|
} |
1798 |
|
|
1799 |
|
|
1800 |
|
|
1801 |
|
|
1802 |
|
@return |
1803 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1804 |
0 |
public boolean isFollowSelection()... |
1805 |
|
{ |
1806 |
0 |
return this._followSelection; |
1807 |
|
} |
1808 |
|
|
1809 |
|
|
1810 |
|
|
1811 |
|
|
1812 |
|
@return |
1813 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1814 |
0 |
public boolean isGatheredViews()... |
1815 |
|
{ |
1816 |
0 |
return this._gatheredViews; |
1817 |
|
} |
1818 |
|
|
1819 |
|
|
1820 |
|
|
1821 |
|
|
1822 |
|
@return |
1823 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1824 |
0 |
public boolean isIgnoreGapsinConsensus()... |
1825 |
|
{ |
1826 |
0 |
return this._ignoreGapsinConsensus; |
1827 |
|
} |
1828 |
|
|
1829 |
|
|
1830 |
|
|
1831 |
|
|
1832 |
|
@return |
1833 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1834 |
0 |
public boolean isNormaliseSequenceLogo()... |
1835 |
|
{ |
1836 |
0 |
return this._normaliseSequenceLogo; |
1837 |
|
} |
1838 |
|
|
1839 |
|
|
1840 |
|
|
1841 |
|
|
1842 |
|
@return |
1843 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1844 |
0 |
public boolean isPidSelected()... |
1845 |
|
{ |
1846 |
0 |
return this._pidSelected; |
1847 |
|
} |
1848 |
|
|
1849 |
|
|
1850 |
|
|
1851 |
|
|
1852 |
|
@return |
1853 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1854 |
0 |
public boolean isRenderGaps()... |
1855 |
|
{ |
1856 |
0 |
return this._renderGaps; |
1857 |
|
} |
1858 |
|
|
1859 |
|
|
1860 |
|
|
1861 |
|
|
1862 |
|
@return |
1863 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1864 |
0 |
public boolean isRightAlignIds()... |
1865 |
|
{ |
1866 |
0 |
return this._rightAlignIds; |
1867 |
|
} |
1868 |
|
|
1869 |
|
|
1870 |
|
|
1871 |
|
|
1872 |
|
@return |
1873 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1874 |
72 |
public boolean isScaleProteinAsCdna()... |
1875 |
|
{ |
1876 |
72 |
return this._scaleProteinAsCdna; |
1877 |
|
} |
1878 |
|
|
1879 |
|
|
1880 |
|
|
1881 |
|
|
1882 |
|
@return |
1883 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1884 |
0 |
public boolean isShowAnnotation()... |
1885 |
|
{ |
1886 |
0 |
return this._showAnnotation; |
1887 |
|
} |
1888 |
|
|
1889 |
|
|
1890 |
|
|
1891 |
|
|
1892 |
|
@return |
1893 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1894 |
0 |
public boolean isShowBoxes()... |
1895 |
|
{ |
1896 |
0 |
return this._showBoxes; |
1897 |
|
} |
1898 |
|
|
1899 |
|
|
1900 |
|
|
1901 |
|
|
1902 |
|
@return |
1903 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1904 |
0 |
public boolean isShowColourText()... |
1905 |
|
{ |
1906 |
0 |
return this._showColourText; |
1907 |
|
} |
1908 |
|
|
1909 |
|
|
1910 |
|
|
1911 |
|
|
1912 |
|
@return |
1913 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1914 |
0 |
public boolean isShowConsensusHistogram()... |
1915 |
|
{ |
1916 |
0 |
return this._showConsensusHistogram; |
1917 |
|
} |
1918 |
|
|
1919 |
|
|
1920 |
|
|
1921 |
|
|
1922 |
|
@return |
1923 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1924 |
0 |
public boolean isShowDbRefTooltip()... |
1925 |
|
{ |
1926 |
0 |
return this._showDbRefTooltip; |
1927 |
|
} |
1928 |
|
|
1929 |
|
|
1930 |
|
|
1931 |
|
|
1932 |
|
@return |
1933 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1934 |
0 |
public boolean isShowFullId()... |
1935 |
|
{ |
1936 |
0 |
return this._showFullId; |
1937 |
|
} |
1938 |
|
|
1939 |
|
|
1940 |
