Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
ViewStyle	36	157	89	28	0.8861788588.6%	Show methods

Class ViewStyle

Class ViewStyle	Line # 36	Total Statements 157	Complexity 89	Uncovered Elements 28	TOTAL Coverage 0.8861788588.6%
ViewStyle(ViewStyleI)   ViewStyle(ViewStyleI)	182182	41.041	1.01	0.00	1.0 1.0100%
ViewStyle()   ViewStyle()	228228	0.00	1.01	0.00	-1.0 -1.0 -
equals(Object) : boolean   equals(Object) : boolean	235235	8.08	3.03	2.02	0.8 0.880%
hashCode() : int   hashCode() : int	303303	25.025	1.01	25.025	0.0 0.00%
isUpperCasebold() : boolean   isUpperCasebold() : boolean	340340	1.01	1.01	0.00	1.0 1.0100%
setUpperCasebold(boolean) : void   setUpperCasebold(boolean) : void	350350	1.01	1.01	0.00	1.0 1.0100%
getAbovePIDThreshold() : boolean   getAbovePIDThreshold() : boolean	373373	1.01	1.01	0.00	1.0 1.0100%
getCharHeight() : int   getCharHeight() : int	384384	1.01	1.01	0.00	1.0 1.0100%
getCharWidth() : int   getCharWidth() : int	395395	1.01	1.01	0.00	1.0 1.0100%
getColourAppliesToAllGroups() : boolean   getColourAppliesToAllGroups() : boolean	406406	1.01	1.01	0.00	1.0 1.0100%
getColourText() : boolean   getColourText() : boolean	417417	1.01	1.01	0.00	1.0 1.0100%
getConservationSelected() : boolean   getConservationSelected() : boolean	428428	1.01	1.01	0.00	1.0 1.0100%
getIncrement() : int   getIncrement() : int	439439	1.01	1.01	0.00	1.0 1.0100%
getScaleAboveWrapped() : boolean   getScaleAboveWrapped() : boolean	450450	1.01	1.01	0.00	1.0 1.0100%
getScaleLeftWrapped() : boolean   getScaleLeftWrapped() : boolean	461461	1.01	1.01	0.00	1.0 1.0100%
getScaleRightWrapped() : boolean   getScaleRightWrapped() : boolean	472472	1.01	1.01	0.00	1.0 1.0100%
getShowBoxes() : boolean   getShowBoxes() : boolean	483483	1.01	1.01	0.00	1.0 1.0100%
getShowHiddenMarkers() : boolean   getShowHiddenMarkers() : boolean	489489	1.01	1.01	0.00	1.0 1.0100%
getShowJVSuffix() : boolean   getShowJVSuffix() : boolean	500500	1.01	1.01	0.00	1.0 1.0100%
getShowText() : boolean   getShowText() : boolean	511511	1.01	1.01	0.00	1.0 1.0100%
getShowUnconserved() : boolean   getShowUnconserved() : boolean	517517	1.01	1.01	0.00	1.0 1.0100%
getTextColour() : Color   getTextColour() : Color	526526	1.01	1.01	0.00	1.0 1.0100%
getTextColour2() : Color   getTextColour2() : Color	535535	1.01	1.01	0.00	1.0 1.0100%
getThreshold() : int   getThreshold() : int	546546	1.01	1.01	0.00	1.0 1.0100%
getThresholdTextColour() : int   getThresholdTextColour() : int	555555	1.01	1.01	0.00	1.0 1.0100%
getWrapAlignment() : boolean   getWrapAlignment() : boolean	566566	1.01	1.01	0.00	1.0 1.0100%
getWrappedWidth() : int   getWrappedWidth() : int	577577	1.01	1.01	0.00	1.0 1.0100%
isColourByReferenceSeq() : boolean   isColourByReferenceSeq() : boolean	583583	1.01	1.01	0.00	1.0 1.0100%
isConservationColourSelected() : boolean   isConservationColourSelected() : boolean	592592	1.01	1.01	0.00	1.0 1.0100%
isDisplayReferenceSeq() : boolean   isDisplayReferenceSeq() : boolean	598598	1.01	1.01	0.00	1.0 1.0100%
isRenderGaps() : boolean   isRenderGaps() : boolean	607607	1.01	1.01	0.00	1.0 1.0100%
isRightAlignIds() : boolean   isRightAlignIds() : boolean	613613	1.01	1.01	0.00	1.0 1.0100%
isSeqNameItalics() : boolean   isSeqNameItalics() : boolean	622622	1.01	1.01	0.00	1.0 1.0100%
isShowAnnotation() : boolean   isShowAnnotation() : boolean	628628	1.01	1.01	0.00	1.0 1.0100%
isShowColourText() : boolean   isShowColourText() : boolean	637637	1.01	1.01	0.00	1.0 1.0100%
isShowSequenceFeaturesHeight() : boolean   isShowSequenceFeaturesHeight() : boolean	646646	1.01	1.01	0.00	1.0 1.0100%
isShowSequenceFeatures() : boolean   isShowSequenceFeatures() : boolean	652652	1.01	1.01	0.00	1.0 1.0100%
setAbovePIDThreshold(boolean) : void   setAbovePIDThreshold(boolean) : void	665665	1.01	1.01	0.00	1.0 1.0100%
setCharHeight(int) : void   setCharHeight(int) : void	677677	1.01	1.01	0.00	1.0 1.0100%
setCharWidth(int) : void   setCharWidth(int) : void	689689	1.01	1.01	0.00	1.0 1.0100%
setColourAppliesToAllGroups(boolean) : void   setColourAppliesToAllGroups(boolean) : void	700700	1.01	1.01	0.00	1.0 1.0100%
setColourByReferenceSeq(boolean) : void   setColourByReferenceSeq(boolean) : void	706706	1.01	1.01	0.00	1.0 1.0100%
setColourText(boolean) : void   setColourText(boolean) : void	718718	1.01	1.01	0.00	1.0 1.0100%
