Clover icon

Coverage Report

  1. Project Clover database Mon Nov 18 2024 09:56:54 GMT
  2. Package jalview.ws.dbsources

File EmblCdsSource.java

 

Coverage histogram

../../../img/srcFileCovDistChart5.png
43% of files have more coverage

Code metrics

2
7
5
1
65
34
6
0.86
1.4
5
1.2

Classes

Class Line # Actions
EmblCdsSource 26 7 6
0.4285714342.9%
 

Contributing tests

This file is covered by 182 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.ws.dbsources;
22   
23    import jalview.datamodel.AlignmentI;
24    import jalview.datamodel.DBRefSource;
25   
 
26    public class EmblCdsSource extends EmblFlatfileSource // was EmblXmlSource
27    {
28   
 
29  16 toggle public EmblCdsSource()
30    {
31  16 super();
32    }
33   
 
34  2152 toggle @Override
35    public String getDbSource()
36    {
37  2152 return DBRefSource.EMBLCDS;
38    }
39   
 
40  0 toggle @Override
41    public AlignmentI getSequenceRecords(String queries) throws Exception
42    {
43  0 if (queries.indexOf(".") > -1)
44    {
45  0 queries = queries.substring(0, queries.indexOf("."));
46    }
47  0 return getEmblSequenceRecords(DBRefSource.EMBLCDS, queries);
48    }
49   
50    /**
51    * cDNA for LDHA_CHICK swissprot sequence
52    */
 
53  0 toggle @Override
54    public String getTestQuery()
55    {
56  0 return "CAA37824";
57    }
58   
 
59  2136 toggle @Override
60    public String getDbName()
61    {
62  2136 return "EMBL (CDS)";
63    }
64   
65    }
  • Report generated by OpenClover v 4.4.1 on Mon Nov 18 2024 10:04:05 GMT using coverage data from Mon Nov 18 2024 10:03:47 GMT.
  • OpenClover is free and open-source software.