Class | Line # | Actions | ||||
---|---|---|---|---|---|---|
EnsemblSeqProxyAdapter | 29 | 6 | 6 | 12 |
1 | /* | |
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
4 | * | |
5 | * This file is part of Jalview. | |
6 | * | |
7 | * Jalview is free software: you can redistribute it and/or | |
8 | * modify it under the terms of the GNU General Public License | |
9 | * as published by the Free Software Foundation, either version 3 | |
10 | * of the License, or (at your option) any later version. | |
11 | * | |
12 | * Jalview is distributed in the hope that it will be useful, but | |
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
15 | * PURPOSE. See the GNU General Public License for more details. | |
16 | * | |
17 | * You should have received a copy of the GNU General Public License | |
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
20 | */ | |
21 | package jalview.ext.ensembl; | |
22 | ||
23 | import jalview.datamodel.SequenceFeature; | |
24 | ||
25 | /** | |
26 | * A convenience class to simplify writing unit tests (pending Mockito or | |
27 | * similar?) | |
28 | */ | |
29 | public class EnsemblSeqProxyAdapter extends EnsemblSeqProxy | |
30 | { | |
31 | /** | |
32 | * Default constructor (to use rest.ensembl.org) | |
33 | */ | |
34 | 0 | public EnsemblSeqProxyAdapter() |
35 | { | |
36 | 0 | super(); |
37 | } | |
38 | ||
39 | /** | |
40 | * Constructor given the target domain to fetch data from | |
41 | * | |
42 | * @param d | |
43 | */ | |
44 | 0 | public EnsemblSeqProxyAdapter(String d) |
45 | { | |
46 | 0 | super(d); |
47 | } | |
48 | ||
49 | 0 | @Override |
50 | public String getDbName() | |
51 | { | |
52 | 0 | return null; |
53 | } | |
54 | ||
55 | 0 | @Override |
56 | protected EnsemblFeatureType[] getFeaturesToFetch() | |
57 | { | |
58 | 0 | return null; |
59 | } | |
60 | ||
61 | 0 | @Override |
62 | protected EnsemblSeqType getSourceEnsemblType() | |
63 | { | |
64 | 0 | return null; |
65 | } | |
66 | ||
67 | 0 | @Override |
68 | protected boolean identifiesSequence(SequenceFeature sf, String accId) | |
69 | { | |
70 | 0 | return false; |
71 | } | |
72 | ||
73 | } |