setConservationColourSelected(boolean) : void   setConservationColourSelected(boolean) : void	728728	1.01	1.01	0.00	1.0 1.0100%
setConservationSelected(boolean) : void   setConservationSelected(boolean) : void	741741	1.01	1.01	0.00	1.0 1.0100%
setDisplayReferenceSeq(boolean) : void   setDisplayReferenceSeq(boolean) : void	747747	1.01	1.01	0.00	1.0 1.0100%
setIncrement(int) : void   setIncrement(int) : void	759759	1.01	1.01	0.00	1.0 1.0100%
setRenderGaps(boolean) : void   setRenderGaps(boolean) : void	771771	1.01	1.01	0.00	1.0 1.0100%
setRightAlignIds(boolean) : void   setRightAlignIds(boolean) : void	777777	1.01	1.01	0.00	1.0 1.0100%
setScaleAboveWrapped(boolean) : void   setScaleAboveWrapped(boolean) : void	789789	1.01	1.01	0.00	1.0 1.0100%
setScaleLeftWrapped(boolean) : void   setScaleLeftWrapped(boolean) : void	801801	1.01	1.01	0.00	1.0 1.0100%
setScaleRightWrapped(boolean) : void   setScaleRightWrapped(boolean) : void	814814	1.01	1.01	0.00	1.0 1.0100%
setSeqNameItalics(boolean) : void   setSeqNameItalics(boolean) : void	820820	1.01	1.01	0.00	1.0 1.0100%
setShowAnnotation(boolean) : void   setShowAnnotation(boolean) : void	826826	1.01	1.01	0.00	1.0 1.0100%
setShowBoxes(boolean) : void   setShowBoxes(boolean) : void	838838	1.01	1.01	0.00	1.0 1.0100%
setShowColourText(boolean) : void   setShowColourText(boolean) : void	848848	1.01	1.01	0.00	1.0 1.0100%
setShowHiddenMarkers(boolean) : void   setShowHiddenMarkers(boolean) : void	854854	1.01	1.01	0.00	1.0 1.0100%
setShowJVSuffix(boolean) : void   setShowJVSuffix(boolean) : void	866866	1.01	1.01	0.00	1.0 1.0100%
setShowSequenceFeaturesHeight(boolean) : void   setShowSequenceFeaturesHeight(boolean) : void	872872	1.01	1.01	0.00	1.0 1.0100%
setShowSequenceFeatures(boolean) : void   setShowSequenceFeatures(boolean) : void	885885	1.01	1.01	0.00	1.0 1.0100%
setShowText(boolean) : void   setShowText(boolean) : void	897897	1.01	1.01	0.00	1.0 1.0100%
setShowUnconserved(boolean) : void   setShowUnconserved(boolean) : void	903903	1.01	1.01	0.00	1.0 1.0100%
setTextColour(Color) : void   setTextColour(Color) : void	913913	1.01	1.01	0.00	1.0 1.0100%
setTextColour2(Color) : void   setTextColour2(Color) : void	923923	1.01	1.01	0.00	1.0 1.0100%
setThreshold(int) : void   setThreshold(int) : void	935935	1.01	1.01	0.00	1.0 1.0100%
setThresholdTextColour(int) : void   setThresholdTextColour(int) : void	945945	1.01	1.01	0.00	1.0 1.0100%
setWrapAlignment(boolean) : void   setWrapAlignment(boolean) : void	957957	1.01	1.01	0.00	1.0 1.0100%
setWrappedWidth(int) : void   setWrappedWidth(int) : void	969969	1.01	1.01	0.00	1.0 1.0100%
sameStyle(ViewStyleI) : boolean   sameStyle(ViewStyleI) : boolean	975975	1.01	1.01	0.00	1.0 1.0100%
getFontName() : String   getFontName() : String	981981	1.01	1.01	0.00	1.0 1.0100%
getFontSize() : int   getFontSize() : int	987987	1.01	1.01	0.00	1.0 1.0100%
getFontStyle() : int   getFontStyle() : int	993993	1.01	1.01	0.00	1.0 1.0100%
setFontName(String) : void   setFontName(String) : void	999999	1.01	1.01	0.00	1.0 1.0100%
setFontSize(int) : void   setFontSize(int) : void	10051005	1.01	1.01	0.00	1.0 1.0100%
setFontStyle(int) : void   setFontStyle(int) : void	10121012	1.01	1.01	0.00	1.0 1.0100%
getIdWidth() : int   getIdWidth() : int	10181018	1.01	1.01	0.00	1.0 1.0100%
setIdWidth(int) : void   setIdWidth(int) : void	10281028	1.01	1.01	0.00	1.0 1.0100%
isCentreColumnLabels() : boolean   isCentreColumnLabels() : boolean	10371037	1.01	1.01	0.00	1.0 1.0100%
setCentreColumnLabels(boolean) : void   setCentreColumnLabels(boolean) : void	10471047	1.01	1.01	0.00	1.0 1.0100%
isShowDBRefs() : boolean   isShowDBRefs() : boolean	10561056	1.01	1.01	0.00	1.0 1.0100%
setShowDBRefs(boolean) : void   setShowDBRefs(boolean) : void	10661066	1.01	1.01	0.00	1.0 1.0100%
isShowNPFeats() : boolean   isShowNPFeats() : boolean	10751075	1.01	1.01	0.00	1.0 1.0100%
setShowNPFeats(boolean) : void   setShowNPFeats(boolean) : void	10851085	1.01	1.01	0.00	1.0 1.0100%
isScaleProteinAsCdna() : boolean   isScaleProteinAsCdna() : boolean	10911091	1.01	1.01	0.00	1.0 1.0100%
setScaleProteinAsCdna(boolean) : void   setScaleProteinAsCdna(boolean) : void	10971097	1.01	1.01	0.00	1.0 1.0100%
isProteinFontAsCdna() : boolean   isProteinFontAsCdna() : boolean	11031103	1.01	1.01	0.00	1.0 1.0100%
