Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
JalviewMimeContentHandler	44	2	15	17	0.00%	Show methods

Class JalviewMimeContentHandler

Class JalviewMimeContentHandler	Line # 44	Total Statements 2	Complexity 15	Uncovered Elements 17	TOTAL Coverage 0.00%
JalviewMimeContentHandler(JalviewDataset)   JalviewMimeContentHandler(JalviewDataset)	5656	1.01	1.01	1.01	0.0 0.00%
body(BodyDescriptor,InputStream) : void   body(BodyDescriptor,InputStream) : void	7676	0.00	1.01	0.00	-1.0 -1.0 -
endBodyPart() : void   endBodyPart() : void	8585	0.00	1.01	0.00	-1.0 -1.0 -
endHeader() : void   endHeader() : void	9292	0.00	1.01	0.00	-1.0 -1.0 -
endMessage() : void   endMessage() : void	9999	0.00	1.01	0.00	-1.0 -1.0 -
endMultipart() : void   endMultipart() : void	106106	0.00	1.01	0.00	-1.0 -1.0 -
epilogue(InputStream) : void   epilogue(InputStream) : void	113113	0.00	1.01	0.00	-1.0 -1.0 -
field(Field) : void   field(Field) : void	120120	0.00	1.01	0.00	-1.0 -1.0 -
preamble(InputStream) : void   preamble(InputStream) : void	127127	0.00	1.01	0.00	-1.0 -1.0 -
raw(InputStream) : void   raw(InputStream) : void	134134	0.00	1.01	0.00	-1.0 -1.0 -
startBodyPart() : void   startBodyPart() : void	141141	0.00	1.01	0.00	-1.0 -1.0 -
startHeader() : void   startHeader() : void	148148	0.00	1.01	0.00	-1.0 -1.0 -
startMessage() : void   startMessage() : void	155155	0.00	1.01	0.00	-1.0 -1.0 -
startMultipart(BodyDescriptor) : void   startMultipart(BodyDescriptor) : void	162162	0.00	1.01	0.00	-1.0 -1.0 -
getJalviewDataProviders() : Iterable<DataProvider>   getJalviewDataProviders() : Iterable<DataProvider>	174174	1.01	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.io.mime;
22
23		import jalview.io.packed.DataProvider;
24		import jalview.io.packed.JalviewDataset;
25
26		import java.io.IOException;
27		import java.io.InputStream;
28		import java.util.ArrayList;
29		import java.util.List;
30
31		import org.apache.james.mime4j.MimeException;
32		import org.apache.james.mime4j.descriptor.BodyDescriptor;
33		import org.apache.james.mime4j.parser.ContentHandler;
34		import org.apache.james.mime4j.parser.Field;
35
36		/**
37		* ContentHandler for parsing mime encoded messages into Jalview objects. TODO:
38		* complete implementation TODO: test implementation TODO: hook in to Jalview IO
39		* and service response parser.
40		*
41		* @author JimP
42		*
43		*/
		0% Uncovered Elements: 17 (17) Complexity: 15 Complexity Density: 7.5
44		public class JalviewMimeContentHandler implements ContentHandler
45		{
46		/**
47		* context for data parsed from multi-part mime document
48		*/
49		JalviewDataset context;
50
51		/**
52		* create a new handler to process a Jalview mime message.
53		*
54		* @param ds
55		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
56	0	public JalviewMimeContentHandler(JalviewDataset ds)...
57		{
58	0	context = ds;
59		}
60
61		/**
62		* type of data pack being parsed currently
63		*/
64		String currentType;
65
66		/**
67		* name of data pack being parsed currently
68		*/
69		String currentName;
70
71		/**
72		* sources for data to be parsed
73		*/
74		List<DataProvider> dataItems = new ArrayList<DataProvider>();
75
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
76	0	@Override...
77		public void body(BodyDescriptor arg0, InputStream arg1)
78		throws MimeException, IOException
79		{
80
81		// TODO Auto-generated method stub
82
83		}
84
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
85	0	@Override...
86		public void endBodyPart() throws MimeException
87		{
88		// TODO Auto-generated method stub
89
90		}
91
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
92	0	@Override...
93		public void endHeader() throws MimeException
94		{
95		// TODO Auto-generated method stub
96
97		}
98
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
99	0	@Override...
100		public void endMessage() throws MimeException
101		{
102		// TODO Auto-generated method stub
103
104		}
105
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
106	0	@Override...
107		public void endMultipart() throws MimeException
108		{
109		// TODO Auto-generated method stub
110
111		}
112
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
113	0	@Override...
114		public void epilogue(InputStream arg0) throws MimeException, IOException
115		{
116		// TODO Auto-generated method stub
117
118		}
119
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
120	0	@Override...
121		public void field(Field arg0) throws MimeException
122		{
123		// TODO Auto-generated method stub
124
125		}
126
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
127	0	@Override...
128		public void preamble(InputStream arg0) throws MimeException, IOException
129		{
130		// TODO Auto-generated method stub
131
132		}
133
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
134	0	@Override...
135		public void raw(InputStream arg0) throws MimeException, IOException
136		{
137		// TODO Auto-generated method stub
138
139		}
140
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
141	0	@Override...
142		public void startBodyPart() throws MimeException
143		{
144		// TODO Auto-generated method stub
145
146		}
147
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
148	0	@Override...
149		public void startHeader() throws MimeException
150		{
151		// TODO Auto-generated method stub
152
153		}
154
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
155	0	@Override...
156		public void startMessage() throws MimeException
157		{
158		// TODO Auto-generated method stub
159
160		}
161
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
162	0	@Override...
163		public void startMultipart(BodyDescriptor arg0) throws MimeException
164		{
165		// TODO Auto-generated method stub
166
167		}
168
169		/**
170		*
171		* @return data providers to parse each data file extracted from the mime
172		* stream.
173		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
174	0	public Iterable<DataProvider> getJalviewDataProviders()...
175		{
176		// TODO Auto-generated method stub
177	0	return null;
178		}
179
180		}