|
|
1941 |
|
|
1942 |
|
@return |
1943 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1944 |
0 |
public boolean isShowGroupConsensus()... |
1945 |
|
{ |
1946 |
0 |
return this._showGroupConsensus; |
1947 |
|
} |
1948 |
|
|
1949 |
|
|
1950 |
|
|
1951 |
|
|
1952 |
|
@return |
1953 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1954 |
0 |
public boolean isShowGroupConservation()... |
1955 |
|
{ |
1956 |
0 |
return this._showGroupConservation; |
1957 |
|
} |
1958 |
|
|
1959 |
|
|
1960 |
|
|
1961 |
|
|
1962 |
|
@return |
1963 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1964 |
0 |
public boolean isShowNPfeatureTooltip()... |
1965 |
|
{ |
1966 |
0 |
return this._showNPfeatureTooltip; |
1967 |
|
} |
1968 |
|
|
1969 |
|
|
1970 |
|
|
1971 |
|
|
1972 |
|
@return |
1973 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1974 |
0 |
public boolean isShowSequenceFeatures()... |
1975 |
|
{ |
1976 |
0 |
return this._showSequenceFeatures; |
1977 |
|
} |
1978 |
|
|
1979 |
|
|
1980 |
|
|
1981 |
|
|
1982 |
|
@return |
1983 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1984 |
0 |
public boolean isShowSequenceLogo()... |
1985 |
|
{ |
1986 |
0 |
return this._showSequenceLogo; |
1987 |
|
} |
1988 |
|
|
1989 |
|
|
1990 |
|
|
1991 |
|
|
1992 |
|
@return |
1993 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1994 |
0 |
public boolean isShowText()... |
1995 |
|
{ |
1996 |
0 |
return this._showText; |
1997 |
|
} |
1998 |
|
|
1999 |
|
|
2000 |
|
|
2001 |
|
|
2002 |
|
@return |
2003 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2004 |
72 |
public boolean isShowUnconserved()... |
2005 |
|
{ |
2006 |
72 |
return this._showUnconserved; |
2007 |
|
} |
2008 |
|
|
2009 |
|
|
2010 |
|
|
2011 |
|
|
2012 |
|
@return |
2013 |
|
|
|
|
| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
2014 |
0 |
public boolean isValid()... |
2015 |
|
{ |
2016 |
0 |
try |
2017 |
|
{ |
2018 |
0 |
validate(); |
2019 |
|
} catch (org.exolab.castor.xml.ValidationException vex) |
2020 |
|
{ |
2021 |
0 |
return false; |
2022 |
|
} |
2023 |
0 |
return true; |
2024 |
|
} |
2025 |
|
|
2026 |
|
|
2027 |
|
|
2028 |
|
|
2029 |
|
@return |
2030 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2031 |
0 |
public boolean isWrapAlignment()... |
2032 |
|
{ |
2033 |
0 |
return this._wrapAlignment; |
2034 |
|
} |
2035 |
|
|
2036 |
|
|
2037 |
|
|
2038 |
|
|
2039 |
|
@param |
2040 |
|
@throws |
2041 |
|
|
2042 |
|
|
2043 |
|
@throws |
2044 |
|
|
2045 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2046 |
0 |
public void marshal(final java.io.Writer out)... |
2047 |
|
throws org.exolab.castor.xml.MarshalException, |
2048 |
|
org.exolab.castor.xml.ValidationException |
2049 |
|
{ |
2050 |
0 |
Marshaller.marshal(this, out); |
2051 |
|
} |
2052 |
|
|
2053 |
|
|
2054 |
|
|
2055 |
|
|
2056 |
|
@param |
2057 |
|
@throws |
2058 |
|
|
2059 |
|
@throws |
2060 |
|
|
2061 |
|
@throws |
2062 |
|
|
2063 |
|
|
2064 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2065 |
0 |
public void marshal(final org.xml.sax.ContentHandler handler)... |
2066 |
|
throws java.io.IOException, |
2067 |
|
org.exolab.castor.xml.MarshalException, |
2068 |
|
org.exolab.castor.xml.ValidationException |
2069 |
|
{ |
2070 |
0 |
Marshaller.marshal(this, handler); |
2071 |
|
} |
2072 |
|
|
2073 |
|
|
2074 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2075 |
0 |
public void removeAllCalcIdParam()... |