setProteinFontAsCdna(boolean) : void   setProteinFontAsCdna(boolean) : void	11091109	1.01	1.01	0.00	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.3292683	jalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlightjalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlight	1PASS
	0.30487806	jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModeljalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel	1PASS
	0.30487806	jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumnjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumn	1PASS
	0.30487806	jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumnsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumns	1PASS
	0.30487806	jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeaturejalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeature	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.viewmodel.styles;
22
23		import jalview.api.ViewStyleI;
24
25		import java.awt.Color;
26
27		/**
28		* A container for holding alignment view properties. View properties are
29		* data-independent, which means they can be safely copied between views
30		* involving different alignment data without causing exceptions in the
31		* rendering system.
32		*
33		* @author jprocter
34		*
35		*/
		88.6% Uncovered Elements: 28 (246) Complexity: 89 Complexity Density: 0.57
36		public class ViewStyle implements ViewStyleI
37		{
38		private boolean abovePIDThreshold = false;
39
40		int charHeight;
41
42		int charWidth;
43
44		int idWidth = -1;
45
46		/**
47		* gui state - changes to colour scheme propagated to all groups
48		*/
49		private boolean colourAppliesToAllGroups;
50
51		/**
52		* centre columnar annotation labels in displayed alignment annotation
53		*/
54		boolean centreColumnLabels = false;
55
56		private boolean showdbrefs;
57
58		private boolean shownpfeats;
59
60		// --------END Structure Conservation
61
62		/**
63		* colour according to the reference sequence defined on the alignment
64		*/
65		private boolean colourByReferenceSeq = false;
66
67		boolean conservationColourSelected = false;
68
69		/**
70		* show the reference sequence in the alignment view
71		*/
72		private boolean displayReferenceSeq = false;
73
74		private int increment;
75
76		/**
77		* display gap characters
78		*/
79		boolean renderGaps = true;
80
81		private boolean rightAlignIds = false;
82
83		boolean scaleAboveWrapped = false;
84
85		boolean scaleLeftWrapped = true;
86
87		boolean scaleRightWrapped = true;
88
89		boolean seqNameItalics;
90
91		/**
92		* show annotation tracks on the alignment
93		*/
94		private boolean showAnnotation = true;
95
96		/**
97		* render each residue in a coloured box
98		*/
99		boolean showBoxes = true;
100
101		/**
102		* Colour sequence text
103		*/
104		boolean showColourText = false;
105
106		/**
107		* show blue triangles
108		*/
109		boolean showHiddenMarkers = true;
110
111		/**
112		* show /start-end in ID panel
113		*/
114		boolean showJVSuffix = true;
115
116		/**
117		* scale features height according to score
118		*/
119		boolean showSeqFeaturesHeight;
120
121		/**
122		* display setting for showing/hiding sequence features on alignment view
123		*/
124		boolean showSequenceFeatures = false;
125
126		/**
127		* display sequence symbols
128		*/
129		boolean showText = true;
130
131		/**
132		* show non-conserved residues only
133		*/
134		protected boolean showUnconserved = false;
135
136		Color textColour = Color.black;
137
138		Color textColour2 = Color.white;
139
140		/**
141		* PID or consensus threshold
142		*/
143		int threshold;
144
145		/**
146		* threshold for switching between textColour & textColour2
147		*/
148		int thresholdTextColour = 0;
149
150		/**
151		* upper case characters in sequence are shown in bold
152		*/
153		boolean upperCasebold = false;
154
155		/**
156		* name of base font for view
157		*/
158		private String fontName;
159
160		/**
161		* size for base font
162		*/
163		private int fontSize;
164
165		/*
166		* If true, scale protein residues to 3 times width of cDNA bases (in
167		* SplitFrame views only)
168		*/
169		private boolean scaleProteinAsCdna = true;
170
171		/*
172		* if true, font changes to protein or cDNA are applied to both
173		* sides of a split screen
174		*/
175		private boolean proteinFontAsCdna = true;
176
177		/**
178		* Copy constructor
179		*
180		* @param vs
181		*/
		100% Uncovered Elements: 0 (41) Complexity: 1 Complexity Density: 0.02
182	172	public ViewStyle(ViewStyleI vs)...
