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package jalview.analysis; |
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import static org.testng.AssertJUnit.assertEquals; |
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import static org.testng.AssertJUnit.assertTrue; |
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import jalview.gui.JvOptionPane; |
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import java.util.Arrays; |
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import org.testng.annotations.BeforeClass; |
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import org.testng.annotations.Test; |
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| 100% |
Uncovered Elements: 0 (39) |
Complexity: 4 |
Complexity Density: 0.11 |
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public class CodingUtilsTest |
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{ |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
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@BeforeClass(alwaysRun = true)... |
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public void setUpJvOptionPane() |
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{ |
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JvOptionPane.setInteractiveMode(false); |
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JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION); |
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} |
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| 100% |
Uncovered Elements: 0 (8) |
Complexity: 1 |
Complexity Density: 0.12 |
1PASS
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@Test(groups = { "Functional" })... |
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public void testDecodeCodon() |
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{ |
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assertTrue(Arrays.equals(new char[] { 'A', 'A', 'A' }, |
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CodingUtils.decodeCodon(0))); |
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assertTrue(Arrays.equals(new char[] { 'A', 'A', 'C' }, |
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CodingUtils.decodeCodon(1))); |
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assertTrue(Arrays.equals(new char[] { 'A', 'A', 'G' }, |
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CodingUtils.decodeCodon(2))); |
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assertTrue(Arrays.equals(new char[] { 'A', 'A', 'T' }, |
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CodingUtils.decodeCodon(3))); |
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assertTrue(Arrays.equals(new char[] { 'A', 'C', 'A' }, |
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CodingUtils.decodeCodon(4))); |
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assertTrue(Arrays.equals(new char[] { 'C', 'A', 'A' }, |
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CodingUtils.decodeCodon(16))); |
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assertTrue(Arrays.equals(new char[] { 'G', 'G', 'G' }, |
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CodingUtils.decodeCodon(42))); |
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assertTrue(Arrays.equals(new char[] { 'T', 'T', 'T' }, |
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CodingUtils.decodeCodon(63))); |
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} |
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| 100% |
Uncovered Elements: 0 (5) |
Complexity: 1 |
Complexity Density: 0.2 |
1PASS
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@Test(groups = { "Functional" })... |
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public void testDecodeNucleotide() |
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{ |
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assertEquals('A', CodingUtils.decodeNucleotide(0)); |
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assertEquals('C', CodingUtils.decodeNucleotide(1)); |
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assertEquals('G', CodingUtils.decodeNucleotide(2)); |
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assertEquals('T', CodingUtils.decodeNucleotide(3)); |
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assertEquals('0', CodingUtils.decodeNucleotide(4)); |
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} |
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| 100% |
Uncovered Elements: 0 (20) |
Complexity: 1 |
Complexity Density: 0.05 |
1PASS
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@Test(groups = { "Functional" })... |
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public void testEncodeCodon() |
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{ |
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assertTrue(CodingUtils.encodeCodon('Z') < 0); |
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assertEquals(0, CodingUtils.encodeCodon('a')); |
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assertEquals(0, CodingUtils.encodeCodon('A')); |
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assertEquals(1, CodingUtils.encodeCodon('c')); |
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assertEquals(1, CodingUtils.encodeCodon('C')); |
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assertEquals(2, CodingUtils.encodeCodon('g')); |
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assertEquals(2, CodingUtils.encodeCodon('G')); |
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assertEquals(3, CodingUtils.encodeCodon('t')); |
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assertEquals(3, CodingUtils.encodeCodon('T')); |
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assertEquals(3, CodingUtils.encodeCodon('u')); |
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assertEquals(3, CodingUtils.encodeCodon('U')); |
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assertEquals(-1, CodingUtils.encodeCodon(null)); |
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assertEquals(0, CodingUtils.encodeCodon(new char[] { 'A', 'A', 'A' })); |
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assertEquals(1, CodingUtils.encodeCodon(new char[] { 'A', 'A', 'C' })); |
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assertEquals(2, CodingUtils.encodeCodon(new char[] { 'A', 'A', 'G' })); |
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assertEquals(3, CodingUtils.encodeCodon(new char[] { 'A', 'A', 'T' })); |
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assertEquals(4, CodingUtils.encodeCodon(new char[] { 'A', 'C', 'A' })); |
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assertEquals(16, CodingUtils.encodeCodon(new char[] { 'C', 'A', 'A' })); |
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assertEquals(42, CodingUtils.encodeCodon(new char[] { 'G', 'G', 'G' })); |
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assertEquals(63, CodingUtils.encodeCodon(new char[] { 'T', 'T', 'T' })); |
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} |
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} |