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package jalview.datamodel; |
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import static org.testng.AssertJUnit.assertEquals; |
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import static org.testng.AssertJUnit.assertSame; |
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import jalview.gui.JvOptionPane; |
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import jalview.util.MapList; |
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import java.util.Arrays; |
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import org.testng.annotations.BeforeClass; |
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import org.testng.annotations.Test; |
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| 100% |
Uncovered Elements: 0 (30) |
Complexity: 4 |
Complexity Density: 0.15 |
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public class MappingTest |
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{ |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
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@BeforeClass(alwaysRun = true)... |
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public void setUpJvOptionPane() |
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{ |
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JvOptionPane.setInteractiveMode(false); |
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JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION); |
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} |
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| 100% |
Uncovered Elements: 0 (10) |
Complexity: 1 |
Complexity Density: 0.1 |
1PASS
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@Test(groups = { "Functional" })... |
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public void testIntersectVisContigs() |
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{ |
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MapList fk = new MapList(new int[] { 1, 6, 8, 13, 15, 23 }, new int[] { |
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1, 7 }, 3, 1); |
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Mapping m = new Mapping(fk); |
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Mapping m_1 = m.intersectVisContigs(new int[] { fk.getFromLowest(), |
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fk.getFromHighest() }); |
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Mapping m_2 = m.intersectVisContigs(new int[] { 1, 7, 11, 20 }); |
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String result = Arrays.deepToString(m_1.map.getFromRanges().toArray()); |
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System.out.println(result); |
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assertEquals("[[1, 6], [8, 13], [15, 23]]", result); |
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result = Arrays.deepToString(m_2.map.getFromRanges().toArray()); |
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System.out.println(result); |
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assertEquals("[[1, 6], [11, 13], [15, 20]]", result); |
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} |
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| 100% |
Uncovered Elements: 0 (6) |
Complexity: 1 |
Complexity Density: 0.17 |
1PASS
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@Test(groups = { "Functional" })... |
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public void testToString() |
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{ |
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MapList fk = new MapList(new int[] { 1, 6, 8, 13 }, new int[] { 4, 7 }, |
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3, 1); |
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Mapping m = new Mapping(fk); |
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assertEquals("[ [1, 6] [8, 13] ] 3:1 to [ [4, 7] ] ", m.toString()); |
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SequenceI seq = new Sequence("Seq1", ""); |
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m = new Mapping(seq, fk); |
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assertEquals("[ [1, 6] [8, 13] ] 3:1 to [ [4, 7] ] Seq1", m.toString()); |
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} |
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| 100% |
Uncovered Elements: 0 (8) |
Complexity: 1 |
Complexity Density: 0.12 |
1PASS
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@Test(groups = { "Functional" })... |
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public void testCopyConstructor() |
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{ |
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MapList ml = new MapList(new int[] { 1, 6, 8, 13 }, new int[] { 4, 7 }, |
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3, 1); |
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SequenceI seq = new Sequence("seq1", "agtacg"); |
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Mapping m = new Mapping(seq, ml); |
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m.setMappedFromId("abc"); |
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Mapping copy = new Mapping(m); |
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assertEquals("abc", copy.getMappedFromId()); |
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assertEquals(ml, copy.getMap()); |
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assertSame(seq, copy.getTo()); |
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} |
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} |