183		{
184	172	setAbovePIDThreshold(vs.getAbovePIDThreshold());
185	172	setCentreColumnLabels(vs.isCentreColumnLabels());
186	172	setCharHeight(vs.getCharHeight());
187	172	setCharWidth(vs.getCharWidth());
188	172	setColourAppliesToAllGroups(vs.getColourAppliesToAllGroups());
189	172	setColourByReferenceSeq(vs.isColourByReferenceSeq());
190	172	setColourText(vs.getColourText());
191	172	setConservationColourSelected(vs.isConservationColourSelected());
192	172	setConservationSelected(vs.getConservationSelected());
193	172	setDisplayReferenceSeq(vs.isDisplayReferenceSeq());
194	172	setFontName(vs.getFontName());
195	172	setFontSize(vs.getFontSize());
196	172	setFontStyle(vs.getFontStyle());
197	172	setIdWidth(vs.getIdWidth());
198	172	setIncrement(vs.getIncrement());
199	172	setRenderGaps(vs.isRenderGaps());
200	172	setRightAlignIds(vs.isRightAlignIds());
201	172	setScaleAboveWrapped(vs.getScaleAboveWrapped());
202	172	setScaleLeftWrapped(vs.getScaleLeftWrapped());
203	172	setScaleProteinAsCdna(vs.isScaleProteinAsCdna());
204	172	setProteinFontAsCdna(vs.isProteinFontAsCdna());
205	172	setScaleRightWrapped(vs.getScaleRightWrapped());
206	172	setSeqNameItalics(vs.isSeqNameItalics());
207	172	setShowAnnotation(vs.isShowAnnotation());
208	172	setShowBoxes(vs.getShowBoxes());
209	172	setShowColourText(vs.isShowColourText());
210	172	setShowDBRefs(vs.isShowDBRefs());
211	172	setShowHiddenMarkers(vs.getShowHiddenMarkers());
212	172	setShowJVSuffix(vs.getShowJVSuffix());
213	172	setShowNPFeats(vs.isShowNPFeats());
214	172	setShowSequenceFeaturesHeight(vs.isShowSequenceFeaturesHeight());
215	172	setShowSequenceFeatures(vs.isShowSequenceFeatures());
216	172	setShowText(vs.getShowText());
217	172	setShowUnconserved(vs.getShowUnconserved());
218	172	setTextColour(vs.getTextColour());
219	172	setTextColour2(vs.getTextColour2());
220	172	setThreshold(vs.getThreshold());
221	172	setThresholdTextColour(vs.getThresholdTextColour());
222	172	setUpperCasebold(vs.isUpperCasebold());
223	172	setWrapAlignment(vs.getWrapAlignment());
224	172	setWrappedWidth(vs.getWrappedWidth());
225		// ViewStyle.configureFrom(this, viewStyle);
226		}
227
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
228	246	public ViewStyle()...
229		{
230		}
231
232		/**
233		* Returns true if all attributes of the ViewStyles have the same value
234		*/
		80% Uncovered Elements: 2 (10) Complexity: 3 Complexity Density: 0.38
235	7	@Override...
236		public boolean equals(Object other)
237		{
238	5	if (other == null || !(other instanceof ViewStyle))
239		{
240	0	return false;
241		}
242	5	ViewStyle vs = (ViewStyle) other;
243
244	5	boolean match = (getAbovePIDThreshold() == vs.getAbovePIDThreshold()
245		&& isCentreColumnLabels() == vs.isCentreColumnLabels()
246		&& getCharHeight() == vs.getCharHeight()
247		&& getCharWidth() == vs.getCharWidth()
248		&& getColourAppliesToAllGroups() == vs
249		.getColourAppliesToAllGroups()
250		&& isColourByReferenceSeq() == vs.isColourByReferenceSeq()
251		&& getColourText() == vs.getColourText()
252		&& isConservationColourSelected() == vs
253		.isConservationColourSelected()
254		&& getConservationSelected() == vs.getConservationSelected()
255		&& isDisplayReferenceSeq() == vs.isDisplayReferenceSeq()
256		&& getFontSize() == vs.getFontSize()
257		&& getFontStyle() == vs.getFontStyle()
258		&& getIdWidth() == vs.getIdWidth()
259		&& getIncrement() == vs.getIncrement()
260		&& isRenderGaps() == vs.isRenderGaps()
261		&& isRightAlignIds() == vs.isRightAlignIds()
262		&& getScaleAboveWrapped() == vs.getScaleAboveWrapped()
263		&& getScaleLeftWrapped() == vs.getScaleLeftWrapped()
264		&& isScaleProteinAsCdna() == vs.isScaleProteinAsCdna()
265		&& isProteinFontAsCdna() == vs.isProteinFontAsCdna()
266		&& getScaleRightWrapped() == vs.getScaleRightWrapped()
267		&& isSeqNameItalics() == vs.isSeqNameItalics()
268		&& isShowAnnotation() == vs.isShowAnnotation()
269		&& getShowBoxes() == vs.getShowBoxes()
270		&& isShowColourText() == vs.isShowColourText()
271		&& isShowDBRefs() == vs.isShowDBRefs()
272		&& getShowHiddenMarkers() == vs.getShowHiddenMarkers()
273		&& getShowJVSuffix() == vs.getShowJVSuffix()