2076 |
|
{ |
2077 |
0 |
this._calcIdParamList.clear(); |
2078 |
|
} |
2079 |
|
|
2080 |
|
|
2081 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2082 |
0 |
public void removeAllHiddenColumns()... |
2083 |
|
{ |
2084 |
0 |
this._hiddenColumnsList.clear(); |
2085 |
|
} |
2086 |
|
|
2087 |
|
|
2088 |
|
|
2089 |
|
|
2090 |
|
@param |
2091 |
|
@return |
2092 |
|
|
|
|
| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2093 |
0 |
public boolean removeCalcIdParam(... |
2094 |
|
final jalview.schemabinding.version2.CalcIdParam vCalcIdParam) |
2095 |
|
{ |
2096 |
0 |
boolean removed = _calcIdParamList.remove(vCalcIdParam); |
2097 |
0 |
return removed; |
2098 |
|
} |
2099 |
|
|
2100 |
|
|
2101 |
|
|
2102 |
|
|
2103 |
|
@param |
2104 |
|
@return |
2105 |
|
|
|
|
| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2106 |
0 |
public jalview.schemabinding.version2.CalcIdParam removeCalcIdParamAt(... |
2107 |
|
final int index) |
2108 |
|
{ |
2109 |
0 |
java.lang.Object obj = this._calcIdParamList.remove(index); |
2110 |
0 |
return (jalview.schemabinding.version2.CalcIdParam) obj; |
2111 |
|
} |
2112 |
|
|
2113 |
|
|
2114 |
|
|
2115 |
|
|
2116 |
|
@param |
2117 |
|
@return |
2118 |
|
|
|
|
| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2119 |
0 |
public boolean removeHiddenColumns(... |
2120 |
|
final jalview.schemabinding.version2.HiddenColumns vHiddenColumns) |
2121 |
|
{ |
2122 |
0 |
boolean removed = _hiddenColumnsList.remove(vHiddenColumns); |
2123 |
0 |
return removed; |
2124 |
|
} |
2125 |
|
|
2126 |
|
|
2127 |
|
|
2128 |
|
|
2129 |
|
@param |
2130 |
|
@return |
2131 |
|
|
|
|
| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2132 |
0 |
public jalview.schemabinding.version2.HiddenColumns removeHiddenColumnsAt(... |
2133 |
|
final int index) |
2134 |
|
{ |
2135 |
0 |
java.lang.Object obj = this._hiddenColumnsList.remove(index); |
2136 |
0 |
return (jalview.schemabinding.version2.HiddenColumns) obj; |
2137 |
|
} |
2138 |
|
|
2139 |
|
|
2140 |
|
|
2141 |
|
|
2142 |
|
@param |
2143 |
|
|
2144 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2145 |
2 |
public void setAnnotationColours(... |
2146 |
|
final jalview.schemabinding.version2.AnnotationColours annotationColours) |
2147 |
|
{ |
2148 |
2 |
this._annotationColours = annotationColours; |
2149 |
|
} |
2150 |
|
|
2151 |
|
|
2152 |
|
|
2153 |
|
|
2154 |
|
@param |
2155 |
|
|
2156 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2157 |
91 |
public void setBgColour(final java.lang.String bgColour)... |
2158 |
|
{ |
2159 |
91 |
this._bgColour = bgColour; |
2160 |
|
} |
2161 |
|
|
2162 |
|
|
2163 |
|
|
2164 |
|
|
2165 |
|
@param |
2166 |
|
@param |
2167 |
|
@throws |
2168 |
|
|
2169 |
|
|
|
|
| 0% |
Uncovered Elements: 5 (5) |
Complexity: 3 |
Complexity Density: 1 |
|
2170 |
0 |
public void setCalcIdParam(final int index,... |
2171 |
|
final jalview.schemabinding.version2.CalcIdParam vCalcIdParam) |
2172 |
|
throws java.lang.IndexOutOfBoundsException |
2173 |
|
{ |
2174 |
|
|
2175 |
0 |
if (index < 0 || index >= this._calcIdParamList.size()) |
2176 |
|
{ |
2177 |
0 |
throw new IndexOutOfBoundsException("setCalcIdParam: Index value '" |
2178 |
|
+ index + "' not in range [0.." |
2179 |
|
+ (this._calcIdParamList.size() - 1) + "]"); |
2180 |
|
} |
2181 |
|
|
2182 |
0 |
this._calcIdParamList.set(index, vCalcIdParam); |
2183 |
|
} |
2184 |
|
|
2185 |
|
|
2186 |
|
|
2187 |
|
