Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
EnsemblSeqProxyAdapter	29	6	6	12	0.00%	Show methods

Class EnsemblSeqProxyAdapter

Class EnsemblSeqProxyAdapter	Line # 29	Total Statements 6	Complexity 6	Uncovered Elements 12	TOTAL Coverage 0.00%
EnsemblSeqProxyAdapter()   EnsemblSeqProxyAdapter()	3434	1.01	1.01	1.01	0.0 0.00%
EnsemblSeqProxyAdapter(String)   EnsemblSeqProxyAdapter(String)	4444	1.01	1.01	1.01	0.0 0.00%
getDbName() : String   getDbName() : String	4949	1.01	1.01	1.01	0.0 0.00%
getFeaturesToFetch() : EnsemblFeatureType[]   getFeaturesToFetch() : EnsemblFeatureType[]	5555	1.01	1.01	1.01	0.0 0.00%
getSourceEnsemblType() : EnsemblSeqType   getSourceEnsemblType() : EnsemblSeqType	6161	1.01	1.01	1.01	0.0 0.00%
identifiesSequence(SequenceFeature,String) : boolean   identifiesSequence(SequenceFeature,String) : boolean	6767	1.01	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ext.ensembl;
22
23		import jalview.datamodel.SequenceFeature;
24
25		/**
26		* A convenience class to simplify writing unit tests (pending Mockito or
27		* similar?)
28		*/
		0% Uncovered Elements: 12 (12) Complexity: 6 Complexity Density: 1
29		public class EnsemblSeqProxyAdapter extends EnsemblSeqProxy
30		{
31		/**
32		* Default constructor (to use rest.ensembl.org)
33		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
34	0	public EnsemblSeqProxyAdapter()...
35		{
36	0	super();
37		}
38
39		/**
40		* Constructor given the target domain to fetch data from
41		*
42		* @param d
43		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
44	0	public EnsemblSeqProxyAdapter(String d)...
45		{
46	0	super(d);
47		}
48
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
49	0	@Override...
50		public String getDbName()
51		{
52	0	return null;
53		}
54
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
55	0	@Override...
56		protected EnsemblFeatureType[] getFeaturesToFetch()
57		{
58	0	return null;
59		}
60
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
61	0	@Override...
62		protected EnsemblSeqType getSourceEnsemblType()
63		{
64	0	return null;
65		}
66
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
67	0	@Override...
68		protected boolean identifiesSequence(SequenceFeature sf, String accId)
69		{
70	0	return false;
71		}
72
73		}