Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
RNAInteractionColourScheme	30	9	7	9	0.440%	Show methods

Class RNAInteractionColourScheme

Class RNAInteractionColourScheme	Line # 30	Total Statements 9	Complexity 7	Uncovered Elements 9	TOTAL Coverage 0.440%
RNAInteractionColourScheme()   RNAInteractionColourScheme()	3232	1.01	1.01	0.00	1.0 1.0100%
findColour(char) : Color   findColour(char) : Color	3737	1.01	1.01	1.01	0.0 0.00%
findColour(char,int,SequenceI) : Color   findColour(char,int,SequenceI) : Color	4444	4.04	2.02	4.04	0.0 0.00%
isNucleotideSpecific() : boolean   isNucleotideSpecific() : boolean	5959	1.01	1.01	0.00	1.0 1.0100%
getSchemeName() : String   getSchemeName() : String	6565	1.01	1.01	0.00	1.0 1.0100%
getInstance(AnnotatedCollectionI,Map<SequenceI, SequenceCollectionI>) : ColourSchemeI   getInstance(AnnotatedCollectionI,Map<SequenceI, SequenceCollectionI>) : ColourSchemeI	7575	1.01	1.01	1.01	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.26666668	jalview.schemes.ResidueColourSchemeTest.testIsApplicableTojalview.schemes.ResidueColourSchemeTest.testIsApplicableTo	1PASS
	0.26666668	jalview.schemes.ColourSchemePropertyTest.testGetColourNamejalview.schemes.ColourSchemePropertyTest.testGetColourName	1PASS
	0.26666668	jalview.schemes.ResidueColourSchemeTest.testGetNamejalview.schemes.ResidueColourSchemeTest.testGetName	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.schemes;
22
23		import jalview.datamodel.AnnotatedCollectionI;
24		import jalview.datamodel.SequenceCollectionI;
25		import jalview.datamodel.SequenceI;
26
27		import java.awt.Color;
28		import java.util.Map;
29
		40% Uncovered Elements: 9 (15) Complexity: 7 Complexity Density: 0.78
30		public class RNAInteractionColourScheme extends ResidueColourScheme
31		{
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
32	5	public RNAInteractionColourScheme()...
33		{
34	5	super();
35		}
36
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
37	0	@Override...
38		public Color findColour(char c)
39		{
40		// FIXME this is just a copy of NucleotideColourScheme
41	0	return colors[ResidueProperties.nucleotideIndex[c]];
42		}
43
		0% Uncovered Elements: 4 (4) Complexity: 2 Complexity Density: 0.5
44	0	@Override...
45		public Color findColour(char c, int j, SequenceI seq)
46		{
47		// FIXME this is just a copy of NucleotideColourScheme
48	0	Color currentColour = Color.white;
49	0	try
50		{
51	0	currentColour = colors[ResidueProperties.nucleotideIndex[c]];
52		} catch (Exception ex)
53		{
54		}
55
56	0	return currentColour;
57		}
58
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
59	3	@Override...
60		public boolean isNucleotideSpecific()
61		{
62	3	return true;
63		}
64
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
65	2	@Override...
66		public String getSchemeName()
67		{
68	2	return "RNA Interaction type";
69		}
70
71		/**
72		* Returns a new instance of this colour scheme with which the given data may
73		* be coloured
74		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
75	0	@Override...
76		public ColourSchemeI getInstance(AnnotatedCollectionI coll,
77		Map<SequenceI, SequenceCollectionI> hrs)
78		{
79	0	return new RNAInteractionColourScheme();
80		}
81		}