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package jalview.schemabinding.version2.descriptors; |
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import jalview.schemabinding.version2.JalviewModelSequence; |
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@version |
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| 73.5% |
Uncovered Elements: 43 (162) |
Complexity: 43 |
Complexity Density: 0.33 |
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public class JalviewModelSequenceDescriptor extends |
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org.exolab.castor.xml.util.XMLClassDescriptorImpl |
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{ |
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private boolean _elementDefinition; |
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private java.lang.String _nsPrefix; |
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private java.lang.String _nsURI; |
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private java.lang.String _xmlName; |
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| 100% |
Uncovered Elements: 0 (60) |
Complexity: 1 |
Complexity Density: 0.02 |
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public JalviewModelSequenceDescriptor()... |
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{ |
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super(); |
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_nsURI = "www.jalview.org"; |
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_elementDefinition = false; |
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setCompositorAsSequence(); |
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org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null; |
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org.exolab.castor.mapping.FieldHandler handler = null; |
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org.exolab.castor.xml.FieldValidator fieldValidator = null; |
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desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
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jalview.schemabinding.version2.JSeq.class, "_JSeqList", "JSeq", |
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org.exolab.castor.xml.NodeType.Element); |
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handler = new org.exolab.castor.xml.XMLFieldHandler() |
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{ |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
74 |
58 |
public java.lang.Object getValue(java.lang.Object object)... |
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throws IllegalStateException |
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{ |
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JalviewModelSequence target = (JalviewModelSequence) object; |
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return target.getJSeq(); |
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} |
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| 75% |
Uncovered Elements: 1 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
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1265 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
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throws IllegalStateException, IllegalArgumentException |
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{ |
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1265 |
try |
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{ |
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1265 |
JalviewModelSequence target = (JalviewModelSequence) object; |
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1265 |
target.addJSeq((jalview.schemabinding.version2.JSeq) value); |
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} catch (java.lang.Exception ex) |
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{ |
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throw new IllegalStateException(ex.toString()); |
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} |
92 |
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} |
93 |
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| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
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0 |
public void resetValue(Object object) throws IllegalStateException,... |
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IllegalArgumentException |
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{ |
97 |
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try |
98 |
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{ |
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JalviewModelSequence target = (JalviewModelSequence) object; |
100 |
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target.removeAllJSeq(); |
101 |
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} catch (java.lang.Exception ex) |
102 |
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{ |
103 |
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throw new IllegalStateException(ex.toString()); |
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} |
105 |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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1265 |
public java.lang.Object newInstance(java.lang.Object parent)... |
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{ |
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return new jalview.schemabinding.version2.JSeq(); |
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} |
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}; |
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desc.setHandler(handler); |
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desc.setNameSpaceURI("www.jalview.org"); |