|
2188 |
|
@param |
2189 |
|
|
|
|
| 0% |
Uncovered Elements: 5 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
|
2190 |
0 |
public void setCalcIdParam(... |
2191 |
|
final jalview.schemabinding.version2.CalcIdParam[] vCalcIdParamArray) |
2192 |
|
{ |
2193 |
|
|
2194 |
0 |
_calcIdParamList.clear(); |
2195 |
|
|
2196 |
0 |
for (int i = 0; i < vCalcIdParamArray.length; i++) |
2197 |
|
{ |
2198 |
0 |
this._calcIdParamList.add(vCalcIdParamArray[i]); |
2199 |
|
} |
2200 |
|
} |
2201 |
|
|
2202 |
|
|
2203 |
|
|
2204 |
|
|
2205 |
|
@param |
2206 |
|
|
2207 |
|
|
|
|
| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2208 |
0 |
public void setCentreColumnLabels(final boolean centreColumnLabels)... |
2209 |
|
{ |
2210 |
0 |
this._centreColumnLabels = centreColumnLabels; |
2211 |
0 |
this._has_centreColumnLabels = true; |
2212 |
|
} |
2213 |
|
|
2214 |
|
|
2215 |
|
|
2216 |
|
|
2217 |
|
|
2218 |
|
|
2219 |
|
|
2220 |
|
@param |
2221 |
|
|
2222 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2223 |
0 |
public void setComplementId(final java.lang.String complementId)... |
2224 |
|
{ |
2225 |
0 |
this._complementId = complementId; |
2226 |
|
} |
2227 |
|
|
2228 |
|
|
2229 |
|
|
2230 |
|
|
2231 |
|
@param |
2232 |
|
|
2233 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2234 |
3 |
public void setConsThreshold(final int consThreshold)... |
2235 |
|
{ |
2236 |
3 |
this._consThreshold = consThreshold; |
2237 |
3 |
this._has_consThreshold = true; |
2238 |
|
} |
2239 |
|
|
2240 |
|
|
2241 |
|
|
2242 |
|
|
2243 |
|
@param |
2244 |
|
|
2245 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2246 |
91 |
public void setConservationSelected(final boolean conservationSelected)... |
2247 |
|
{ |
2248 |
91 |
this._conservationSelected = conservationSelected; |
2249 |
91 |
this._has_conservationSelected = true; |
2250 |
|
} |
2251 |
|
|
2252 |
|
|
2253 |
|
|
2254 |
|
|
2255 |
|
@param |
2256 |
|
|
2257 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2258 |
91 |
public void setFollowHighlight(final boolean followHighlight)... |
2259 |
|
{ |
2260 |
91 |
this._followHighlight = followHighlight; |
2261 |
91 |
this._has_followHighlight = true; |
2262 |
|
} |
2263 |
|
|
2264 |
|
|
2265 |
|
|
2266 |
|
|
2267 |
|
@param |
2268 |
|
|
2269 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2270 |
91 |
public void setFollowSelection(final boolean followSelection)... |
2271 |
|
{ |
2272 |
91 |
this._followSelection = followSelection; |
2273 |
91 |
this._has_followSelection = true; |
2274 |
|
} |
2275 |
|
|
2276 |
|
|
2277 |
|
|
2278 |
|
|
2279 |
|
@param |
2280 |
|
|
2281 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2282 |
91 |
public void setFontName(final java.lang.String fontName)... |
2283 |
|
{ |
2284 |
91 |
this._fontName = fontName; |
2285 |
|
} |
2286 |
|
|
2287 |
|
|
2288 |
|
|
2289 |
|
|
2290 |
|
@param |
2291 |
|
|
2292 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2293 |
91 |
public void setFontSize(final int fontSize)... |
2294 |
|
{ |
2295 |
91 |
this._fontSize = fontSize; |
2296 |
91 |
this._has_fontSize = true; |
2297 |
|
} |
2298 |
|
|
2299 |
|
|
2300 |
|
|
2301 |
|
|
2302 |
|
@param |
2303 |
|
|
2304 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2305 |
91 |
public void setFontStyle(final int fontStyle)... |
2306 |
|
{ |
2307 |
91 |
this._fontStyle = fontStyle; |
2308 |
91 |
this._has_fontStyle = true; |
2309 |
|
