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com.stevesoft.pat.patInf
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jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
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com.stevesoft.pat.Rthings
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mc_view.Residue
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jalview.gui.FeatureRenderer
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jalview.util.MapUtils
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jalview.renderer.ContactMapRenderer
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jalview.ws.dbsources.EmblSource
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0.660%
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jalview.util.ParseHtmlBodyAndLinks
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jalview.gui.AssociatePdbFileWithSeq
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
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jalview.ws.dbsources.PfamFull
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
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mc_view.PDBChain
mc_view.PDBChain
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jalview.jbgui.GStructureChooser
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jalview.workers.AlignCalcManager
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mc_view.Bond
mc_view.Bond
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jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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0.550%
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0.550%
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jalview.io.BioJsHTMLOutput
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jalview.io.AlignFile
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jalview.io.FileLoader
jalview.io.FileLoader
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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jalview.gui.ColourMenuHelper
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jalview.ws.utils.UrlDownloadClient
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jalview.ws.dbsources.RfamSeed
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jalview.schemes.ResidueColourScheme
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jalview.io.StructureFile
jalview.io.StructureFile
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jalview.datamodel.FloatContactMatrix
jalview.datamodel.FloatContactMatrix
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0.4242%
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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jalview.datamodel.annotations.AnnotationRowBuilder
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jalview.gui.SequenceRenderer
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
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0.440%
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0.440%
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0.440%
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jalview.schemes.BuriedColourScheme
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0.440%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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0.3980891739.8%
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jalview.structure.PDBEntryUtils
jalview.structure.PDBEntryUtils
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0.3972602839.7%
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jalview.datamodel.ResidueCount
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0.389090938.9%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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jalview.ws.rest.params.Alignment
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jalview.datamodel.features.FeatureAttributes.AttributeData
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jalview.datamodel.AlignmentAnnotation
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0.3768656837.7%
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jalview.renderer.ContactGeometry
jalview.renderer.ContactGeometry
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jalview.fts.core.FTSRestClient
jalview.fts.core.FTSRestClient
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0.3706563737.1%
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jalview.util.Format
jalview.util.Format
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jalview.datamodel.PDBEntry
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jalview.ws.datamodel.alphafold.PAEContactMatrix
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jalview.io.FastaFile
jalview.io.FastaFile
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0.3603603536%
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jalview.renderer.ContactGeometry.contactInterval
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0.3571428735.7%
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jalview.util.MessageManager
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jalview.jbgui.GStructureChooser.AssociateSeqPanel
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0.352941235.3%
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jalview.util.Comparison
jalview.util.Comparison
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0.350393735%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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0.3464285734.6%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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jalview.viewmodel.styles.ViewStyle
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0.3369565333.7%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.3295847833%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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0.3292079332.9%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.3289473732.9%
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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0.3142857331.4%
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jalview.viewmodel.ViewportRanges
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0.3135313431.4%
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jalview.gui.AlignmentPanel
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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jalview.schemes.JalviewColourScheme
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jalview.gui.AlignViewport
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mc_view.Atom
mc_view.Atom
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0.282051328.2%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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jalview.gui.structurechooser.StructureChooserQuerySource
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0.2828%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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jalview.io.FileParse
jalview.io.FileParse
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0.2785515227.9%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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jalview.datamodel.features.FeatureAttributes
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jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
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0.268292726.8%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.2557575725.6%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.2514619825.1%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.2507062325.1%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.ext.ensembl.EnsemblSequenceFetcher
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0.2525%
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jalview.ws.rest.RestClient
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0.2525%
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jalview.ws.jws1.WS1Client
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0.2424%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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0.2346938823.5%
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jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.2323943723.2%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2312925223.1%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.2307692323.1%
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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0.2272727322.7%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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0.22522.5%
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jalview.util.MapList
jalview.util.MapList
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jalview.datamodel.features.FeatureStore
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0.220543822.1%
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jalview.gui.PromptUserConfig
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0.215909121.6%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.2116788321.2%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.2099447521%
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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0.2072727220.7%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.205992520.6%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.2014388420.1%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.220%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.191082819.1%
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jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
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0.1857142918.6%
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jalview.io.JalviewFileChooser
jalview.io.JalviewFileChooser
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0.185286118.5%
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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0.1805555518.1%
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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0.17517.5%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1723076917.2%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.1720430117.2%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
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0.1666666716.7%
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jalview.gui.Desktop.MyDesktopManager
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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jalview.schemes.TCoffeeColourScheme
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jalview.log.JLogger
jalview.log.JLogger
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jalview.gui.Desktop.MyDesktopPane
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0.1428571514.3%
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jalview.io.AppletFormatAdapter
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jalview.ws.dbsources.EBIAlfaFold
jalview.ws.dbsources.EBIAlfaFold
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0.1417910514.2%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.14062514.1%
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jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
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0.137513.8%
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jalview.datamodel.GroupSet
jalview.datamodel.GroupSet
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0.1293103412.9%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.1271008412.7%
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jalview.ws.dbsources.Rfam
jalview.ws.dbsources.Rfam
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0.12512.5%
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jalview.bin.Console
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jalview.gui.SeqCanvas
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jalview.util.JSONUtils
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jalview.gui.Desktop
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jalview.gui.Console
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jalview.schemes.RNAHelicesColour
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jalview.gui.ProgressBar
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com.stevesoft.pat.OrMark
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com.stevesoft.pat.FastMulti
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jalview.schemes.ColourSchemes
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jalview.gui.IdPanel
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com.stevesoft.pat.RegOpt
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jalview.analysis.CrossRef
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jalview.gui.StructureChooser
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jalview.datamodel.DBRefEntry
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jalview.gui.ViewSelectionMenu
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jalview.structure.StructureImportSettings
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jalview.ws.dbsources.Pdb
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jalview.analysis.AlignmentUtils
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jalview.analysis.GeneticCodes
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jalview.bin.Cache
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jalview.structure.StructureMapping
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jalview.util.DBRefUtils
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jalview.datamodel.ColumnSelection
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jalview.ws.jws1.JPredClient
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jalview.gui.WsParamSetManager
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jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
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org.json.simple.JSONObject
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jalview.datamodel.HiddenColumns
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jalview.ext.ensembl.EnsemblRestClient
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jalview.datamodel.HiddenSequences
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jalview.ws.dbsources.Uniprot
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jalview.util.MappingUtils
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jalview.ext.ensembl.EnsemblGene
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jalview.datamodel.HiddenColumnsCursor
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jalview.gui.StructureViewer
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jalview.controller.AlignViewController
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jalview.gui.SeqPanel
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jalview.io.SequenceAnnotationReport
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jalview.bin.Jalview
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jalview.gui.SequenceFetcher
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jalview.bin.argparser.BootstrapArgs
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org.json.simple.JSONArray
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com.stevesoft.pat.RegRes
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com.stevesoft.pat.CaseMgr
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