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desc.setMultivalued(true); |
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addFieldDescriptor(desc); |
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fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
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fieldValidator.setMinOccurs(0); |
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{ |
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} |
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desc.setValidator(fieldValidator); |
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desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
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jalview.schemabinding.version2.JGroup.class, "_JGroupList", |
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"JGroup", org.exolab.castor.xml.NodeType.Element); |
127 |
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handler = new org.exolab.castor.xml.XMLFieldHandler() |
128 |
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{ |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
129 |
58 |
public java.lang.Object getValue(java.lang.Object object)... |
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throws IllegalStateException |
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{ |
132 |
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JalviewModelSequence target = (JalviewModelSequence) object; |
133 |
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return target.getJGroup(); |
134 |
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} |
135 |
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| 75% |
Uncovered Elements: 1 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
136 |
62 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
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throws IllegalStateException, IllegalArgumentException |
138 |
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{ |
139 |
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try |
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{ |
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JalviewModelSequence target = (JalviewModelSequence) object; |
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target.addJGroup((jalview.schemabinding.version2.JGroup) value); |
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} catch (java.lang.Exception ex) |
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{ |
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throw new IllegalStateException(ex.toString()); |
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} |
147 |
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} |
148 |
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| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
149 |
0 |
public void resetValue(Object object) throws IllegalStateException,... |
150 |
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IllegalArgumentException |
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{ |
152 |
0 |
try |
153 |
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{ |
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JalviewModelSequence target = (JalviewModelSequence) object; |
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target.removeAllJGroup(); |
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} catch (java.lang.Exception ex) |
157 |
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{ |
158 |
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throw new IllegalStateException(ex.toString()); |
159 |
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} |
160 |
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} |
161 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
162 |
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public java.lang.Object newInstance(java.lang.Object parent)... |
163 |
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{ |
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return new jalview.schemabinding.version2.JGroup(); |
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} |
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}; |
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desc.setHandler(handler); |
168 |
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desc.setNameSpaceURI("www.jalview.org"); |
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desc.setMultivalued(true); |
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addFieldDescriptor(desc); |
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172 |
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173 |
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fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
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fieldValidator.setMinOccurs(0); |
175 |
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{ |
176 |
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} |
177 |
166 |
desc.setValidator(fieldValidator); |
178 |
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|
179 |
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desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
180 |
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jalview.schemabinding.version2.Viewport.class, "_viewportList", |
181 |
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"Viewport", org.exolab.castor.xml.NodeType.Element); |
182 |
166 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
183 |
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{ |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
184 |
58 |
public java.lang.Object getValue(java.lang.Object object)... |
185 |
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throws IllegalStateException |
186 |
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{ |
187 |
58 |