} |
2310 |
|
|
2311 |
|
|
2312 |
|
|
2313 |
|
|
2314 |
|
@param |
2315 |
|
|
2316 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2317 |
91 |
public void setGatheredViews(final boolean gatheredViews)... |
2318 |
|
{ |
2319 |
91 |
this._gatheredViews = gatheredViews; |
2320 |
91 |
this._has_gatheredViews = true; |
2321 |
|
} |
2322 |
|
|
2323 |
|
|
2324 |
|
|
2325 |
|
|
2326 |
|
@param |
2327 |
|
|
2328 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2329 |
91 |
public void setHeight(final int height)... |
2330 |
|
{ |
2331 |
91 |
this._height = height; |
2332 |
91 |
this._has_height = true; |
2333 |
|
} |
2334 |
|
|
2335 |
|
|
2336 |
|
|
2337 |
|
|
2338 |
|
@param |
2339 |
|
@param |
2340 |
|
@throws |
2341 |
|
|
2342 |
|
|
|
|
| 0% |
Uncovered Elements: 5 (5) |
Complexity: 3 |
Complexity Density: 1 |
|
2343 |
0 |
public void setHiddenColumns(final int index,... |
2344 |
|
final jalview.schemabinding.version2.HiddenColumns vHiddenColumns) |
2345 |
|
throws java.lang.IndexOutOfBoundsException |
2346 |
|
{ |
2347 |
|
|
2348 |
0 |
if (index < 0 || index >= this._hiddenColumnsList.size()) |
2349 |
|
{ |
2350 |
0 |
throw new IndexOutOfBoundsException("setHiddenColumns: Index value '" |
2351 |
|
+ index + "' not in range [0.." |
2352 |
|
+ (this._hiddenColumnsList.size() - 1) + "]"); |
2353 |
|
} |
2354 |
|
|
2355 |
0 |
this._hiddenColumnsList.set(index, vHiddenColumns); |
2356 |
|
} |
2357 |
|
|
2358 |
|
|
2359 |
|
|
2360 |
|
|
2361 |
|
@param |
2362 |
|
|
|
|
| 0% |
Uncovered Elements: 5 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
|
2363 |
0 |
public void setHiddenColumns(... |
2364 |
|
final jalview.schemabinding.version2.HiddenColumns[] vHiddenColumnsArray) |
2365 |
|
{ |
2366 |
|
|
2367 |
0 |
_hiddenColumnsList.clear(); |
2368 |
|
|
2369 |
0 |
for (int i = 0; i < vHiddenColumnsArray.length; i++) |
2370 |
|
{ |
2371 |
0 |
this._hiddenColumnsList.add(vHiddenColumnsArray[i]); |
2372 |
|
} |
2373 |
|
} |
2374 |
|
|
2375 |
|
|
2376 |
|
|
2377 |
|
|
2378 |
|
|
2379 |
|
|
2380 |
|
|
2381 |
|
@param |
2382 |
|
|
2383 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2384 |
94 |
public void setId(final java.lang.String id)... |
2385 |
|
{ |
2386 |
94 |
this._id = id; |
2387 |
|
} |
2388 |
|
|
2389 |
|
|
2390 |
|
|
2391 |
|
|
2392 |
|
@param |
2393 |
|
|
2394 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2395 |
91 |
public void setIgnoreGapsinConsensus(final boolean ignoreGapsinConsensus)... |
2396 |
|
{ |
2397 |
91 |
this._ignoreGapsinConsensus = ignoreGapsinConsensus; |
2398 |
91 |
this._has_ignoreGapsinConsensus = true; |
2399 |
|
} |
2400 |
|
|
2401 |
|
|
2402 |
|
|
2403 |
|
|
2404 |
|
@param |
2405 |
|
|
2406 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2407 |
41 |
public void setNormaliseSequenceLogo(final boolean normaliseSequenceLogo)... |
2408 |
|
{ |
2409 |
41 |
this._normaliseSequenceLogo = normaliseSequenceLogo; |
2410 |
41 |
this._has_normaliseSequenceLogo = true; |
2411 |
|
} |
2412 |
|
|
2413 |
|
|
2414 |
|
|
2415 |
|
|
2416 |
|
@param |
2417 |
|
|
2418 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2419 |
91 |
public void setPidSelected(final boolean pidSelected)... |
2420 |
|
{ |
2421 |
91 |
this._pidSelected = pidSelected; |
2422 |
91 |
this._has_pidSelected = true; |
2423 |
|
} |
2424 |
|
|
2425 |
|
|
2426 |
|
|
2427 |
|
|
2428 |
|
@param |
2429 |
|
|
2430 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2431 |
