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package jalview.ws.ebi; |
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import static org.testng.AssertJUnit.assertEquals; |
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import static org.testng.AssertJUnit.assertNull; |
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import jalview.gui.JvOptionPane; |
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import org.testng.annotations.BeforeClass; |
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import org.testng.annotations.Test; |
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| 100% |
Uncovered Elements: 0 (39) |
Complexity: 3 |
Complexity Density: 0.08 |
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public class EBIFetchClientTest |
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{ |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
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@BeforeClass(alwaysRun = true)... |
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public void setUpJvOptionPane() |
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{ |
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JvOptionPane.setInteractiveMode(false); |
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JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION); |
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} |
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| 100% |
Uncovered Elements: 0 (4) |
Complexity: 1 |
Complexity Density: 0.25 |
1PASS
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@Test(groups = "Functional")... |
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public void testBuildUrl() |
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{ |
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assertEquals("https://www.ebi.ac.uk/ena/data/view/x53838&display=xml", |
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EBIFetchClient.buildUrl("X53838", "EMBL", "display=xml")); |
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assertEquals("https://www.ebi.ac.uk/ena/data/view/caa37824&display=xml", |
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EBIFetchClient.buildUrl("CAA37824", "EMBL", "display=xml")); |
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assertEquals("https://www.ebi.ac.uk/Tools/dbfetch/dbfetch/pdb/3a6s/pdb", |
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EBIFetchClient.buildUrl("3A6S", "PDB", "pdb")); |
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assertEquals( |
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"https://www.ebi.ac.uk/Tools/dbfetch/dbfetch/pdb/3a6s/mmCIF", |
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EBIFetchClient.buildUrl("3A6S", "PDB", "mmCIF")); |
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} |
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| 100% |
Uncovered Elements: 0 (30) |
Complexity: 1 |
Complexity Density: 0.03 |
1PASS
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@Test(groups = "Functional")... |
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public void testParseIds() |
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{ |
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StringBuilder queries = new StringBuilder(); |
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String db = EBIFetchClient.parseIds("pdb:3a6s;1A70", queries); |
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assertEquals("pdb", db); |
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assertEquals("3a6s,1A70", queries.toString()); |
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queries.setLength(0); |
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queries = new StringBuilder(); |
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db = EBIFetchClient.parseIds("3a6s;pdb:1A70", queries); |
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assertEquals("pdb", db); |
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assertEquals("3a6s,1A70", queries.toString()); |
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queries.setLength(0); |
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db = EBIFetchClient.parseIds("uniprot:P00340", queries); |
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assertEquals("uniprot", db); |
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assertEquals("P00340", queries.toString()); |
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queries.setLength(0); |
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queries.append("P30419"); |
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db = EBIFetchClient.parseIds("uniprot:P00340", queries); |
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assertEquals("uniprot", db); |
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assertEquals("P30419,P00340", queries.toString()); |
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queries.setLength(0); |
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db = EBIFetchClient.parseIds("pdb:3a6s;1a70;uniprot:P00340", queries); |
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assertNull(db); |
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assertEquals("3a6s,1a70", queries.toString()); |
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queries.setLength(0); |
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db = EBIFetchClient.parseIds("pdb:3a6s;pdb:1a70;PDB:1QIP", queries); |
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assertEquals("PDB", db); |
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assertEquals("3a6s,1a70,1QIP", queries.toString()); |
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queries.setLength(0); |
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db = EBIFetchClient.parseIds("P00340", queries); |
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assertNull(db); |
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assertEquals("P00340", queries.toString()); |
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} |
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} |