Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
DnaCodonTests	32	7	4	0	1.0100%	Show methods

Class DnaCodonTests

Class DnaCodonTests	Line # 32	Total Statements 7	Complexity 4	Uncovered Elements 0	TOTAL Coverage 1.0100%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	3535	2.02	1.01	0.00	1.0 1.0100%
testAmbiguityCodeGeneration() : void   testAmbiguityCodeGeneration() : void	4242	1.01	1.01	0.00	1.0 1.0100%
testAmbiguityCodon() : void   testAmbiguityCodon() : void	4848	2.02	1.01	0.00	1.0 1.0100%
regenerateCodonTable() : void   regenerateCodonTable() : void	5858	2.02	1.01	0.00	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.27272728	jalview.schemes.DnaCodonTests.regenerateCodonTablejalview.schemes.DnaCodonTests.regenerateCodonTable	1PASS
	0.27272728	jalview.schemes.DnaCodonTests.testAmbiguityCodonjalview.schemes.DnaCodonTests.testAmbiguityCodon	1PASS
	0.18181819	jalview.schemes.DnaCodonTests.testAmbiguityCodeGenerationjalview.schemes.DnaCodonTests.testAmbiguityCodeGeneration	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.schemes;
22
23		import static org.testng.AssertJUnit.assertTrue;
24
25		import jalview.gui.JvOptionPane;
26
27		import java.util.Map;
28
29		import org.testng.annotations.BeforeClass;
30		import org.testng.annotations.Test;
31
		100% Uncovered Elements: 0 (11) Complexity: 4 Complexity Density: 0.57
32		public class DnaCodonTests
33		{
34
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
35	1	@BeforeClass(alwaysRun = true)...
36		public void setUpJvOptionPane()
37		{
38	1	JvOptionPane.setInteractiveMode(false);
39	1	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
40		}
41
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1 1PASS
42	1	@Test(groups = { "Functional" })...
43		public void testAmbiguityCodeGeneration()
44		{
45	1	assertTrue(ResidueProperties.ambiguityCodes.size() > 0);
46		}
47
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5 1PASS
48	1	@Test(groups = { "Functional" })...
49		public void testAmbiguityCodon()
50		{
51	1	for (String ac : ResidueProperties.ambiguityCodes.keySet())
52		{
53	11	assertTrue("Couldn't resolve GGN as glycine codon",
54		ResidueProperties.codonHash2.get("GG" + ac).equals("G"));
55		}
56		}
57
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5 1PASS
58	1	@Test(groups = { "Functional" })...
59		public void regenerateCodonTable()
60		{
61	1	for (Map.Entry<String, String> codon : ResidueProperties.codonHash2
62		.entrySet())
63		{
64	176	System.out.println("ResidueProperties.codonHash2.set(\""
65		+ codon.getKey() + "\", \"" + codon.getValue() + "\");");
66		}
67		}
68		}