274		&& isShowNPFeats() == vs.isShowNPFeats()
275		&& isShowSequenceFeaturesHeight() == vs
276		.isShowSequenceFeaturesHeight()
277		&& isShowSequenceFeatures() == vs.isShowSequenceFeatures()
278		&& getShowText() == vs.getShowText()
279		&& getShowUnconserved() == vs.getShowUnconserved()
280		&& getThreshold() == vs.getThreshold()
281		&& getThresholdTextColour() == vs.getThresholdTextColour()
282		&& isUpperCasebold() == vs.isUpperCasebold()
283		&& getWrapAlignment() == vs.getWrapAlignment()
284		&& getWrappedWidth() == vs.getWrappedWidth());
285		/*
286		* and compare non-primitive types; syntax below will match null with null
287		* values
288		*/
289	5	match = match && String.valueOf(getFontName())
290		.equals(String.valueOf(vs.getFontName()));
291	5	match = match && String.valueOf(getTextColour())
292		.equals(String.valueOf(vs.getTextColour()));
293	5	match = match && String.valueOf(getTextColour2())
294		.equals(String.valueOf(vs.getTextColour2()));
295	5	return match;
296		// return equivalent(this, (ViewStyle) other);
297		}
298
299		/**
300		* Overridden to ensure that whenever vs1.equals(vs2) then vs1.hashCode() ==
301		* vs2.hashCode()
302		*/
		0% Uncovered Elements: 25 (25) Complexity: 1 Complexity Density: 0.04
303	0	@Override...
304		public int hashCode()
305		{
306		/*
307		* No need to include all properties, just a selection...
308		*/
309	0	int hash = 0;
310	0	int m = 1;
311		// Boolean.hashCode returns 1231 or 1237
312	0	hash += m++ * Boolean.valueOf(this.abovePIDThreshold).hashCode();
313	0	hash += m++ * Boolean.valueOf(this.centreColumnLabels).hashCode();
314	0	hash += m++ * Boolean.valueOf(this.colourAppliesToAllGroups).hashCode();
315	0	hash += m++ * Boolean.valueOf(this.displayReferenceSeq).hashCode();
316	0	hash += m++ * Boolean.valueOf(this.renderGaps).hashCode();
317	0	hash += m++ * Boolean.valueOf(this.rightAlignIds).hashCode();
318	0	hash += m++ * Boolean.valueOf(this.scaleProteinAsCdna).hashCode();
319	0	hash += m++ * Boolean.valueOf(this.scaleRightWrapped).hashCode();
320	0	hash += m++ * Boolean.valueOf(this.seqNameItalics).hashCode();
321	0	hash += m++ * Boolean.valueOf(this.showAnnotation).hashCode();
322	0	hash += m++ * Boolean.valueOf(this.showBoxes).hashCode();
323	0	hash += m++ * Boolean.valueOf(this.showdbrefs).hashCode();
324	0	hash += m++ * Boolean.valueOf(this.showJVSuffix).hashCode();
325	0	hash += m++ * Boolean.valueOf(this.showSequenceFeatures).hashCode();
326	0	hash += m++ * Boolean.valueOf(this.showUnconserved).hashCode();
327	0	hash += m++ * Boolean.valueOf(this.wrapAlignment).hashCode();
328	0	hash += m++ * this.charHeight;
329	0	hash += m++ * this.charWidth;
330	0	hash += m++ * fontSize;
331	0	hash += m++ * fontStyle;
332	0	hash += m++ * idWidth;
333	0	hash += String.valueOf(this.fontName).hashCode();
334	0	return hash;
335		}
336
337		/**
338		* @return the upperCasebold
339		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
340	178	@Override...
341		public boolean isUpperCasebold()
342		{
343	178	return upperCasebold;
344		}
345
346		/**
347		* @param upperCasebold
348		* the upperCasebold to set
349		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
350	172	@Override...
351		public void setUpperCasebold(boolean upperCasebold)
352		{
353	172	this.upperCasebold = upperCasebold;
354		}
355
356		/**
357		* flag for wrapping
358		*/
359		boolean wrapAlignment = false;
360
361		/**
362		* number columns in wrapped alignment
363		*/
364		int wrappedWidth;
365
366		private int fontStyle;
367
368		/**
369		* GUI state
370		*
371		* @return true if percent identity threshold is applied to shading
372		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
373	729	@Override...
374		public boolean getAbovePIDThreshold()
375		{
376	729	return abovePIDThreshold;
377		}
378
379		/**
380		* DOCUMENT ME!
381		*
382		* @return DOCUMENT ME!
383		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
384	70726	@Override...
385		public int getCharHeight()
386		{
387	70726	return charHeight;
388		}
389
390		/**
391		* DOCUMENT ME!
392		*
393		* @return DOCUMENT ME!
394		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
395	745827	@Override...
