Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
JsSelectionSender	30	38	22	66	0.00%	Show methods

Class JsSelectionSender

Class JsSelectionSender	Line # 30	Total Statements 38	Complexity 22	Uncovered Elements 66	TOTAL Coverage 0.00%
JsSelectionSender(JalviewLite,AlignFrame,String)   JsSelectionSender(JalviewLite,AlignFrame,String)	3838	3.03	1.01	3.03	0.0 0.00%
selection(SequenceGroup,ColumnSelection,HiddenColumns,SelectionSource) : void   selection(SequenceGroup,ColumnSelection,HiddenColumns,SelectionSource) : void	4646	33.033	19.019	57.057	0.0 0.00%
getAlignFrame() : AlignFrame   getAlignFrame() : AlignFrame	130130	1.01	1.01	1.01	0.0 0.00%
getListenerFunction() : String   getListenerFunction() : String	136136	1.01	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.javascript;
22
23		import jalview.appletgui.AlignFrame;
24		import jalview.bin.JalviewLite;
25		import jalview.datamodel.ColumnSelection;
26		import jalview.datamodel.HiddenColumns;
27		import jalview.datamodel.SequenceGroup;
28		import jalview.structure.SelectionSource;
29
		0% Uncovered Elements: 66 (66) Complexity: 22 Complexity Density: 0.58
30		public class JsSelectionSender extends JSFunctionExec
31		implements jalview.structure.SelectionListener, JsCallBack
32		{
33
34		AlignFrame _af;
35
36		String _listener;
37
		0% Uncovered Elements: 3 (3) Complexity: 1 Complexity Density: 0.33
38	0	public JsSelectionSender(JalviewLite jvlite, AlignFrame af,...
39		String listener)
40		{
41	0	super(jvlite);
42	0	_af = af;
43	0	_listener = listener;
44		}
45
		0% Uncovered Elements: 57 (57) Complexity: 19 Complexity Density: 0.58
46	0	@Override...
47		public void selection(SequenceGroup seqsel, ColumnSelection colsel,
48		HiddenColumns hidden, SelectionSource source)
49		{
50		// System.err.println("Testing selection event relay to
51		// jsfunction:"+_listener);
52	0	try
53		{
54	0	String setid = "";
55	0	AlignFrame src = _af;
56	0	if (source != null)
57		{
58	0	if (source instanceof jalview.appletgui.AlignViewport
59		&& ((jalview.appletgui.AlignViewport) source).applet.currentAlignFrame.viewport == source)
60		{
61		// should be valid if it just generated an event!
62	0	src = ((jalview.appletgui.AlignViewport) source).applet.currentAlignFrame;
63
64		}
65		}
66	0	String[] seqs = new String[] {};
67	0	String[] cols = new String[] {};
68	0	int strt = 0, end = (src == null) ? -1
69		: src.alignPanel.av.getAlignment().getWidth();
70	0	if (seqsel != null && seqsel.getSize() > 0)
71		{
72	0	seqs = new String[seqsel.getSize()];
73	0	for (int i = 0; i < seqs.length; i++)
74		{
75	0	seqs[i] = seqsel.getSequenceAt(i).getName();
76		}
77	0	if (strt < seqsel.getStartRes())
78		{
79	0	strt = seqsel.getStartRes();
80		}
81	0	if (end == -1 || end > seqsel.getEndRes())
82		{
83	0	end = seqsel.getEndRes();
84		}
85		}
86	0	if (colsel != null && !colsel.isEmpty())
87		{
88	0	if (end == -1)
89		{
90	0	end = colsel.getMax() + 1;
91		}
92	0	cols = new String[colsel.getSelected().size()];
93	0	for (int i = 0; i < cols.length; i++)
94		{
95	0	cols[i] = "" + (1 + colsel.getSelected().get(i).intValue());
96		}
97		}
98		else
99		{
100	0	if (seqsel != null && seqsel.getSize() > 0)
101		{
102		// send a valid range, otherwise we send the empty selection
103	0	cols = new String[2];
104	0	cols[0] = "" + (1 + strt) + "-" + (1 + end);
105		}
106	0	;
107
108		}
109	0	System.err.println("Relaying selection to jsfunction:" + _listener);
110	0	executeJavascriptFunction(_listener,
111		new Object[]
112		{ src, setid, jvlite.arrayToSeparatorList(seqs),
113		jvlite.arrayToSeparatorList(cols) });
114		} catch (Exception ex)
115		{
116	0	System.err.println(
117		"Jalview Javascript exec error: Couldn't send selection message using function '"
118		+ _listener + "'");
119	0	ex.printStackTrace();
120	0	if (ex instanceof netscape.javascript.JSException)
121		{
122	0	System.err.println("Javascript Exception: "
123		+ ((netscape.javascript.JSException) ex).getCause()
124		.toString());
125		}
126
127		}
128		}
129
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
130	0	@Override...
131		public AlignFrame getAlignFrame()
132		{
133	0	return _af;
134		}
135
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
136	0	@Override...
137		public String getListenerFunction()
138		{
139	0	return _listener;
140		}
141
142		}