jalviewX
File PfamFull.java
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35% of files have more coverage
Classes
| Class | Line # | Actions | ||||
|---|---|---|---|---|---|---|
| PfamFull | 27 | 7 | 7 | 6 |
Contributing tests
This file is covered by 5 tests.
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| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.ws.dbsources; | |
| 22 | ||
| 23 | /** | |
| 24 | * flyweight class specifying retrieval of Full family alignments from PFAM | |
| 25 | * | |
| 26 | */ | |
| 27 | public class PfamFull extends Pfam | |
| 28 | { | |
| 29 | 8 |  public PfamFull() |
| 30 | { | |
| 31 | 8 | super(); |
| 32 | } | |
| 33 | ||
| 34 | 2 | @Override |
| 35 | public String getURLSuffix() | |
| 36 | { | |
| 37 | 2 | return "/alignment/full"; |
| 38 | } | |
| 39 | ||
| 40 | /* | |
| 41 | * (non-Javadoc) | |
| 42 | * | |
| 43 | * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() | |
| 44 | */ | |
| 45 | 18 | @Override |
| 46 | public String getDbName() | |
| 47 | { | |
| 48 | 18 | return "PFAM (Full)"; |
| 49 | } | |
| 50 | ||
| 51 | 12 | @Override |
| 52 | public String getDbSource() | |
| 53 | { | |
| 54 | 12 | return getDbName(); // so we have unique DbSource string. |
| 55 | } | |
| 56 | ||
| 57 | 0 | @Override |
| 58 | public String getTestQuery() | |
| 59 | { | |
| 60 | 0 | return "PF03760"; |
| 61 | } | |
| 62 | ||
| 63 | 0 | @Override |
| 64 | public String getDbVersion() | |
| 65 | { | |
| 66 | 0 | return null; |
| 67 | } | |
| 68 | ||
| 69 | 0 | @Override |
| 70 | public int getTier() | |
| 71 | { | |
| 72 | 0 | return 0; |
| 73 | } | |
| 74 | } |