396		public int getCharWidth()
397		{
398	745827	return charWidth;
399		}
400
401		/**
402		*
403		*
404		* @return flag indicating if colourchanges propagated to all groups
405		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
406	765	@Override...
407		public boolean getColourAppliesToAllGroups()
408		{
409	765	return colourAppliesToAllGroups;
410		}
411
412		/**
413		* DOCUMENT ME!
414		*
415		* @return DOCUMENT ME!
416		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
417	83746	@Override...
418		public boolean getColourText()
419		{
420	83746	return showColourText;
421		}
422
423		/**
424		* GUI state
425		*
426		* @return true if conservation based shading is enabled
427		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
428	833	@Override...
429		public boolean getConservationSelected()
430		{
431	833	return conservationColourSelected;
432		}
433
434		/**
435		* GUI State
436		*
437		* @return get scalar for bleaching colourschemes by conservation
438		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
439	178	@Override...
440		public int getIncrement()
441		{
442	178	return increment;
443		}
444
445		/**
446		* DOCUMENT ME!
447		*
448		* @return DOCUMENT ME!
449		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
450	980	@Override...
451		public boolean getScaleAboveWrapped()
452		{
453	980	return scaleAboveWrapped;
454		}
455
456		/**
457		* DOCUMENT ME!
458		*
459		* @return DOCUMENT ME!
460		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
461	840	@Override...
462		public boolean getScaleLeftWrapped()
463		{
464	840	return scaleLeftWrapped;
465		}
466
467		/**
468		* DOCUMENT ME!
469		*
470		* @return DOCUMENT ME!
471		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
472	1186	@Override...
473		public boolean getScaleRightWrapped()
474		{
475	1186	return scaleRightWrapped;
476		}
477
478		/**
479		* DOCUMENT ME!
480		*
481		* @return DOCUMENT ME!
482		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
483	87437	@Override...
484		public boolean getShowBoxes()
485		{
486	87437	return showBoxes;
487		}
488
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
489	1410	@Override...
490		public boolean getShowHiddenMarkers()
491		{
492	1410	return showHiddenMarkers;
493		}
494
495		/**
496		* DOCUMENT ME!
497		*
498		* @return DOCUMENT ME!
499		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
500	9448	@Override...
501		public boolean getShowJVSuffix()
502		{
503	9448	return showJVSuffix;
504		}
505
506		/**
507		* DOCUMENT ME!
508		*
509		* @return DOCUMENT ME!
510		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
511	84122	@Override...
512		public boolean getShowText()
513		{
514	84122	return showText;
515		}
516
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
517	82793	@Override...
518		public boolean getShowUnconserved()
519		{
520	82793	return showUnconserved;
521		}
522
523		/**
524		* @return the textColour
525		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
526	354723	@Override...
527		public Color getTextColour()
528		{
529	354723	return textColour;
530		}
531
532		/**
533		* @return the textColour2
534		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
535	200	@Override...
536		public Color getTextColour2()
537		{
538	200	return textColour2;
539		}
540
541		/**
542		* DOCUMENT ME!
543		*
544		* @return DOCUMENT ME!
545		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
546	178	@Override...
547		public int getThreshold()
548		{
549	178	return threshold;
550		}
551
552		/**
553		* @return the thresholdTextColour
554		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
555	83746	@Override...
556		public int getThresholdTextColour()
557		{
558	83746	return thresholdTextColour;
559		}
560
561		/**
562		* DOCUMENT ME!
563		*
564		* @return DOCUMENT ME!
565		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
566	8745	@Override...
567		public boolean getWrapAlignment()
568		{
569	8745	return wrapAlignment;
570		}
571
572		/**
573		* DOCUMENT ME!
574		*
575		* @return DOCUMENT ME!
576		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
577	178	@Override...
578		public int getWrappedWidth()
579		{
580	178	return wrappedWidth;
581		}
582
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
583	183	@Override...
584		public boolean isColourByReferenceSeq()
585		{
586	183	return colourByReferenceSeq;
587		}
588
589		/**
590		* @return the conservationColourSelected
591		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
592	251	@Override...
593		public boolean isConservationColourSelected()
594		{
595	251	return conservationColourSelected;
596		}
597
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
598	792	@Override...
599		public boolean isDisplayReferenceSeq()
600		{
601	792	return displayReferenceSeq;
602		}
603
604		/**
605		* @return the renderGaps
606		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
607	1604	@Override...
608		public boolean isRenderGaps()
609		{
610	1604	return renderGaps;
611		}
612
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
613	7501	@Override...
614		public boolean isRightAlignIds()
615		{
616	7501	return rightAlignIds;
617		}
618
619		/**
620		* @return the seqNameItalics
621		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
622	1157	@Override...
623		public boolean isSeqNameItalics()
624		{
625	1157	return seqNameItalics;
626		}
627
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
628	2297	@Override...
629		public boolean isShowAnnotation()
630		{
631	2297	return showAnnotation;
632		}
633
634		/**
635		* @return the showColourText
636		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
637	554	@Override...
638		public boolean isShowColourText()
639		{
640	554	return showColourText;
641		}
642
643		/**
644		* @return the showSeqFeaturesHeight
645		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
646	178	@Override...
647		public boolean isShowSequenceFeaturesHeight()
648		{
649	178	return showSeqFeaturesHeight;
650		}
651
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
652	10164	@Override...
