jalviewX
File UniprotEntry.java
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Classes
| Class | Line # | Actions | ||||
|---|---|---|---|---|---|---|
| UniprotEntry | 32 | 12 | 12 | 0 |
Contributing tests
This file is covered by 4 tests.
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| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.datamodel.xdb.uniprot; | |
| 22 | ||
| 23 | import jalview.datamodel.PDBEntry; | |
| 24 | ||
| 25 | import java.util.Vector; | |
| 26 | ||
| 27 | /** | |
| 28 | * Data model for an entry returned from a Uniprot query | |
| 29 | * | |
| 30 | * @see uniprot_mapping.xml | |
| 31 | */ | |
| 32 | public class UniprotEntry | |
| 33 | { | |
| 34 | ||
| 35 | UniprotSequence sequence; | |
| 36 | ||
| 37 | Vector<String> name; | |
| 38 | ||
| 39 | Vector<String> accession; | |
| 40 | ||
| 41 | Vector<UniprotFeature> feature; | |
| 42 | ||
| 43 | Vector<PDBEntry> dbrefs; | |
| 44 | ||
| 45 | UniprotProteinName protName; | |
| 46 | ||
| 47 | 4 |  public void setAccession(Vector<String> items) |
| 48 | { | |
| 49 | 4 | accession = items; |
| 50 | } | |
| 51 | ||
| 52 | 4 | public void setFeature(Vector<UniprotFeature> items) |
| 53 | { | |
| 54 | 4 | feature = items; |
| 55 | } | |
| 56 | ||
| 57 | 31 | public Vector<UniprotFeature> getFeature() |
| 58 | { | |
| 59 | 31 | return feature; |
| 60 | } | |
| 61 | ||
| 62 | 16 | public Vector<String> getAccession() |
| 63 | { | |
| 64 | 16 | return accession; |
| 65 | } | |
| 66 | ||
| 67 | 4 | public void setProtein(UniprotProteinName names) |
| 68 | { | |
| 69 | 4 | protName = names; |
| 70 | } | |
| 71 | ||
| 72 | 13 | public UniprotProteinName getProtein() |
| 73 | { | |
| 74 | 13 | return protName; |
| 75 | } | |
| 76 | ||
| 77 | 4 | public void setName(Vector<String> na) |
| 78 | { | |
| 79 | 4 | name = na; |
| 80 | } | |
| 81 | ||
| 82 | 17 | public Vector<String> getName() |
| 83 | { | |
| 84 | 17 | return name; |
| 85 | } | |
| 86 | ||
| 87 | 6 | public UniprotSequence getUniprotSequence() |
| 88 | { | |
| 89 | 6 | return sequence; |
| 90 | } | |
| 91 | ||
| 92 | 4 | public void setUniprotSequence(UniprotSequence seq) |
| 93 | { | |
| 94 | 4 | sequence = seq; |
| 95 | } | |
| 96 | ||
| 97 | 18 | public Vector<PDBEntry> getDbReference() |
| 98 | { | |
| 99 | 18 | return dbrefs; |
| 100 | } | |
| 101 | ||
| 102 | 4 | public void setDbReference(Vector<PDBEntry> dbref) |
| 103 | { | |
| 104 | 4 | this.dbrefs = dbref; |
| 105 | } | |
| 106 | ||
| 107 | } |