JalviewModelSequence target = (JalviewModelSequence) object; |
188 |
58 |
return target.getViewport(); |
189 |
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} |
190 |
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| 75% |
Uncovered Elements: 1 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
191 |
69 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
192 |
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throws IllegalStateException, IllegalArgumentException |
193 |
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{ |
194 |
69 |
try |
195 |
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{ |
196 |
69 |
JalviewModelSequence target = (JalviewModelSequence) object; |
197 |
69 |
target.addViewport((jalview.schemabinding.version2.Viewport) value); |
198 |
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} catch (java.lang.Exception ex) |
199 |
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{ |
200 |
0 |
throw new IllegalStateException(ex.toString()); |
201 |
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} |
202 |
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} |
203 |
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| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
204 |
0 |
public void resetValue(Object object) throws IllegalStateException,... |
205 |
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IllegalArgumentException |
206 |
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{ |
207 |
0 |
try |
208 |
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{ |
209 |
0 |
JalviewModelSequence target = (JalviewModelSequence) object; |
210 |
0 |
target.removeAllViewport(); |
211 |
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} catch (java.lang.Exception ex) |
212 |
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{ |
213 |
0 |
throw new IllegalStateException(ex.toString()); |
214 |
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} |
215 |
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} |
216 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
217 |
69 |
public java.lang.Object newInstance(java.lang.Object parent)... |
218 |
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{ |
219 |
69 |
return new jalview.schemabinding.version2.Viewport(); |
220 |
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} |
221 |
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}; |
222 |
166 |
desc.setHandler(handler); |
223 |
166 |
desc.setNameSpaceURI("www.jalview.org"); |
224 |
166 |
desc.setMultivalued(true); |
225 |
166 |
addFieldDescriptor(desc); |
226 |
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227 |
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228 |
166 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
229 |
166 |
fieldValidator.setMinOccurs(0); |
230 |
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{ |
231 |
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} |
232 |
166 |
desc.setValidator(fieldValidator); |
233 |
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|
234 |
166 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
235 |
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jalview.schemabinding.version2.UserColours.class, |
236 |
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"_userColoursList", "UserColours", |
237 |
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org.exolab.castor.xml.NodeType.Element); |
238 |
166 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
239 |
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{ |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
240 |
58 |
public java.lang.Object getValue(java.lang.Object object)... |
241 |
|
throws IllegalStateException |
242 |
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{ |
243 |
58 |
JalviewModelSequence target = (JalviewModelSequence) object; |
244 |
58 |
return target.getUserColours(); |
245 |
|
} |
246 |
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| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
247 |
0 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
248 |
|
throws IllegalStateException, IllegalArgumentException |
249 |
|
{ |
250 |
0 |
try |
251 |
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{ |
252 |
0 |
JalviewModelSequence target = (JalviewModelSequence) object; |
253 |
0 |
target.addUserColours((jalview.schemabinding.version2.UserColours) value); |
254 |
|
} catch (java.lang.Exception ex) |
255 |
|
{ |
256 |
0 |
throw new IllegalStateException(ex.toString()); |
257 |
|
} |
258 |
|
} |
259 |
|
|
|
|
| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
260 |
0 |
public void resetValue(Object object) throws IllegalStateException,... |
261 |
|
IllegalArgumentException |
262 |
|
{ |
263 |
0 |
try |
264 |
|
{ |
265 |
0 |
JalviewModelSequence target = (JalviewModelSequence) object; |
266 |
0 |
target.removeAllUserColours(); |
267 |
|
} catch (java.lang.Exception ex) |
268 |
|
{ |
269 |
0 |
throw new IllegalStateException(ex.toString()); |
270 |
|
} |
271 |
|
} |
272 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
273 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
274 |
|
{ |
275 |
0 |
return new jalview.schemabinding.version2.UserColours(); |
276 |
|
} |
277 |
|
}; |
278 |
166 |
desc.setHandler(handler); |
279 |
166 |
desc.setNameSpaceURI("www.jalview.org"); |
280 |
166 |
desc.setMultivalued(true); |
281 |
166 |
addFieldDescriptor(desc); |
282 |
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|
283 |
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|
284 |
166 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
285 |
166 |
fieldValidator.setMinOccurs(0); |
286 |
|
{ |
287 |
|
} |
288 |
166 |
desc.setValidator(fieldValidator); |
289 |
|
|
290 |
166 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
291 |
|
jalview.schemabinding.version2.Tree.class, "_treeList", "tree", |
292 |
|