653		public boolean isShowSequenceFeatures()
654		{
655	10164	return showSequenceFeatures;
656		}
657
658		/**
659		* GUI state
660		*
661		*
662		* @param b
663		* indicate if percent identity threshold is applied to shading
664		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
665	253	@Override...
666		public void setAbovePIDThreshold(boolean b)
667		{
668	253	abovePIDThreshold = b;
669		}
670
671		/**
672		* DOCUMENT ME!
673		*
674		* @param h
675		* DOCUMENT ME!
676		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
677	491	@Override...
678		public void setCharHeight(int h)
679		{
680	491	this.charHeight = h;
681		}
682
683		/**
684		* DOCUMENT ME!
685		*
686		* @param w
687		* DOCUMENT ME!
688		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
689	491	@Override...
690		public void setCharWidth(int w)
691		{
692	491	this.charWidth = w;
693		}
694
695		/**
696		* @param value
697		* indicating if subsequent colourscheme changes will be propagated
698		* to all groups
699		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
700	319	@Override...
701		public void setColourAppliesToAllGroups(boolean b)
702		{
703	319	colourAppliesToAllGroups = b;
704		}
705
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
706	182	@Override...
707		public void setColourByReferenceSeq(boolean colourByReferenceSeq)
708		{
709	182	this.colourByReferenceSeq = colourByReferenceSeq;
710		}
711
712		/**
713		* DOCUMENT ME!
714		*
715		* @param state
716		* DOCUMENT ME!
717		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
718	244	@Override...
719		public void setColourText(boolean state)
720		{
721	244	showColourText = state;
722		}
723
724		/**
725		* @param conservationColourSelected
726		* the conservationColourSelected to set
727		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
728	172	@Override...
729		public void setConservationColourSelected(
730		boolean conservationColourSelected)
731		{
732	172	this.conservationColourSelected = conservationColourSelected;
733		}
734
735		/**
736		* GUI state
737		*
738		* @param b
739		* enable conservation based shading
740		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
741	252	@Override...
742		public void setConservationSelected(boolean b)
743		{
744	252	conservationColourSelected = b;
745		}
746
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
747	182	@Override...
748		public void setDisplayReferenceSeq(boolean displayReferenceSeq)
749		{
750	182	this.displayReferenceSeq = displayReferenceSeq;
751		}
752
753		/**
754		*
755		* @param inc
756		* set the scalar for bleaching colourschemes according to degree of
757		* conservation
758		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
759	244	@Override...
760		public void setIncrement(int inc)
761		{
762	244	increment = inc;
763		}
764
765		/**
766		* DOCUMENT ME!
767		*
768		* @param state
769		* DOCUMENT ME!
770		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
771	244	@Override...
772		public void setRenderGaps(boolean state)
773		{
774	244	renderGaps = state;
775		}
776
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
777	488	@Override...
778		public void setRightAlignIds(boolean rightAlignIds)
779		{
780	488	this.rightAlignIds = rightAlignIds;
781		}
782
783		/**
784		* DOCUMENT ME!
785		*
786		* @param b
787		* DOCUMENT ME!
788		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
789	177	@Override...
790		public void setScaleAboveWrapped(boolean b)
791		{
792	177	scaleAboveWrapped = b;
793		}
794
795		/**
796		* DOCUMENT ME!
797		*
798		* @param b
799		* DOCUMENT ME!
800		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
801	177	@Override...
802		public void setScaleLeftWrapped(boolean b)
803		{
804	177	scaleLeftWrapped = b;
805		}
806
807		/**
808		*
809		*
810		* @param scaleRightWrapped
811		* - true or false
812		*/
813
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
814	175	@Override...
815		public void setScaleRightWrapped(boolean b)
816		{
817	175	scaleRightWrapped = b;
818		}
819
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
820	416	@Override...
821		public void setSeqNameItalics(boolean italics)
822		{
823	416	seqNameItalics = italics;
824		}
825
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
826	563	@Override...
827		public void setShowAnnotation(boolean b)
828		{
829	563	showAnnotation = b;
830		}
831
832		/**
833		* DOCUMENT ME!
834		*
835		* @param state
836		* DOCUMENT ME!
837		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
838	244	@Override...
839		public void setShowBoxes(boolean state)
840		{
841	244	showBoxes = state;
842		}
843
844		/**
845		* @param showColourText
846		* the showColourText to set
847		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
848	172	@Override...
849		public void setShowColourText(boolean showColourText)
850		{
851	172	this.showColourText = showColourText;
852		}
853
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
854	172	@Override...
855		public void setShowHiddenMarkers(boolean show)
856		{
857	172	showHiddenMarkers = show;
858		}
859
860		/**
861		* DOCUMENT ME!
862		*
863		* @param b
864		* DOCUMENT ME!
865		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
866	488	@Override...
867		public void setShowJVSuffix(boolean b)
868		{
869	488	showJVSuffix = b;
870		}
871
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
872	172	@Override...
873		public void setShowSequenceFeaturesHeight(boolean selected)
874		{
875	172	showSeqFeaturesHeight = selected;
876
877		}
878
879		/**
880		* set the flag
881		*
882		* @param b
883		* features are displayed if true
884		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
885	286	@Override...
