Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
SequenceOntologyLiteTest	8	18	1	0	1.0100%	Show methods

Class SequenceOntologyLiteTest

Class SequenceOntologyLiteTest	Line # 8	Total Statements 18	Complexity 1	Uncovered Elements 0	TOTAL Coverage 1.0100%
testIsA_sequenceVariant() : void   testIsA_sequenceVariant() : void	1010	18.018	1.01	0.00	1.0 1.0100%

 

Contributing tests

Contributing tests

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	Test contribution	Test	Result	Actions
	1.0	jalview.io.gff.SequenceOntologyLiteTest.testIsA_sequenceVariantjalview.io.gff.SequenceOntologyLiteTest.testIsA_sequenceVariant	1PASS

 

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1		package jalview.io.gff;
2
3		import static org.testng.AssertJUnit.assertFalse;
4		import static org.testng.AssertJUnit.assertTrue;
5
6		import org.testng.annotations.Test;
7
		100% Uncovered Elements: 0 (19) Complexity: 1 Complexity Density: 0.06
8		public class SequenceOntologyLiteTest
9		{
		100% Uncovered Elements: 0 (18) Complexity: 1 Complexity Density: 0.06 1PASS
10	1	@Test(groups = "Functional")...
11		public void testIsA_sequenceVariant()
12		{
13	1	SequenceOntologyI so = new SequenceOntologyLite();
14
15	1	assertFalse(so.isA("CDS", "sequence_variant"));
16	1	assertTrue(so.isA("sequence_variant", "sequence_variant"));
17
18		/*
19		* these should all be sub-types of sequence_variant
20		*/
21	1	assertTrue(so.isA("structural_variant", "sequence_variant"));
22	1	assertTrue(so.isA("feature_variant", "sequence_variant"));
23	1	assertTrue(so.isA("gene_variant", "sequence_variant"));
24	1	assertTrue(so.isA("transcript_variant", "sequence_variant"));
25	1	assertTrue(so.isA("NMD_transcript_variant", "sequence_variant"));
26	1	assertTrue(so.isA("missense_variant", "sequence_variant"));
27	1	assertTrue(so.isA("synonymous_variant", "sequence_variant"));
28	1	assertTrue(so.isA("frameshift_variant", "sequence_variant"));
29	1	assertTrue(so.isA("5_prime_UTR_variant", "sequence_variant"));
30	1	assertTrue(so.isA("3_prime_UTR_variant", "sequence_variant"));
31	1	assertTrue(so.isA("stop_gained", "sequence_variant"));
32	1	assertTrue(so.isA("stop_lost", "sequence_variant"));
33	1	assertTrue(so.isA("inframe_deletion", "sequence_variant"));
34	1	assertTrue(so.isA("inframe_insertion", "sequence_variant"));
35	1	assertTrue(so.isA("splice_region_variant", "sequence_variant"));
36		}
37		}