org.exolab.castor.xml.NodeType.Element); |
293 |
166 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
294 |
|
{ |
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
295 |
58 |
public java.lang.Object getValue(java.lang.Object object)... |
296 |
|
throws IllegalStateException |
297 |
|
{ |
298 |
58 |
JalviewModelSequence target = (JalviewModelSequence) object; |
299 |
58 |
return target.getTree(); |
300 |
|
} |
301 |
|
|
|
|
| 75% |
Uncovered Elements: 1 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
302 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
303 |
|
throws IllegalStateException, IllegalArgumentException |
304 |
|
{ |
305 |
12 |
try |
306 |
|
{ |
307 |
12 |
JalviewModelSequence target = (JalviewModelSequence) object; |
308 |
12 |
target.addTree((jalview.schemabinding.version2.Tree) value); |
309 |
|
} catch (java.lang.Exception ex) |
310 |
|
{ |
311 |
0 |
throw new IllegalStateException(ex.toString()); |
312 |
|
} |
313 |
|
} |
314 |
|
|
|
|
| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
315 |
0 |
public void resetValue(Object object) throws IllegalStateException,... |
316 |
|
IllegalArgumentException |
317 |
|
{ |
318 |
0 |
try |
319 |
|
{ |
320 |
0 |
JalviewModelSequence target = (JalviewModelSequence) object; |
321 |
0 |
target.removeAllTree(); |
322 |
|
} catch (java.lang.Exception ex) |
323 |
|
{ |
324 |
0 |
throw new IllegalStateException(ex.toString()); |
325 |
|
} |
326 |
|
} |
327 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
328 |
12 |
public java.lang.Object newInstance(java.lang.Object parent)... |
329 |
|
{ |
330 |
12 |
return new jalview.schemabinding.version2.Tree(); |
331 |
|
} |
332 |
|
}; |
333 |
166 |
desc.setHandler(handler); |
334 |
166 |
desc.setNameSpaceURI("www.jalview.org"); |
335 |
166 |
desc.setMultivalued(true); |
336 |
166 |
addFieldDescriptor(desc); |
337 |
|
|
338 |
|
|
339 |
166 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
340 |
166 |
fieldValidator.setMinOccurs(0); |
341 |
|
{ |
342 |
|
} |
343 |
166 |
desc.setValidator(fieldValidator); |
344 |
|
|
345 |
166 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
346 |
|
jalview.schemabinding.version2.FeatureSettings.class, |
347 |
|
"_featureSettings", "FeatureSettings", |
348 |
|
org.exolab.castor.xml.NodeType.Element); |
349 |
166 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
350 |
|
{ |
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
351 |
109 |
public java.lang.Object getValue(java.lang.Object object)... |
352 |
|
throws IllegalStateException |
353 |
|
{ |
354 |
109 |
JalviewModelSequence target = (JalviewModelSequence) object; |
355 |
109 |
return target.getFeatureSettings(); |
356 |
|
} |
357 |
|
|
|
|
| 75% |
Uncovered Elements: 1 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
358 |
51 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
359 |
|
throws IllegalStateException, IllegalArgumentException |
360 |
|
{ |
361 |
51 |
try |
362 |
|
{ |
363 |
51 |
JalviewModelSequence target = (JalviewModelSequence) object; |
364 |
51 |
target.setFeatureSettings((jalview.schemabinding.version2.FeatureSettings) value); |
365 |
|
} catch (java.lang.Exception ex) |
366 |
|
{ |
367 |
0 |
throw new IllegalStateException(ex.toString()); |
368 |
|
} |
369 |
|
} |
370 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
371 |
51 |
public java.lang.Object newInstance(java.lang.Object parent)... |
372 |
|
{ |
373 |
51 |
return new jalview.schemabinding.version2.FeatureSettings(); |
374 |
|
} |
375 |
|
}; |
376 |
166 |
desc.setHandler(handler); |
377 |
166 |
desc.setNameSpaceURI("www.jalview.org"); |
378 |
166 |
desc.setMultivalued(false); |
379 |
166 |
addFieldDescriptor(desc); |
380 |
|
|
381 |
|
|
382 |
166 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
383 |
|
{ |
384 |
|
} |
385 |
166 |
desc.setValidator(fieldValidator); |
386 |
|
} |
387 |
|
|
388 |
|
|
389 |
|
|
390 |
|
|
391 |
|
|
392 |
|
|
393 |
|
|
394 |
|
|
395 |
|
@return |
396 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
397 |
0 |
public org.exolab.castor.mapping.AccessMode getAccessMode()... |
398 |
|
{ |
399 |
0 |
return null; |
400 |
|
} |
401 |
|
|
402 |
|
|
403 |
|
|
404 |
|
|
405 |
|
@return |
406 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
407 |
80 |
public org.exolab.castor.mapping.FieldDescriptor getIdentity()... |
408 |
|
{ |
409 |
80 |
return super.getIdentity(); |
410 |
|
} |
411 |
|
|
412 |
|
|
413 |
|
|
414 |
|
|
415 |
|
@return |
416 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
417 |
29 |
public java.lang.Class getJavaClass()... |
418 |
|
{ |
419 |
29 |
return jalview.schemabinding.version2.JalviewModelSequence.class; |
420 |
|
} |
421 |
|
|
422 |
|
|
423 |
|
|
424 |
|
|
425 |
|
@return |
426 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
427 |
29 |
public java.lang.String getNameSpacePrefix()... |
428 |
|
{ |
429 |
29 |
return _nsPrefix; |
430 |
|
} |
431 |
|
|
432 |
|
|
433 |
|
|
434 |
|
|
435 |
|
@return |
436 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
437 |
0 |
public java.lang.String getNameSpaceURI()... |
438 |
|
{ |
439 |
0 |
return _nsURI; |
440 |
|
} |
441 |
|
|
442 |
|
|
443 |
|
|
444 |
|
|
445 |
|
@return |
446 |
|
|
447 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
448 |
29 |
public org.exolab.castor.xml.TypeValidator getValidator()... |
449 |
|
{ |
450 |
29 |
return this; |
451 |
|
} |
452 |
|
|
453 |
|
|
454 |
|
|
455 |
|
|
456 |
|
@return |
457 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
458 |
29 |
public java.lang.String getXMLName()... |
459 |
|
{ |
460 |
29 |
return _xmlName; |
461 |
|
} |
462 |
|
|
463 |
|
|
464 |
|
|
465 |
|
|
466 |
|
@return |
467 |
|
|
468 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
469 |
0 |
public boolean isElementDefinition()... |
470 |
|
{ |
471 |
0 |
return _elementDefinition; |
472 |
|
} |
473 |
|
|
474 |
|
} |