9 |
public void setPidThreshold(final int pidThreshold)... |
2432 |
|
{ |
2433 |
9 |
this._pidThreshold = pidThreshold; |
2434 |
9 |
this._has_pidThreshold = true; |
2435 |
|
} |
2436 |
|
|
2437 |
|
|
2438 |
|
|
2439 |
|
|
2440 |
|
@param |
2441 |
|
|
2442 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2443 |
91 |
public void setRenderGaps(final boolean renderGaps)... |
2444 |
|
{ |
2445 |
91 |
this._renderGaps = renderGaps; |
2446 |
91 |
this._has_renderGaps = true; |
2447 |
|
} |
2448 |
|
|
2449 |
|
|
2450 |
|
|
2451 |
|
|
2452 |
|
@param |
2453 |
|
|
2454 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2455 |
91 |
public void setRightAlignIds(final boolean rightAlignIds)... |
2456 |
|
{ |
2457 |
91 |
this._rightAlignIds = rightAlignIds; |
2458 |
91 |
this._has_rightAlignIds = true; |
2459 |
|
} |
2460 |
|
|
2461 |
|
|
2462 |
|
|
2463 |
|
|
2464 |
|
@param |
2465 |
|
|
2466 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2467 |
41 |
public void setScaleProteinAsCdna(final boolean scaleProteinAsCdna)... |
2468 |
|
{ |
2469 |
41 |
this._scaleProteinAsCdna = scaleProteinAsCdna; |
2470 |
41 |
this._has_scaleProteinAsCdna = true; |
2471 |
|
} |
2472 |
|
|
2473 |
|
|
2474 |
|
|
2475 |
|
|
2476 |
|
@param |
2477 |
|
|
2478 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2479 |
91 |
public void setSequenceSetId(final java.lang.String sequenceSetId)... |
2480 |
|
{ |
2481 |
91 |
this._sequenceSetId = sequenceSetId; |
2482 |
|
} |
2483 |
|
|
2484 |
|
|
2485 |
|
|
2486 |
|
|
2487 |
|
@param |
2488 |
|
|
2489 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2490 |
91 |
public void setShowAnnotation(final boolean showAnnotation)... |
2491 |
|
{ |
2492 |
91 |
this._showAnnotation = showAnnotation; |
2493 |
91 |
this._has_showAnnotation = true; |
2494 |
|
} |
2495 |
|
|
2496 |
|
|
2497 |
|
|
2498 |
|
|
2499 |
|
@param |
2500 |
|
|
2501 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2502 |
91 |
public void setShowBoxes(final boolean showBoxes)... |
2503 |
|
{ |
2504 |
91 |
this._showBoxes = showBoxes; |
2505 |
91 |
this._has_showBoxes = true; |
2506 |
|
} |
2507 |
|
|
2508 |
|
|
2509 |
|
|
2510 |
|
|
2511 |
|
@param |
2512 |
|
|
2513 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2514 |
91 |
public void setShowColourText(final boolean showColourText)... |
2515 |
|
{ |
2516 |
91 |
this._showColourText = showColourText; |
2517 |
91 |
this._has_showColourText = true; |
2518 |
|
} |
2519 |
|
|
2520 |
|
|
2521 |
|
|
2522 |
|
|
2523 |
|
@param |
2524 |
|
|
2525 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2526 |
91 |
public void setShowConsensusHistogram(final boolean showConsensusHistogram)... |
2527 |
|
{ |
2528 |
91 |
this._showConsensusHistogram = showConsensusHistogram; |
2529 |
91 |
this._has_showConsensusHistogram = true; |
2530 |
|
} |
2531 |
|
|
2532 |
|
|
2533 |
|
|
2534 |
|
|
2535 |
|
@param |
2536 |
|
|
2537 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2538 |
91 |
public void setShowDbRefTooltip(final boolean showDbRefTooltip)... |
2539 |
|
{ |
2540 |
91 |
this._showDbRefTooltip = showDbRefTooltip; |
2541 |
91 |
this._has_showDbRefTooltip = true; |
2542 |
|
} |
2543 |
|
|
2544 |
|
|
2545 |
|
|
2546 |
|
|
2547 |
|
@param |
2548 |
|
|
2549 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2550 |
91 |
public void setShowFullId(final boolean showFullId)... |
2551 |
|
{ |
