Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
ViewStyleI	25	0	0	0	-1.0 -	Show methods

Class ViewStyleI

Class ViewStyleI	Line # 25	Total Statements 0	Complexity 0	Uncovered Elements 0	TOTAL Coverage -1.0 -

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.api;
22
23		import java.awt.Color;
24
		- Uncovered Elements: 0 (0) Complexity: 0 Complexity Density: -
25		public interface ViewStyleI
26		{
27
28		void setColourAppliesToAllGroups(boolean b);
29
30		boolean getColourAppliesToAllGroups();
31
32		boolean getAbovePIDThreshold();
33
34		void setIncrement(int inc);
35
36		int getIncrement();
37
38		boolean getConservationSelected();
39
40		void setConservationSelected(boolean b);
41
42		void setShowHiddenMarkers(boolean show);
43
44		boolean getShowHiddenMarkers();
45
46		void setScaleRightWrapped(boolean b);
47
48		void setScaleLeftWrapped(boolean b);
49
50		void setScaleAboveWrapped(boolean b);
51
52		boolean getScaleLeftWrapped();
53
54		boolean getScaleAboveWrapped();
55
56		boolean getScaleRightWrapped();
57
58		void setAbovePIDThreshold(boolean b);
59
60		void setThreshold(int thresh);
61
62		int getThreshold();
63
64		boolean getShowJVSuffix();
65
66		void setShowJVSuffix(boolean b);
67
68		void setWrapAlignment(boolean state);
69
70		void setShowText(boolean state);
71
72		void setRenderGaps(boolean state);
73
74		boolean getColourText();
75
76		void setColourText(boolean state);
77
78		void setShowBoxes(boolean state);
79
80		boolean getWrapAlignment();
81
82		boolean getShowText();
83
84		int getWrappedWidth();
85
86		void setWrappedWidth(int w);
87
88		int getCharHeight();
89
90		void setCharHeight(int h);
91
92		int getCharWidth();
93
94		void setCharWidth(int w);
95
96		boolean getShowBoxes();
97
98		boolean getShowUnconserved();
99
100		void setShowUnconserved(boolean showunconserved);
101
102		/**
103		* @return true if a reference sequence is set and should be displayed
104		*/
105		boolean isDisplayReferenceSeq();
106
107		/**
108		* @return set the flag for displaying reference sequences when they are
109		* available
110		*/
111		void setDisplayReferenceSeq(boolean displayReferenceSeq);
112
113		/**
114		* @return true if colourschemes should render according to reference sequence
115		* rather than consensus if available
116		*/
117		boolean isColourByReferenceSeq();
118
119		void setSeqNameItalics(boolean default1);
120
121		void setShowSequenceFeatures(boolean b);
122
123		boolean isShowSequenceFeatures();
124
125		boolean isRightAlignIds();
126
127		void setRightAlignIds(boolean rightAlignIds);
128
129		/**
130		* Returns true if annotation panel should be shown below alignment
131		*
132		* @return
133		*/
134		boolean isShowAnnotation();
135
136		/**
137		* Set flag for whether annotation panel should be shown below alignment
138		*
139		* @param b
140		*/
141		void setShowAnnotation(boolean b);
142
143		void setShowSequenceFeaturesHeight(boolean selected);
144
145		/**
146		* @return true set flag for deciding if colourschemes should render according
147		* to reference sequence rather than consensus if available
148		*/
149		void setColourByReferenceSeq(boolean colourByReferenceSeq);
150
151		Color getTextColour();
152
153		Color getTextColour2();
154
155		int getThresholdTextColour();
156
157		boolean isConservationColourSelected();
158
159		boolean isRenderGaps();
160
161		boolean isShowColourText();
162
163		boolean isShowSequenceFeaturesHeight();
164
165		void setConservationColourSelected(boolean conservationColourSelected);
166
167		void setShowColourText(boolean showColourText);
168
169		void setTextColour(Color textColour);
170
171		void setThresholdTextColour(int thresholdTextColour);
172
173		void setTextColour2(Color textColour2);
174
175		boolean isSeqNameItalics();
176
177		void setUpperCasebold(boolean upperCasebold);
178
179		boolean isUpperCasebold();
180
181		boolean sameStyle(ViewStyleI them);
182
183		void setFontName(String name);
184
185		void setFontStyle(int style);
186
187		void setFontSize(int size);
188
189		int getFontStyle();
190
191		String getFontName();
192
193		int getFontSize();
194
195		/**
196		* @return width of Sequence and Annotation ID margin. If less than zero, then
197		* width will be autocalculated
198		*/
199		int getIdWidth();
200
201		/**
202		* Set width if
203		*
204		* @param i
205		*/
206
207		void setIdWidth(int i);
208
209		/**
210		* centre columnar annotation labels in displayed alignment annotation
211		*/
212		boolean isCentreColumnLabels();
213
214		/**
215		* centre columnar annotation labels in displayed alignment annotation
216		*/
217		void setCentreColumnLabels(boolean centreColumnLabels);
218
219		/**
220		* enable or disable the display of Database Cross References in the sequence
221		* ID tooltip
222		*/
223		void setShowDBRefs(boolean showdbrefs);
224
225		/**
226		*
227		* @return true if Database References are to be displayed on tooltips.
228		*/
229		boolean isShowDBRefs();
230
231		/**
232		*
233		* @return true if Non-positional features are to be displayed on tooltips.
234		*/
235		boolean isShowNPFeats();
236
237		/**
238		* enable or disable the display of Non-Positional sequence features in the
239		* sequence ID tooltip
240		*
241		* @param show
242		*/
243		void setShowNPFeats(boolean shownpfeats);
244
245		/**
246		* Get flag to scale protein residues 3 times the width of cDNA bases (only
247		* applicable in SplitFrame views)
248		*
249		* @return
250		*/
251		boolean isScaleProteinAsCdna();
252
253		/**
254		* Set flag to scale protein residues 3 times the width of cDNA bases (only
255		* applicable in SplitFrame views)
256		*
257		* @return
258		*/
259		void setScaleProteinAsCdna(boolean b);
260
261		/**
262		* Answers true if split screen protein and cDNA use the same font
263		*
264		* @return
265		*/
266		boolean isProteinFontAsCdna();
267
268		/**
269		* Set the flag for whether split screen protein and cDNA use the same font
270		*
271		* @return
272		*/
273		void setProteinFontAsCdna(boolean b);
274		}