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com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
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1.0100%
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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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1.0100%
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jalview.xml.binding.jalview.AnnotationElement
jalview.xml.binding.jalview.AnnotationElement
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1.0100%
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jalview.xml.binding.jalview.SequenceType
jalview.xml.binding.jalview.SequenceType
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1.0100%
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jalview.xml.binding.jalview.JalviewModel.FeatureSettings
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1.0100%
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jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group
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1.0100%
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jalview.xml.binding.jalview.JalviewModel.Viewport.Overview
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1.0100%
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jalview.xml.binding.jalview.Pdbentry
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1.0100%
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jalview.xml.binding.jalview.Pdbentry.Property
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1.0100%
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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.project.Jalview2XML.JvAnnotRow
jalview.project.Jalview2XML.JvAnnotRow
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.gui.ProgressPanel
jalview.gui.ProgressPanel
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0.975609897.6%
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jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.xml.binding.jalview.Feature
jalview.xml.binding.jalview.Feature
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0.911764791.2%
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jalview.xml.binding.jalview.SequenceSet
jalview.xml.binding.jalview.SequenceSet
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0.894736889.5%
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jalview.datamodel.Profiles
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0.866666786.7%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.861575286.2%
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jalview.viewmodel.styles.ViewStyle
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0.858695685.9%
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com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
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0.8461538684.6%
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mc_view.Residue
mc_view.Residue
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0.8461538684.6%
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jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids
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0.833333383.3%
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jalview.datamodel.VisibleRowsCollection
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0.833333383.3%
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jalview.xml.binding.jalview.JalviewModel.Viewport
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0.8267973782.7%
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jalview.xml.binding.jalview.JalviewModel
jalview.xml.binding.jalview.JalviewModel
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0.807692380.8%
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jalview.datamodel.VisibleColsCollection
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0.880%
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jalview.xml.binding.jalview.Annotation
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0.790909179.1%
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jalview.viewmodel.OverviewDimensions
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jalview.util.LinkedIdentityHashSet
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jalview.xml.binding.jalview.JalviewModel.JSeq
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0.770833377.1%
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jalview.xml.binding.jalview.Sequence.DBRef
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0.7575%
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jalview.datamodel.Profile
jalview.datamodel.Profile
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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jalview.xml.binding.jalview.Sequence
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
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jalview.datamodel.VisibleRowsIterator
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0.770%
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jalview.workers.ConsensusThread
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jalview.renderer.OverviewRenderer
jalview.renderer.OverviewRenderer
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0.680722968.1%
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jalview.ws.SequenceFetcher
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jalview.renderer.OverviewResColourFinder
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jalview.jbgui.GAlignFrame
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jalview.schemes.FeatureSettingsAdapter
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jalview.workers.ConservationThread
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0.5666666656.7%
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jalview.util.CaseInsensitiveString
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jalview.ext.jmol.JmolParser
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jalview.gui.OverviewPanel
jalview.gui.OverviewPanel
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
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jalview.gui.JalviewChangeSupport
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0.550%
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com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
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0.550%
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jalview.xml.binding.jalview.VAMSAS
jalview.xml.binding.jalview.VAMSAS
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0.550%
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mc_view.Bond
mc_view.Bond
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0.550%
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com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.BlossomColourScheme
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0.550%
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jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
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0.550%
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jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
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0.485714348.6%
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jalview.datamodel.PDBEntry
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0.482608748.3%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.4761904847.6%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.4682274246.8%
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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jalview.workers.AlignCalcManager
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jalview.io.StructureFile
jalview.io.StructureFile
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.4322033843.2%
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jalview.datamodel.HiddenCursorPosition
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
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0.440%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.385245938.5%
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jalview.project.Jalview2XML
jalview.project.Jalview2XML
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.3594632735.9%
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jalview.schemes.ResidueColourScheme
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0.3571428735.7%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.3563636235.6%
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
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0.348993334.9%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.3462897534.6%
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0.3271144332.7%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.3248407532.5%
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jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
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0.3225806432.3%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.321917832.2%
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jalview.util.Format
jalview.util.Format
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0.3209109632.1%
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jalview.util.Comparison
jalview.util.Comparison
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0.3188976331.9%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.3174603331.7%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.31531.5%
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
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0.313725531.4%
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jalview.datamodel.PDBEntry.Type
jalview.datamodel.PDBEntry.Type
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0.312531.2%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.3095238231%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.306930730.7%
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mc_view.PDBChain
mc_view.PDBChain
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0.304687530.5%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.3027681730.3%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.285714328.6%
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jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
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0.282051328.2%
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mc_view.Atom
mc_view.Atom
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0.282051328.2%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
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0.2812528.1%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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0.2708333427.1%
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
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0.2692307826.9%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.2567975825.7%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.253521125.4%
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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0.250909125.1%
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
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0.248826324.9%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.2482014424.8%
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jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.datamodel.VisibleContigsIterator
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0.2340425623.4%
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jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2312925223.1%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.2304687523%
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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0.2272727322.7%
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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0.22522.5%
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jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
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0.2142857221.4%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
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0.2123287621.2%
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jalview.viewmodel.OverviewDimensionsHideHidden
jalview.viewmodel.OverviewDimensionsHideHidden
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0.211267621.1%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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0.2068965620.7%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.2050092820.5%
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jalview.io.FileParse
jalview.io.FileParse
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0.2033426220.3%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.1989247419.9%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.1970443319.7%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1944444519.4%
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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0.17517.5%
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jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.log.JLogger
jalview.log.JLogger
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0.1648351716.5%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.1636363616.4%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.Desktop.MyDesktopManager
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0.1555555615.6%
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jalview.viewmodel.seqfeatures.FeatureRendererSettings
jalview.viewmodel.seqfeatures.FeatureRendererSettings
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0.1555555615.6%
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jalview.bin.Console
jalview.bin.Console
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0.1527093615.3%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.1428571514.3%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.1425742514.3%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1415525114.2%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.1280487812.8%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.12422360512.4%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.1116173111.2%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.10032362510%
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
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0.098639469.9%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.098461549.8%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.0957575749.6%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.09523819.5%
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jalview.schemes.FeatureColour
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.0936555869.4%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.0930232559.3%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.0843373468.4%
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jalview.ext.ensembl.EnsemblSequenceFetcher
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jalview.gui.Console
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jalview.schemes.RNAHelicesColour
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jalview.gui.ProgressBar
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
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jalview.schemes.ColourSchemes
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jalview.analysis.scoremodels.ScoreMatrix
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jalview.gui.IdPanel
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jalview.schemes.PIDColourScheme
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jalview.gui.IdwidthAdjuster
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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jalview.bin.Cache
jalview.bin.Cache
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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jalview.util.Platform
jalview.util.Platform
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.0512820525.1%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.04566214.6%
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jalview.xml.binding.jalview.ObjectFactory
jalview.xml.binding.jalview.ObjectFactory
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0.0427350444.3%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.0416666684.2%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.0373831763.7%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.0363636353.6%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
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0.0289855082.9%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0155642021.6%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.0144230771.4%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0125082291.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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0.0122699381.2%
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jalview.bin.Jalview
jalview.bin.Jalview
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0.0117328521.2%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.0110497241.1%
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jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
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0.0089285720.9%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
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0.0039603960.4%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
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com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
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jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00105042020.1%
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