886		public void setShowSequenceFeatures(boolean b)
887		{
888	286	showSequenceFeatures = b;
889		}
890
891		/**
892		* DOCUMENT ME!
893		*
894		* @param state
895		* DOCUMENT ME!
896		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
897	244	@Override...
898		public void setShowText(boolean state)
899		{
900	244	showText = state;
901		}
902
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
903	488	@Override...
904		public void setShowUnconserved(boolean showunconserved)
905		{
906	488	showUnconserved = showunconserved;
907		}
908
909		/**
910		* @param textColour
911		* the textColour to set
912		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
913	244	@Override...
914		public void setTextColour(Color textColour)
915		{
916	244	this.textColour = textColour;
917		}
918
919		/**
920		* @param textColour2
921		* the textColour2 to set
922		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
923	244	@Override...
924		public void setTextColour2(Color textColour2)
925		{
926	244	this.textColour2 = textColour2;
927		}
928
929		/**
930		* DOCUMENT ME!
931		*
932		* @param thresh
933		* DOCUMENT ME!
934		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
935	265	@Override...
936		public void setThreshold(int thresh)
937		{
938	265	threshold = thresh;
939		}
940
941		/**
942		* @param thresholdTextColour
943		* the thresholdTextColour to set
944		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
945	244	@Override...
946		public void setThresholdTextColour(int thresholdTextColour)
947		{
948	244	this.thresholdTextColour = thresholdTextColour;
949		}
950
951		/**
952		* DOCUMENT ME!
953		*
954		* @param state
955		* DOCUMENT ME!
956		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
957	494	@Override...
958		public void setWrapAlignment(boolean state)
959		{
960	494	wrapAlignment = state;
961		}
962
963		/**
964		* DOCUMENT ME!
965		*
966		* @param w
967		* DOCUMENT ME!
968		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
969	323	@Override...
970		public void setWrappedWidth(int w)
971		{
972	323	this.wrappedWidth = w;
973		}
974
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
975	3	@Override...
976		public boolean sameStyle(ViewStyleI that)
977		{
978	3	return this.equals(that);
979		}
980
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
981	251	@Override...
982		public String getFontName()
983		{
984	251	return fontName;
985		}
986
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
987	251	@Override...
988		public int getFontSize()
989		{
990	251	return fontSize;
991		}
992
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
993	251	@Override...
994		public int getFontStyle()
995		{
996	251	return fontStyle;
997		}
998
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
999	564	@Override...
1000		public void setFontName(String name)
1001		{
1002	564	fontName = name;
1003		}
1004
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1005	564	@Override...
1006		public void setFontSize(int size)
1007		{
1008	564	fontSize = size;
1009
1010		}
1011
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1012	564	@Override...
1013		public void setFontStyle(int style)
1014		{
1015	564	fontStyle = style;
1016		}
1017
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1018	1008	@Override...
1019		public int getIdWidth()
1020		{
1021	1008	return idWidth;
1022		}
1023
1024		/**
1025		* @param idWidth
1026		* the idWidth to set
1027		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1028	360	@Override...
1029		public void setIdWidth(int idWidth)
1030		{
1031	360	this.idWidth = idWidth;
1032		}
1033
1034		/**
1035		* @return the centreColumnLabels
1036		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1037	1478	@Override...
1038		public boolean isCentreColumnLabels()
1039		{
1040	1478	return centreColumnLabels;
1041		}
1042
1043		/**
1044		* @param centreColumnLabels
1045		* the centreColumnLabels to set
1046		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1047	416	@Override...
1048		public void setCentreColumnLabels(boolean centreColumnLabels)
1049		{
1050	416	this.centreColumnLabels = centreColumnLabels;
1051		}
1052
1053		/**
1054		* @return the showdbrefs
1055		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1056	576	@Override...
1057		public boolean isShowDBRefs()
1058		{
1059	576	return showdbrefs;
1060		}
1061
1062		/**
1063		* @param showdbrefs
1064		* the showdbrefs to set
1065		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1066	488	@Override...
1067		public void setShowDBRefs(boolean showdbrefs)
1068		{
1069	488	this.showdbrefs = showdbrefs;
1070		}
1071
1072		/**
1073		* @return the shownpfeats
1074		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1075	576	@Override...
1076		public boolean isShowNPFeats()
1077		{
1078	576	return shownpfeats;
1079		}
1080
1081		/**
1082		* @param shownpfeats
1083		* the shownpfeats to set
1084		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1085	488	@Override...
1086		public void setShowNPFeats(boolean shownpfeats)
1087		{
1088	488	this.shownpfeats = shownpfeats;
1089		}
1090
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1091	200	@Override...
1092		public boolean isScaleProteinAsCdna()
1093		{
1094	200	return this.scaleProteinAsCdna;
1095		}
1096
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1097	488	@Override...
1098		public void setScaleProteinAsCdna(boolean b)
1099		{
1100	488	this.scaleProteinAsCdna = b;
1101		}
1102
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1103	178	@Override...
1104		public boolean isProteinFontAsCdna()
1105		{
1106	178	return proteinFontAsCdna;
1107		}
1108
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
1109	172	@Override...
1110		public void setProteinFontAsCdna(boolean b)
1111		{
1112	172	proteinFontAsCdna = b;
1113		}
1114		}