2552 |
91 |
this._showFullId = showFullId; |
2553 |
91 |
this._has_showFullId = true; |
2554 |
|
} |
2555 |
|
|
2556 |
|
|
2557 |
|
|
2558 |
|
|
2559 |
|
@param |
2560 |
|
|
2561 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2562 |
91 |
public void setShowGroupConsensus(final boolean showGroupConsensus)... |
2563 |
|
{ |
2564 |
91 |
this._showGroupConsensus = showGroupConsensus; |
2565 |
91 |
this._has_showGroupConsensus = true; |
2566 |
|
} |
2567 |
|
|
2568 |
|
|
2569 |
|
|
2570 |
|
|
2571 |
|
@param |
2572 |
|
|
2573 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2574 |
91 |
public void setShowGroupConservation(final boolean showGroupConservation)... |
2575 |
|
{ |
2576 |
91 |
this._showGroupConservation = showGroupConservation; |
2577 |
91 |
this._has_showGroupConservation = true; |
2578 |
|
} |
2579 |
|
|
2580 |
|
|
2581 |
|
|
2582 |
|
|
2583 |
|
@param |
2584 |
|
|
2585 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2586 |
91 |
public void setShowNPfeatureTooltip(final boolean showNPfeatureTooltip)... |
2587 |
|
{ |
2588 |
91 |
this._showNPfeatureTooltip = showNPfeatureTooltip; |
2589 |
91 |
this._has_showNPfeatureTooltip = true; |
2590 |
|
} |
2591 |
|
|
2592 |
|
|
2593 |
|
|
2594 |
|
|
2595 |
|
@param |
2596 |
|
|
2597 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2598 |
91 |
public void setShowSequenceFeatures(final boolean showSequenceFeatures)... |
2599 |
|
{ |
2600 |
91 |
this._showSequenceFeatures = showSequenceFeatures; |
2601 |
91 |
this._has_showSequenceFeatures = true; |
2602 |
|
} |
2603 |
|
|
2604 |
|
|
2605 |
|
|
2606 |
|
|
2607 |
|
@param |
2608 |
|
|
2609 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2610 |
91 |
public void setShowSequenceLogo(final boolean showSequenceLogo)... |
2611 |
|
{ |
2612 |
91 |
this._showSequenceLogo = showSequenceLogo; |
2613 |
91 |
this._has_showSequenceLogo = true; |
2614 |
|
} |
2615 |
|
|
2616 |
|
|
2617 |
|
|
2618 |
|
|
2619 |
|
@param |
2620 |
|
|
2621 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2622 |
91 |
public void setShowText(final boolean showText)... |
2623 |
|
{ |
2624 |
91 |
this._showText = showText; |
2625 |
91 |
this._has_showText = true; |
2626 |
|
} |
2627 |
|
|
2628 |
|
|
2629 |
|
|
2630 |
|
|
2631 |
|
@param |
2632 |
|
|
2633 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2634 |
91 |
public void setShowUnconserved(final boolean showUnconserved)... |
2635 |
|
{ |
2636 |
91 |
this._showUnconserved = showUnconserved; |
2637 |
91 |
this._has_showUnconserved = true; |
2638 |
|
} |
2639 |
|
|
2640 |
|
|
2641 |
|
|
2642 |
|
|
2643 |
|
@param |
2644 |
|
|
2645 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2646 |
91 |
public void setStartRes(final int startRes)... |
2647 |
|
{ |
2648 |
91 |
this._startRes = startRes; |
2649 |
91 |
this._has_startRes = true; |
2650 |
|
} |
2651 |
|
|
2652 |
|
|
2653 |
|
|
2654 |
|
|
2655 |
|
@param |
2656 |
|
|
2657 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2658 |
91 |
public void setStartSeq(final int startSeq)... |
2659 |
|
{ |
2660 |
91 |
this._startSeq = startSeq; |
2661 |
91 |
this._has_startSeq = true; |
2662 |
|
} |
2663 |
|
|
2664 |
|
|
2665 |
|
|
2666 |
|
|
2667 |
|
@param |
2668 |
|
|
2669 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2670 |
91 |
public void setTextCol1(final int textCol1)... |
2671 |
|
{ |
2672 |
91 |
this._textCol1 = textCol1; |
2673 |
91 |
this._has_textCol1 = true; |
2674 |
|
} |
2675 |
|
|
2676 |
|
|
2677 |
|
|
2678 |
|
|
2679 |
|
@param |
2680 |
|
|
2681 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2682 |
91 |
public void setTextCol2(final int textCol2)... |
2683 |
|
{ |
2684 |
91 |
this._textCol2 = textCol2; |
2685 |
91 |
this._has_textCol2 = true; |
2686 |
|
} |
2687 |
|
|
2688 |
|
|
2689 |
|
|
2690 |
|
|
2691 |
|
@param |
2692 |
|
|
2693 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2694 |
91 |
public void setTextColThreshold(final int textColThreshold)... |
2695 |
|
{ |
2696 |
91 |
this._textColThreshold = textColThreshold; |
2697 |
91 |
this._has_textColThreshold = true; |
2698 |
|
} |
2699 |
|
|
2700 |
|
|
2701 |
|
|
2702 |
|
|
2703 |
|
@param |
2704 |
|
|
2705 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2706 |
91 |
public void setTitle(final java.lang.String title)... |
2707 |
|
{ |
2708 |
91 |
this._title = title; |
2709 |
|
} |
2710 |
|
|
2711 |
|
|
2712 |
|
|
2713 |
|
|
2714 |
|
@param |
2715 |
|
|
2716 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2717 |
84 |
public void setViewName(final java.lang.String viewName)... |
2718 |
|
{ |
2719 |
84 |
this._viewName = viewName; |
2720 |
|
} |
2721 |
|
|
2722 |
|
|
2723 |
|
|
2724 |
|
|
2725 |
|
@param |
2726 |
|
|
2727 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2728 |
91 |
public void setWidth(final int width)... |
2729 |
|
{ |
2730 |
91 |
this._width = width; |
2731 |
91 |
this._has_width = true; |
2732 |
|
} |
2733 |
|
|
2734 |
|
|
2735 |
|
|
2736 |
|
|
2737 |
|
@param |
2738 |
|
|
2739 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2740 |
91 |
public void setWrapAlignment(final boolean wrapAlignment)... |
2741 |
|
{ |
2742 |
91 |
this._wrapAlignment = wrapAlignment; |
2743 |
91 |
this._has_wrapAlignment = true; |
2744 |
|
} |
2745 |
|
|
2746 |
|
|
2747 |
|
|
2748 |
|
|
2749 |
|
@param |
2750 |
|
|
2751 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2752 |
91 |
public void setXpos(final int xpos)... |
2753 |
|
{ |
2754 |
91 |
this._xpos = xpos; |
2755 |
91 |
this._has_xpos = true; |
2756 |
|
} |
2757 |
|
|
2758 |
|
|
2759 |
|
|
2760 |
|
|
2761 |
|
@param |
2762 |
|
|
2763 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2764 |
91 |
public void setYpos(final int ypos)... |
2765 |
|
{ |
2766 |
91 |
this._ypos = ypos; |
2767 |
91 |
this._has_ypos = true; |
2768 |
|
} |
2769 |
|
|
2770 |
|
|
2771 |
|
|
2772 |
|
|
2773 |
|
@param |
2774 |
|
@throws |
2775 |
|
|
2776 |
|
|
2777 |
|
@throws |
2778 |
|
|
2779 |
|
@return |
2780 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
2781 |
0 |
public static jalview.schemabinding.version2.Viewport unmarshal(... |
2782 |
|
final java.io.Reader reader) |
2783 |
|
throws org.exolab.castor.xml.MarshalException, |
2784 |
|
org.exolab.castor.xml.ValidationException |
2785 |
|
{ |
2786 |
0 |
return (jalview.schemabinding.version2.Viewport) Unmarshaller |
2787 |
|
.unmarshal(jalview.schemabinding.version2.Viewport.class, |
2788 |
|
reader); |
2789 |
|
} |
2790 |
|
|
2791 |
|
|
2792 |
|
|
2793 |
|
|
2794 |
|
@throws |
2795 |
|
|
2796 |
|
|
|
|
| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
2797 |
0 |
public void validate() throws org.exolab.castor.xml.ValidationException... |
2798 |
|
{ |
2799 |
0 |
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); |
2800 |
0 |
validator.validate(this); |
2801 |
|
} |
2802 |
|
|
2803 |
|
} |